Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31223 * 118.50674 * 2 1 4 4 C 1.34147 * 120.47579 * 179.71010 * 3 2 1 5 5 C 1.40139 * 121.97637 * 179.65762 * 4 3 2 6 6 C 1.36330 * 119.58146 * 180.27999 * 5 4 3 7 7 C 1.39202 * 121.02630 * 0.29645 * 6 5 4 8 8 C 1.36415 * 120.88956 * 0.02562 * 7 6 5 9 9 C 1.39890 * 119.50368 * 359.97401 * 8 7 6 10 10 C 1.41681 * 122.12561 * 179.97438 * 9 8 7 11 11 S 1.76196 * 120.91783 * 0.04391 * 10 9 8 12 12 C 1.81003 * 99.99897 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47121 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99832 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00103 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00091 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47080 * 90.00414 * 16 15 13 18 18 H 1.08001 * 119.99649 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00490 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99608 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00403 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47287 * 60.00016 * 21 19 17 23 23 H 1.48503 * 109.47214 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99699 * 21 19 17 25 25 C 1.46505 * 119.99901 * 0.02562 * 15 13 12 26 26 C 1.53005 * 109.47072 * 90.00031 * 25 15 13 27 27 C 1.47192 * 109.46976 * 179.97438 * 26 25 15 28 28 N 6.64133 * 57.69108 * 194.90211 * 2 1 3 29 29 N 1.32297 * 118.51295 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47583 * 270.02509 * 1 2 3 31 31 H 1.08995 * 109.47440 * 30.02896 * 1 2 3 32 32 H 1.09004 * 109.46729 * 150.02629 * 1 2 3 33 33 H 1.08002 * 120.21257 * 0.55930 * 5 4 3 34 34 H 1.07996 * 119.49276 * 180.27935 * 6 5 4 35 35 H 1.07991 * 119.55868 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.24671 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.46900 * 299.99884 * 12 11 10 38 38 H 1.08996 * 109.47554 * 59.99721 * 12 11 10 39 39 H 1.09001 * 109.47438 * 209.99672 * 16 15 13 40 40 H 1.09000 * 109.47196 * 330.00248 * 16 15 13 41 41 H 0.96996 * 119.99789 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47064 * 209.99907 * 25 15 13 43 43 H 1.09001 * 109.46889 * 329.99866 * 25 15 13 44 44 H 1.08999 * 109.46634 * 299.99707 * 26 25 15 45 45 H 1.08994 * 109.46883 * 59.99776 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1332 1.1531 0.0000 4 6 3.4739 1.1992 0.0058 5 6 4.1748 2.4127 -0.0011 6 6 5.5380 2.4026 -0.0004 7 6 6.2466 1.2044 0.0008 8 6 5.5954 0.0057 0.0009 9 6 4.1968 -0.0185 0.0003 10 6 3.4642 -1.2313 -0.0002 11 16 4.2900 -2.7877 0.0012 12 6 2.8627 -3.9008 0.0007 13 6 3.3403 -5.3302 0.0011 14 8 4.5286 -5.5724 0.0012 15 7 2.4469 -6.3392 0.0014 16 6 2.9111 -7.7287 0.0012 17 6 3.0707 -8.2052 1.4220 18 1 2.8489 -7.5394 2.2429 19 6 3.5009 -9.4906 1.6738 20 7 3.7715 -10.3012 0.6741 21 14 3.6993 -10.0810 3.4349 22 1 2.3929 -9.9962 4.1356 23 1 4.1699 -11.4895 3.4347 24 1 4.6926 -9.2269 4.1343 25 6 1.0113 -6.0465 0.0007 26 6 0.5121 -5.9455 -1.4421 27 6 -0.9303 -5.6521 -1.4427 28 7 -2.0427 -5.4243 -1.4435 29 7 2.1385 -1.1625 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5135 33 1 3.6384 3.3501 -0.0023 34 1 6.0767 3.3386 -0.0012 35 1 7.3263 1.2240 0.0009 36 1 6.1556 -0.9177 0.0015 37 1 2.2596 -3.7186 0.8902 38 1 2.2608 -3.7195 -0.8897 39 1 2.1820 -8.3554 -0.5124 40 1 3.8702 -7.7912 -0.5129 41 1 4.0737 -11.2057 0.8512 42 1 0.4774 -6.8457 0.5148 43 1 0.8330 -5.1016 0.5140 44 1 1.0461 -5.1463 -1.9561 45 1 0.6905 -6.8904 -1.9552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004221421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 58.443798 kcal Electronic energy + Delta-G solvation = -29545.073888 eV Core-core repulsion = 25461.114485 eV Total energy + Delta-G solvation = -4083.959404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44298 -39.40787 -38.08114 -36.92780 -35.39785 -34.39433 -33.01012 -32.47315 -31.27559 -30.95126 -30.13076 -28.42488 -26.96725 -25.29629 -24.13185 -23.43937 -22.84797 -22.63977 -19.05977 -18.59042 -18.37667 -17.78361 -17.39258 -16.81629 -16.51798 -15.93001 -15.69636 -15.38965 -15.12996 -15.07192 -14.78526 -14.57577 -14.16843 -14.03247 -13.81484 -13.44172 -13.36349 -13.08996 -12.81269 -12.78283 -12.59534 -12.50062 -12.40901 -12.27479 -12.03854 -12.01175 -11.79120 -11.46134 -11.36150 -11.20615 -11.06110 -10.93680 -10.73261 -10.59914 -10.26382 -9.81694 -9.54437 -9.44722 -9.31402 -8.98166 -8.52715 -8.03232 -7.81637 -6.14960 -4.20126 -0.13444 0.45600 1.07456 1.52129 1.85972 2.63755 2.68737 2.79191 3.03474 3.27121 3.32068 3.34845 3.53051 3.73417 3.74029 3.94427 4.09183 4.25265 4.36482 4.39021 4.58822 4.76007 4.86089 4.94783 4.94941 4.96145 5.05503 5.10733 5.20783 5.31665 5.32525 5.37792 5.42692 5.43960 5.61330 5.71698 5.74916 5.83056 5.99842 6.03865 6.11394 6.35312 6.72566 6.76563 7.21761 7.29723 7.54749 7.79970 7.87310 8.03855 8.08830 8.61057 8.84731 9.45689 10.93212 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.002598 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.870198 B =10773.242262 C =12786.028755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.340 3.660 3 N -0.524 5.524 4 C 0.176 3.824 5 C -0.109 4.109 6 C -0.076 4.076 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.152 4.152 10 C 0.186 3.814 11 S 0.070 5.930 12 C -0.152 4.152 13 C 0.523 3.477 14 O -0.519 6.519 15 N -0.587 5.587 16 C 0.246 3.754 17 C -0.532 4.532 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.114 3.886 26 C -0.050 4.050 27 C 0.217 3.783 28 N -0.442 5.442 29 N -0.538 5.538 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 22.530 -3.844 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 N -0.241 5.241 4 C 0.048 3.952 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.161 4.161 10 C -0.082 4.082 11 S 0.310 5.690 12 C -0.303 4.303 13 C 0.307 3.693 14 O -0.395 6.395 15 N -0.318 5.318 16 C 0.127 3.873 17 C -0.571 4.571 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.012 4.012 26 C -0.092 4.092 27 C -0.101 4.101 28 N -0.119 5.119 29 N -0.259 5.259 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.092 22.248 -3.893 22.612 hybrid contribution -0.054 -0.210 0.998 1.022 sum -1.146 22.037 -2.895 22.256 Atomic orbital electron populations 1.20592 0.85657 1.04187 1.03959 1.23134 0.97948 0.83154 0.88888 1.68678 1.08193 1.29062 1.18199 1.18860 0.89431 0.92645 0.94274 1.20706 0.93908 0.96455 1.01806 1.21064 0.93857 0.98732 0.96030 1.20983 1.00774 0.91917 1.00851 1.20974 0.92013 0.99398 0.96283 1.18990 0.95705 0.93565 1.07850 1.24742 0.93194 0.99163 0.91094 1.86483 1.07071 0.88757 1.86671 1.24010 1.01243 0.96226 1.08844 1.19429 0.86756 0.85033 0.78085 1.90746 1.15558 1.83942 1.49249 1.48129 1.04035 1.08700 1.70973 1.19431 0.96641 0.73307 0.97913 1.21349 1.46004 0.97617 0.92115 0.92341 1.24905 0.94939 0.96551 0.97456 1.69905 1.45115 1.07261 1.30834 0.86566 0.78606 0.77748 0.84583 1.20218 1.21157 1.20098 1.21392 0.83094 1.03384 0.93351 1.19866 0.82467 1.05494 1.01349 1.29004 0.94978 0.92934 0.93228 1.81189 1.12792 1.09483 1.08480 1.68646 1.07641 1.29946 1.19643 0.89526 0.89621 0.89564 0.84330 0.84836 0.84843 0.84323 0.85944 0.86186 0.94357 0.93328 0.92518 0.88363 0.90380 0.87649 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.28 36.00 0.37 -0.39 16 2 C 0.34 4.21 7.62 -157.25 -1.20 3.01 16 3 N -0.52 -6.80 10.32 -8.82 -0.09 -6.89 16 4 C 0.18 2.17 6.61 -84.85 -0.56 1.61 16 5 C -0.11 -1.03 10.01 -39.56 -0.40 -1.42 16 6 C -0.08 -0.55 9.95 -39.91 -0.40 -0.95 16 7 C -0.13 -0.98 9.96 -39.88 -0.40 -1.38 16 8 C -0.07 -0.66 9.45 -39.62 -0.37 -1.04 16 9 C -0.15 -1.87 5.76 -106.68 -0.61 -2.48 16 10 C 0.19 2.43 7.08 -15.84 -0.11 2.32 16 11 S 0.07 0.94 19.84 -107.50 -2.13 -1.20 16 12 C -0.15 -1.98 3.93 36.01 0.14 -1.84 16 13 C 0.52 9.13 7.69 -10.99 -0.08 9.04 16 14 O -0.52 -11.32 15.44 5.56 0.09 -11.23 16 15 N -0.59 -10.17 2.46 -175.05 -0.43 -10.60 16 16 C 0.25 5.56 5.16 -5.19 -0.03 5.53 16 17 C -0.53 -13.75 9.39 -34.44 -0.32 -14.08 16 18 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 21 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 26 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 27 C 0.22 2.54 15.43 -20.78 -0.32 2.22 16 28 N -0.44 -6.34 18.53 42.13 0.78 -5.56 16 29 N -0.54 -6.97 9.19 -9.09 -0.08 -7.06 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.29 7.02 -52.49 -0.37 0.92 16 37 H 0.12 1.49 7.40 -51.92 -0.38 1.11 16 38 H 0.12 1.30 7.19 -51.92 -0.37 0.93 16 39 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 44 H 0.11 0.86 7.22 -51.93 -0.38 0.49 16 45 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 406.59 15.07 6.13 6.13 Total: -1.00 -33.60 406.59 -10.18 -43.78 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.56 Total: -1.54 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -4.59 Total: 2.51 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.91 Total: -54.24 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.13 Total: -1.20 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.60 -10.18 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004221421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.222 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds