Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 117.00052 * 2 1 4 4 C 1.38535 * 120.08560 * 0.29135 * 3 2 1 5 5 C 1.38245 * 120.01762 * 180.28077 * 4 3 2 6 6 C 1.38282 * 120.18722 * 359.72040 * 5 4 3 7 7 C 1.38192 * 120.16497 * 359.97438 * 6 5 4 8 8 C 1.38757 * 119.98071 * 0.02562 * 7 6 5 9 9 N 1.40017 * 120.09207 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99677 * 24.80930 * 9 8 7 11 11 O 1.21745 * 120.00257 * 5.56358 * 10 9 8 12 12 C 1.46225 * 119.99662 * 185.56151 * 10 9 8 13 13 C 1.35044 * 119.99768 * 180.02562 * 12 10 9 14 14 C 1.46959 * 120.00032 * 179.97438 * 13 12 10 15 15 C 1.40041 * 120.07445 * 359.97438 * 14 13 12 16 16 C 1.37647 * 119.99467 * 179.97438 * 15 14 13 17 17 C 1.39061 * 120.16625 * 0.27726 * 16 15 14 18 18 O 1.35610 * 119.92408 * 179.72946 * 17 16 15 19 19 C 1.34765 * 116.99914 * 354.81611 * 18 17 16 20 20 H 1.08003 * 119.99464 * 5.02267 * 19 18 17 21 21 C 1.38702 * 120.00043 * 185.01877 * 19 18 17 22 22 N 1.31521 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46786 * 60.00102 * 23 21 19 25 25 H 1.48497 * 109.46804 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47013 * 300.00313 * 23 21 19 27 27 C 1.39626 * 120.15171 * 359.44371 * 17 16 15 28 28 O 1.35958 * 119.99552 * 180.27622 * 27 17 16 29 29 C 1.42906 * 116.99646 * 180.28325 * 28 27 17 30 30 C 1.38077 * 120.00364 * 0.55891 * 27 17 16 31 31 H 1.09000 * 109.46668 * 60.00286 * 1 2 3 32 32 H 1.08998 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47060 * 300.00850 * 1 2 3 34 34 H 1.08003 * 119.98847 * 0.02562 * 4 3 2 35 35 H 1.08002 * 119.90691 * 179.74509 * 5 4 3 36 36 H 1.07994 * 119.91578 * 179.97438 * 6 5 4 37 37 H 1.07999 * 120.01117 * 179.97438 * 7 6 5 38 38 H 0.96995 * 120.00084 * 204.80949 * 9 8 7 39 39 H 1.07997 * 119.99867 * 359.97438 * 12 10 9 40 40 H 1.07998 * 119.99835 * 359.97438 * 13 12 10 41 41 H 1.07990 * 120.00133 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.91625 * 180.02562 * 16 15 14 43 43 H 0.97005 * 119.99684 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.46708 * 180.02562 * 29 28 27 45 45 H 1.09003 * 109.46679 * 299.99679 * 29 28 27 46 46 H 1.08998 * 109.47202 * 59.99675 * 29 28 27 47 47 H 1.07998 * 120.08125 * 179.70099 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2936 2.3746 0.0061 5 6 1.9227 3.6056 0.0002 6 6 3.3034 3.6809 -0.0059 7 6 4.0618 2.5257 -0.0057 8 6 3.4376 1.2864 0.0002 9 7 4.2038 0.1145 0.0010 10 6 5.4610 0.1317 0.4863 11 8 5.8954 1.1381 1.0160 12 6 6.3033 -1.0586 0.3768 13 6 7.5628 -1.0416 0.8635 14 6 8.4092 -2.2380 0.7539 15 6 7.9109 -3.3967 0.1456 16 6 8.7053 -4.5162 0.0433 17 6 10.0009 -4.5022 0.5481 18 8 10.7774 -5.6097 0.4497 19 6 10.1991 -6.7198 -0.0496 20 1 9.1873 -6.6793 -0.4252 21 6 10.9034 -7.9143 -0.0813 22 7 12.1354 -7.9636 0.3765 23 14 10.1021 -9.4530 -0.7740 24 1 9.7268 -9.2201 -2.1918 25 1 11.0572 -10.5872 -0.6941 26 1 8.8850 -9.7748 0.0137 27 6 10.5063 -3.3485 1.1508 28 8 11.7755 -3.3365 1.6382 29 6 12.2250 -2.1245 2.2474 30 6 9.7153 -2.2218 1.2570 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 0.2150 2.3195 0.0113 35 1 1.3340 4.5111 0.0008 36 1 3.7903 4.6449 -0.0109 37 1 5.1400 2.5873 -0.0109 38 1 3.8297 -0.7097 -0.3477 39 1 5.9177 -1.9516 -0.0926 40 1 7.9481 -0.1487 1.3333 41 1 6.9039 -3.4117 -0.2441 42 1 8.3199 -5.4090 -0.4265 43 1 12.6278 -8.7991 0.3547 44 1 13.2513 -2.2501 2.5922 45 1 12.1833 -1.3146 1.5191 46 1 11.5833 -1.8843 3.0951 47 1 10.1033 -1.3303 1.7272 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003481739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -54.615101 kcal Electronic energy + Delta-G solvation = -31077.320720 eV Core-core repulsion = 26578.839003 eV Total energy + Delta-G solvation = -4498.481717 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.91816 -39.76774 -39.37901 -37.70229 -37.47360 -36.58709 -34.81559 -33.12379 -32.30732 -30.45934 -30.09147 -29.72156 -28.57090 -27.53274 -26.57805 -25.60484 -24.13042 -22.68947 -22.28620 -21.77126 -20.77453 -19.40179 -18.53940 -18.23399 -17.82163 -17.41303 -16.97141 -16.21805 -16.07956 -15.87421 -15.39848 -15.22819 -15.08540 -14.89630 -14.75686 -14.46000 -14.27092 -14.01406 -13.75098 -13.62697 -13.54456 -13.47774 -13.02192 -12.50745 -12.39446 -12.19512 -11.86453 -11.84615 -11.74780 -11.56175 -11.48347 -11.41877 -11.11778 -11.06717 -10.82342 -10.73444 -10.63353 -10.53596 -9.76872 -9.61710 -9.44981 -8.88556 -8.78760 -8.03935 -7.92838 -6.94406 -6.64763 -4.15669 0.81296 1.17746 1.24094 2.09057 2.48278 2.86340 3.03394 3.05025 3.07962 3.10393 3.37757 3.70404 3.80824 3.92247 4.43738 4.53153 4.64357 4.77161 4.79641 4.83557 4.87729 4.98119 5.04414 5.13757 5.16973 5.21233 5.34361 5.42393 5.52786 5.53060 5.55029 5.64826 5.68616 5.81534 5.87939 5.96117 6.04191 6.17862 6.28557 6.35524 6.39479 6.44215 6.53754 6.61953 6.80577 6.97136 7.05476 7.10653 7.22314 7.40810 7.44696 7.75633 8.05162 8.17434 8.78037 9.46427 10.50756 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.001734 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.909255 B =16139.873621 C =18219.167146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.090 3.910 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.134 4.134 7 C -0.099 4.099 8 C 0.132 3.868 9 N -0.664 5.664 10 C 0.556 3.444 11 O -0.541 6.541 12 C -0.283 4.283 13 C 0.044 3.956 14 C -0.170 4.170 15 C -0.057 4.057 16 C -0.226 4.226 17 C 0.149 3.851 18 O -0.145 6.145 19 C -0.391 4.391 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.843 5.843 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 C 0.051 3.949 28 O -0.303 6.303 29 C 0.030 3.970 30 C -0.135 4.135 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.154 0.846 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.275 0.725 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 16.482 -1.306 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.043 3.957 4 C -0.208 4.208 5 C -0.126 4.126 6 C -0.153 4.153 7 C -0.119 4.119 8 C 0.037 3.963 9 N -0.307 5.307 10 C 0.351 3.649 11 O -0.421 6.421 12 C -0.304 4.304 13 C 0.025 3.975 14 C -0.172 4.172 15 C -0.075 4.075 16 C -0.246 4.246 17 C 0.092 3.908 18 O -0.046 6.046 19 C -0.466 4.466 20 H 0.115 0.885 21 C -0.166 4.166 22 N -0.475 5.475 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C 0.006 3.994 28 O -0.217 6.217 29 C -0.066 4.066 30 C -0.154 4.154 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.690 16.495 -0.862 24.203 hybrid contribution -1.072 -0.783 -0.435 1.397 sum -18.762 15.712 -1.298 24.507 Atomic orbital electron populations 1.23035 0.78160 1.03988 1.01267 1.86013 1.21541 1.26520 1.89295 1.18706 0.90411 0.85020 1.01549 1.21006 0.99719 0.91867 1.08223 1.20898 0.94715 0.96839 1.00142 1.21008 0.93609 0.98269 1.02372 1.21386 1.02103 0.89655 0.98780 1.17183 0.86795 0.87625 1.04731 1.43303 1.14266 1.11126 1.62022 1.18527 0.80773 0.88935 0.76701 1.90733 1.73237 1.34540 1.43636 1.22344 0.96448 0.98176 1.13404 1.22252 0.91633 0.95603 0.88043 1.18143 0.94467 0.94355 1.10195 1.20946 0.98393 0.91762 0.96397 1.20831 0.94160 1.00375 1.09193 1.18894 0.90144 0.87178 0.94561 1.83987 1.35727 1.15863 1.68992 1.21489 1.00165 0.84907 1.40046 0.88499 1.25425 0.95739 0.98682 0.96708 1.70040 1.09234 1.27950 1.40256 0.85707 0.78803 0.79119 0.79460 1.19200 1.20061 1.19201 1.18040 0.85571 0.93340 1.02410 1.86239 1.26689 1.35711 1.73092 1.22922 1.00186 0.86734 0.96747 1.20878 0.94233 0.96642 1.03647 0.92689 0.88166 0.92689 0.85311 0.85882 0.85599 0.82854 0.74911 0.85482 0.85837 0.86542 0.84479 0.91477 0.88953 0.93434 0.93412 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.13 9.91 -19.69 -0.20 -3.32 16 3 C 0.09 0.98 6.70 -39.07 -0.26 0.72 16 4 C -0.19 -1.70 9.04 -39.47 -0.36 -2.05 16 5 C -0.11 -0.93 10.04 -39.56 -0.40 -1.33 16 6 C -0.13 -1.33 10.04 -39.58 -0.40 -1.73 16 7 C -0.10 -1.23 8.71 -39.41 -0.34 -1.57 16 8 C 0.13 1.65 6.45 -83.52 -0.54 1.11 16 9 N -0.66 -8.12 5.28 -11.05 -0.06 -8.18 16 10 C 0.56 7.92 7.54 -13.05 -0.10 7.82 16 11 O -0.54 -9.03 13.40 5.15 0.07 -8.96 16 12 C -0.28 -3.84 9.41 -37.51 -0.35 -4.19 16 13 C 0.04 0.66 9.45 -37.19 -0.35 0.31 16 14 C -0.17 -2.89 5.87 -105.04 -0.62 -3.50 16 15 C -0.06 -0.98 9.40 -39.12 -0.37 -1.35 16 16 C -0.23 -4.61 9.14 -39.49 -0.36 -4.97 16 17 C 0.15 3.52 6.67 -38.76 -0.26 3.26 16 18 O -0.15 -4.04 9.52 -13.95 -0.13 -4.17 16 19 C -0.39 -10.38 9.48 30.90 0.29 -10.08 16 20 H 0.10 2.32 5.18 -52.48 -0.27 2.05 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.84 -23.75 13.67 55.48 0.76 -22.99 16 23 Si 0.95 19.35 29.55 -169.99 -5.02 14.32 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 27 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 28 O -0.30 -6.40 10.28 -34.22 -0.35 -6.76 16 29 C 0.03 0.43 9.81 101.05 0.99 1.43 16 30 C -0.13 -2.39 8.77 -38.99 -0.34 -2.73 16 31 H 0.05 0.25 7.68 -51.93 -0.40 -0.15 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.27 7.65 -51.93 -0.40 -0.12 16 34 H 0.13 0.82 6.30 -52.48 -0.33 0.49 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.15 2.10 5.79 -52.49 -0.30 1.80 16 38 H 0.41 4.19 8.32 -40.82 -0.34 3.85 16 39 H 0.13 1.50 6.06 -52.49 -0.32 1.18 16 40 H 0.12 1.78 7.52 -52.49 -0.39 1.39 16 41 H 0.12 1.65 6.15 -52.49 -0.32 1.33 16 42 H 0.14 2.71 5.61 -52.49 -0.29 2.42 16 43 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 46 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 47 H 0.12 1.84 6.28 -52.49 -0.33 1.51 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -32.92 400.02 -7.35 -40.28 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.32 Total: 9.62 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.13 Total: -15.87 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.70 Total: -31.17 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.61 Total: -23.21 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.92 -7.35 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003481739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.339 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds