Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30540 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48493 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47053 * 299.99912 * 3 2 1 6 6 H 1.48500 * 109.47230 * 59.99852 * 3 2 1 7 7 C 1.40328 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.41776 * 120.00393 * 359.97438 * 7 2 1 10 10 O 1.21830 * 119.99362 * 0.02562 * 9 7 2 11 11 C 1.47510 * 120.00347 * 179.97438 * 9 7 2 12 12 C 1.39838 * 120.20688 * 0.02562 * 11 9 7 13 13 C 1.37693 * 119.90444 * 180.02562 * 12 11 9 14 14 C 1.38723 * 120.33042 * 359.97438 * 13 12 11 15 15 C 1.38047 * 120.42431 * 0.02562 * 14 13 12 16 16 C 1.38725 * 120.09062 * 359.97438 * 15 14 13 17 17 O 1.35588 * 120.16482 * 179.97438 * 16 15 14 18 18 C 1.35869 * 118.00244 * 0.58395 * 17 16 15 19 19 C 1.38803 * 120.04792 * 89.98842 * 18 17 16 20 20 C 1.38096 * 119.95461 * 179.97438 * 19 18 17 21 21 C 1.38405 * 120.04507 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 119.94921 * 179.97438 * 21 20 19 23 23 C 1.38359 * 120.09988 * 0.02562 * 21 20 19 24 24 C 1.50699 * 119.98192 * 179.97438 * 23 21 20 25 25 F 1.39895 * 109.47485 * 180.02562 * 24 23 21 26 26 F 1.39901 * 109.47154 * 300.00318 * 24 23 21 27 27 F 1.39906 * 109.46650 * 59.99931 * 24 23 21 28 28 C 1.38145 * 120.04476 * 359.70248 * 23 21 20 29 29 H 0.96996 * 120.00057 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05023 * 359.97438 * 12 11 9 31 31 H 1.07998 * 119.83698 * 180.02562 * 13 12 11 32 32 H 1.07999 * 119.78419 * 179.72470 * 14 13 12 33 33 H 1.08007 * 119.95142 * 179.97438 * 15 14 13 34 34 H 1.08004 * 120.02455 * 359.97438 * 19 18 17 35 35 H 1.08000 * 119.97679 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.02718 * 180.28045 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3965 1.2125 7 6 2.0071 -1.2153 0.0005 8 1 3.0870 -1.2153 0.0010 9 6 1.2983 -2.4431 0.0016 10 8 0.0800 -2.4431 0.0016 11 6 2.0359 -3.7206 0.0016 12 6 3.4342 -3.7256 0.0011 13 6 4.1164 -4.9217 0.0006 14 6 3.4234 -6.1234 0.0011 15 6 2.0430 -6.1343 0.0016 16 6 1.3380 -4.9396 0.0022 17 8 -0.0179 -4.9486 0.0022 18 6 -0.6478 -6.1523 0.0139 19 6 -0.9699 -6.7565 1.2213 20 6 -1.6107 -7.9798 1.2309 21 6 -1.9322 -8.6031 0.0377 22 17 -2.7371 -10.1412 0.0527 23 6 -1.6121 -8.0027 -1.1670 24 6 -1.9628 -8.6840 -2.4647 25 9 -1.5415 -7.8904 -3.5369 26 9 -1.3243 -9.9272 -2.5261 27 9 -3.3480 -8.8672 -2.5355 28 6 -0.9761 -6.7764 -1.1813 29 1 -0.4850 0.8400 0.0004 30 1 3.9784 -2.7927 0.0003 31 1 5.1964 -4.9243 0.0006 32 1 3.9674 -7.0564 -0.0038 33 1 1.5112 -7.0744 0.0016 34 1 -0.7196 -6.2703 2.1526 35 1 -1.8611 -8.4504 2.1702 36 1 -0.7304 -6.3059 -2.1218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004105366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -165.101093 kcal Electronic energy + Delta-G solvation = -30374.982545 eV Core-core repulsion = 25401.177370 eV Total energy + Delta-G solvation = -4973.805176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 370.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.30914 -47.82661 -47.75457 -40.84862 -39.01093 -37.44792 -36.57135 -36.12342 -32.70726 -32.39394 -30.85301 -30.55332 -29.14897 -26.78945 -26.34947 -23.62906 -23.02686 -22.72284 -21.37186 -19.90102 -19.01163 -18.64604 -18.62984 -17.50382 -16.86782 -16.66828 -16.36159 -15.91965 -15.48581 -14.79059 -14.74621 -14.63507 -14.33401 -14.20384 -14.03006 -13.92457 -13.90380 -13.79265 -13.72029 -13.42943 -13.29849 -13.03950 -12.69775 -12.36623 -12.26719 -11.69130 -11.67735 -11.48408 -11.35411 -11.32632 -11.04720 -10.90352 -10.75827 -10.37278 -10.18065 -9.68873 -9.02218 -8.91080 -8.36897 -7.72641 -7.46007 -6.31897 -4.92347 0.39286 0.68679 1.58282 1.64921 1.84007 2.40887 2.82947 3.01647 3.11170 3.15006 3.39731 3.57663 3.84897 3.94013 3.98002 4.20701 4.39445 4.55445 4.72096 4.81980 4.94918 5.16681 5.23135 5.34728 5.39804 5.53782 5.64295 5.76056 5.76262 5.95572 5.99705 6.02632 6.30321 6.52372 6.71629 6.80384 7.01861 7.21802 7.33064 7.95340 7.99509 8.76807 8.79611 10.29439 10.51552 Molecular weight = 370.04amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.002638 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.223138 B =10612.686156 C =11123.491416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.074 0.926 9 C 0.386 3.614 10 O -0.520 6.520 11 C -0.122 4.122 12 C -0.060 4.060 13 C -0.164 4.164 14 C -0.094 4.094 15 C -0.213 4.213 16 C 0.136 3.864 17 O -0.212 6.212 18 C 0.108 3.892 19 C -0.085 4.085 20 C -0.096 4.096 21 C -0.003 4.003 22 Cl -0.047 7.047 23 C -0.167 4.167 24 C 0.512 3.488 25 F -0.171 7.171 26 F -0.171 7.171 27 F -0.170 7.170 28 C -0.073 4.073 29 H 0.273 0.727 30 H 0.139 0.861 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 -16.883 0.386 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.092 0.908 9 C 0.281 3.719 10 O -0.408 6.408 11 C -0.124 4.124 12 C -0.078 4.078 13 C -0.182 4.182 14 C -0.112 4.112 15 C -0.231 4.231 16 C 0.093 3.907 17 O -0.123 6.123 18 C 0.064 3.936 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.030 4.030 22 Cl -0.018 7.018 23 C -0.169 4.169 24 C 0.458 3.542 25 F -0.153 7.153 26 F -0.152 7.152 27 F -0.151 7.151 28 C -0.092 4.092 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.109 -16.824 0.343 16.864 hybrid contribution 0.476 0.339 -0.235 0.630 sum -0.633 -16.484 0.108 16.497 Atomic orbital electron populations 1.69970 1.07485 1.27977 1.30857 1.25973 0.94631 1.00928 0.92809 0.86339 0.80804 0.81400 0.78540 1.18378 1.19856 1.19871 1.20921 0.94850 0.91524 1.47604 0.90814 1.17998 0.88665 0.85295 0.79985 1.90568 1.14508 1.88009 1.47724 1.21617 0.93897 0.95365 1.01516 1.21446 0.92781 0.98248 0.95345 1.21044 0.99569 0.92558 1.05041 1.20831 0.93089 0.97853 0.99423 1.21097 0.95571 0.96082 1.10389 1.19494 0.80257 0.93926 0.97053 1.84736 1.16908 1.23064 1.87552 1.18775 0.96370 0.86438 0.92005 1.21750 0.96116 0.93466 0.99040 1.20939 0.98773 0.94889 0.96895 1.20606 0.99192 0.89390 0.93792 1.98411 1.77446 1.27093 1.98861 1.19637 1.07927 0.97901 0.91437 1.18014 0.75058 0.76910 0.84243 1.93203 1.89889 1.73779 1.58389 1.93234 1.81763 1.43467 1.96714 1.93243 1.29886 1.95282 1.96671 1.21334 0.95647 0.91766 1.00412 0.91553 0.84354 0.86375 0.86526 0.86502 0.82970 0.83054 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.73 11.73 55.57 0.65 -20.08 16 2 C 0.08 2.09 5.50 -17.31 -0.10 2.00 16 3 Si 0.91 18.77 29.56 -169.99 -5.03 13.75 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.52 -13.76 8.86 -37.45 -0.33 -14.09 16 8 H 0.07 1.76 6.02 -52.49 -0.32 1.44 16 9 C 0.39 10.64 6.91 -34.45 -0.24 10.40 16 10 O -0.52 -16.13 13.72 -16.75 -0.23 -16.36 16 11 C -0.12 -2.76 5.90 -104.68 -0.62 -3.38 16 12 C -0.06 -1.13 9.43 -39.18 -0.37 -1.50 16 13 C -0.16 -2.53 10.03 -39.60 -0.40 -2.93 16 14 C -0.09 -1.39 10.03 -39.47 -0.40 -1.78 16 15 C -0.21 -3.50 9.19 -39.47 -0.36 -3.86 16 16 C 0.14 2.76 6.69 -38.56 -0.26 2.51 16 17 O -0.21 -4.45 8.06 -24.38 -0.20 -4.65 16 18 C 0.11 1.73 3.95 -39.18 -0.15 1.58 16 19 C -0.09 -1.10 9.92 -39.42 -0.39 -1.49 16 20 C -0.10 -1.02 9.82 -39.57 -0.39 -1.41 16 21 C 0.00 -0.03 6.25 -39.48 -0.25 -0.28 16 22 Cl -0.05 -0.50 26.58 -51.86 -1.38 -1.88 16 23 C -0.17 -2.16 5.37 -104.61 -0.56 -2.72 16 24 C 0.51 6.48 2.86 36.00 0.10 6.58 16 25 F -0.17 -2.25 15.97 2.25 0.04 -2.21 16 26 F -0.17 -2.10 16.38 2.25 0.04 -2.06 16 27 F -0.17 -2.16 16.39 2.25 0.04 -2.12 16 28 C -0.07 -1.06 9.27 -39.42 -0.37 -1.43 16 29 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 30 H 0.14 2.48 6.20 -52.48 -0.33 2.15 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.69 6.69 -52.48 -0.35 1.34 16 34 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.16 2.28 7.15 -52.49 -0.38 1.90 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -31.73 346.29 -8.11 -39.84 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.19 Total: 2.37 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -5.07 Total: -11.80 kcal Atomic # 7 Polarization: -20.73 SS G_CDS: 0.65 Total: -20.08 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.43 Total: -21.01 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.38 Total: -1.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.73 -8.11 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004105366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.261 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds