Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.93071 * 2 1 4 4 C 1.38105 * 120.06963 * 180.02562 * 3 2 1 5 5 C 1.38877 * 119.93120 * 359.97137 * 4 3 2 6 6 N 1.39926 * 120.07053 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99907 * 292.12712 * 6 5 4 8 8 C 1.50692 * 109.47245 * 270.00152 * 7 6 5 9 9 H 1.08002 * 120.00171 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00237 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99644 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00392 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47030 * 60.00018 * 12 10 8 14 14 H 1.48503 * 109.47526 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47320 * 300.00313 * 12 10 8 16 16 C 1.34774 * 119.99991 * 112.13107 * 6 5 4 17 17 O 1.21289 * 119.99632 * 355.26714 * 16 6 5 18 18 C 1.50693 * 120.00112 * 175.26385 * 16 6 5 19 19 O 1.42901 * 109.47153 * 179.97438 * 18 16 6 20 20 C 1.35907 * 116.99872 * 180.02562 * 19 18 16 21 21 C 1.38723 * 120.05477 * 359.72559 * 20 19 18 22 22 C 1.38154 * 119.94166 * 179.76758 * 21 20 19 23 23 C 1.38269 * 120.05371 * 0.51055 * 22 21 20 24 24 N 1.47999 * 119.94212 * 179.72132 * 23 22 21 25 25 O 1.21804 * 119.99953 * 180.02562 * 24 23 22 26 26 O 1.21801 * 120.00382 * 0.02562 * 24 23 22 27 27 C 1.38265 * 120.11054 * 359.74026 * 23 22 21 28 28 C 1.38145 * 120.05729 * 0.02562 * 27 23 22 29 29 C 1.38876 * 119.85636 * 0.26339 * 5 4 3 30 30 C 1.38115 * 119.93027 * 359.50394 * 29 5 4 31 31 H 1.08997 * 109.46996 * 89.99994 * 1 2 3 32 32 H 1.08992 * 109.47531 * 210.00233 * 1 2 3 33 33 H 1.09002 * 109.46907 * 330.00354 * 1 2 3 34 34 H 1.08004 * 119.96043 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.03423 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47323 * 30.00420 * 7 6 5 37 37 H 1.09005 * 109.46846 * 150.00197 * 7 6 5 38 38 H 0.96995 * 119.99885 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.46931 * 60.00162 * 18 16 6 40 40 H 1.09000 * 109.47663 * 300.00284 * 18 16 6 41 41 H 1.08000 * 120.03332 * 0.02562 * 21 20 19 42 42 H 1.08000 * 119.97331 * 180.22931 * 22 21 20 43 43 H 1.07999 * 119.96992 * 180.02562 * 27 23 22 44 44 H 1.07999 * 120.02489 * 179.97438 * 28 27 23 45 45 H 1.08004 * 120.03145 * 179.74916 * 29 5 4 46 46 H 1.07994 * 119.96375 * 180.23762 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 -0.0016 7 6 6.4047 0.4772 -1.1777 8 6 6.6551 -0.6755 -2.1154 9 1 6.3040 -1.6647 -1.8611 10 6 7.3324 -0.4674 -3.2982 11 7 7.7604 0.7371 -3.6078 12 14 7.6435 -1.8963 -4.4604 13 1 6.3457 -2.4783 -4.8877 14 1 8.3860 -1.4128 -5.6520 15 1 8.4464 -2.9343 -3.7650 16 6 6.3478 -0.4392 1.0793 17 8 5.7452 -0.7535 2.0839 18 6 7.8509 -0.5399 1.0397 19 8 8.3290 -1.0262 2.2955 20 6 9.6733 -1.1757 2.4279 21 6 10.5144 -0.8664 1.3690 22 6 11.8809 -1.0148 1.5077 23 6 12.4096 -1.4811 2.6972 24 7 13.8734 -1.6450 2.8410 25 8 14.3403 -2.0562 3.8881 26 8 14.6114 -1.3686 1.9122 27 6 11.5730 -1.7950 3.7523 28 6 10.2062 -1.6438 3.6202 29 6 3.5780 -1.2019 -0.0054 30 6 2.1968 -1.1984 0.0000 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6552 2.1328 -0.0004 35 1 4.1163 2.1381 -0.0010 36 1 5.8153 1.2391 -1.6877 37 1 7.3574 0.9043 -0.8643 38 1 8.2366 0.8836 -4.4400 39 1 8.2760 0.4450 0.8462 40 1 8.1484 -1.2262 0.2469 41 1 10.1016 -0.5060 0.4383 42 1 12.5364 -0.7706 0.6849 43 1 11.9884 -2.1587 4.6804 44 1 9.5532 -1.8896 4.4445 45 1 4.1163 -2.1382 -0.0095 46 1 1.6551 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003523608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -20.485230 kcal Electronic energy + Delta-G solvation = -32264.892662 eV Core-core repulsion = 27702.465016 eV Total energy + Delta-G solvation = -4562.427645 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18984 -40.72934 -39.94989 -38.48123 -37.50214 -36.57538 -35.45528 -33.07492 -31.95085 -31.62696 -31.28037 -30.69608 -28.77320 -27.70798 -26.24386 -25.62873 -23.59977 -23.30052 -22.36935 -22.29120 -21.38619 -19.50183 -19.26491 -18.67198 -18.48036 -17.54380 -17.07272 -16.80931 -16.59595 -16.19857 -15.80381 -15.22838 -15.15632 -15.05032 -14.61018 -14.34145 -14.07913 -13.98517 -13.73000 -13.59483 -13.30362 -13.18814 -12.99092 -12.71152 -12.53228 -12.20530 -11.92294 -11.69481 -11.63082 -11.48315 -11.38086 -11.36176 -11.22941 -11.18464 -11.17347 -10.96892 -10.86344 -10.41324 -10.08677 -9.68993 -9.53364 -8.94144 -8.80476 -8.68561 -8.64868 -7.83566 -6.42965 -4.52852 -0.18120 0.72134 1.29964 1.39207 1.54124 1.69603 2.48157 2.86118 3.08838 3.09520 3.16054 3.18367 3.68700 4.00270 4.13760 4.17985 4.28525 4.45225 4.69940 4.83948 4.90617 5.01262 5.03506 5.04887 5.09576 5.25005 5.26788 5.35901 5.45184 5.46280 5.58572 5.62804 5.66516 5.74782 5.77203 5.92941 5.95107 5.99016 6.28355 6.33904 6.42490 6.59619 6.71478 6.80403 6.87573 6.90422 7.05526 7.40109 7.51134 7.62476 7.73036 7.83294 8.45113 8.60070 9.16761 10.63525 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.002497 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.309260 B =11210.367996 C =13517.884809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.117 4.117 5 C 0.167 3.833 6 N -0.554 5.554 7 C 0.235 3.765 8 C -0.550 4.550 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.886 5.886 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.525 3.475 17 O -0.535 6.535 18 C 0.039 3.961 19 O -0.279 6.279 20 C 0.195 3.805 21 C -0.209 4.209 22 C -0.008 4.008 23 C -0.094 4.094 24 N 0.039 4.961 25 O -0.173 6.173 26 O -0.170 6.170 27 C -0.016 4.016 28 C -0.153 4.153 29 C -0.101 4.101 30 C -0.112 4.112 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.269 0.731 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -0.707 8.552 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.077 3.923 6 N -0.283 5.283 7 C 0.117 3.883 8 C -0.588 4.588 9 H 0.081 0.919 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.312 3.688 17 O -0.412 6.412 18 C -0.038 4.038 19 O -0.189 6.189 20 C 0.146 3.854 21 C -0.229 4.229 22 C -0.027 4.027 23 C -0.178 4.178 24 N 0.555 4.445 25 O -0.387 6.387 26 O -0.384 6.384 27 C -0.035 4.035 28 C -0.172 4.172 29 C -0.120 4.120 30 C -0.131 4.131 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.174 0.826 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.669 -0.703 8.990 9.735 hybrid contribution 0.811 -0.641 -1.255 1.626 sum -2.858 -1.344 7.735 8.355 Atomic orbital electron populations 1.20729 0.91496 1.02337 1.02001 1.19837 0.95805 0.93218 1.01251 1.20782 0.93415 0.97390 1.01534 1.21167 0.94235 0.97360 1.00923 1.17464 0.82729 0.93040 0.99079 1.45752 1.03673 1.62266 1.16584 1.19668 0.91715 0.95975 0.80946 1.21377 1.37938 0.95096 1.04369 0.91857 1.24915 0.94896 0.96058 0.97494 1.69890 1.37142 1.20640 1.24676 0.86561 0.78748 0.82086 0.80232 1.19899 1.20878 1.19943 1.19719 0.88209 0.77738 0.83086 1.90708 1.69919 1.49030 1.31530 1.22827 0.93997 1.02426 0.84534 1.86165 1.17728 1.78657 1.36390 1.19474 0.83273 0.89185 0.93503 1.21530 0.92655 1.07767 1.00900 1.20853 0.95511 0.90975 0.95329 1.20960 0.79603 1.17712 0.99554 1.43527 1.03550 0.97463 0.99950 1.94512 1.79284 1.47689 1.17205 1.94537 1.57408 1.53740 1.32760 1.20776 0.91853 0.93128 0.97761 1.20434 0.93800 1.05387 0.97596 1.21206 0.94110 0.97584 0.99147 1.20818 0.93510 0.97415 1.01342 0.91450 0.91859 0.91854 0.86106 0.85927 0.93664 0.94229 0.92082 0.88092 0.86523 0.82168 0.82570 0.82459 0.82639 0.86186 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.10 -1.38 5.88 -104.59 -0.62 -2.00 16 3 C -0.11 -1.60 9.69 -39.61 -0.38 -1.99 16 4 C -0.12 -1.95 9.69 -39.39 -0.38 -2.33 16 5 C 0.17 3.14 4.74 -83.69 -0.40 2.74 16 6 N -0.55 -10.70 2.51 -114.74 -0.29 -10.99 16 7 C 0.24 4.94 4.88 -5.20 -0.03 4.91 16 8 C -0.55 -12.78 9.16 -34.44 -0.32 -13.10 16 9 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -22.20 13.29 55.43 0.74 -21.47 16 12 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 C 0.53 9.91 7.60 -10.99 -0.08 9.83 16 17 O -0.53 -11.40 16.26 -14.36 -0.23 -11.64 16 18 C 0.04 0.61 3.88 36.00 0.14 0.75 16 19 O -0.28 -4.18 9.67 -39.36 -0.38 -4.56 16 20 C 0.19 2.42 6.69 -39.22 -0.26 2.16 16 21 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 22 C -0.01 -0.09 9.55 -39.60 -0.38 -0.46 16 23 C -0.09 -1.14 6.85 -79.94 -0.55 -1.69 16 24 N 0.04 0.54 4.45 33.97 0.15 0.69 16 25 O -0.17 -2.47 18.44 -29.46 -0.54 -3.01 16 26 O -0.17 -2.52 18.44 -29.46 -0.54 -3.07 16 27 C -0.02 -0.17 9.55 -39.61 -0.38 -0.54 16 28 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 29 C -0.10 -1.79 9.56 -39.39 -0.38 -2.16 16 30 C -0.11 -1.67 9.69 -39.61 -0.38 -2.05 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 37 H 0.04 0.81 6.47 -51.93 -0.34 0.47 16 38 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 39 H 0.10 1.39 6.79 -51.93 -0.35 1.03 16 40 H 0.12 1.79 7.42 -51.93 -0.39 1.41 16 41 H 0.16 1.79 6.30 -52.49 -0.33 1.46 16 42 H 0.16 1.61 7.61 -52.49 -0.40 1.21 16 43 H 0.16 1.30 7.60 -52.49 -0.40 0.90 16 44 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -28.82 406.62 -10.40 -39.22 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.53 Total: 4.55 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -4.88 Total: -9.86 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.60 Total: -31.76 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.70 Total: -22.27 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.82 -10.40 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003523608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.734 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds