Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38344 * 119.86978 * 2 1 4 4 C 1.37987 * 120.12251 * 180.02562 * 3 2 1 5 5 C 1.39401 * 119.87494 * 359.97438 * 4 3 2 6 6 C 1.48290 * 120.12339 * 180.02562 * 5 4 3 7 7 N 1.31365 * 126.51329 * 144.98059 * 6 5 4 8 8 N 1.39772 * 109.08172 * 180.02562 * 7 6 5 9 9 C 1.46496 * 125.16177 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47157 * 305.02308 * 9 8 7 11 11 H 1.07994 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99983 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99896 * 359.71887 * 12 10 9 14 14 Si 1.86799 * 120.00083 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47175 * 179.71804 * 14 12 10 16 16 H 1.48501 * 109.46806 * 299.72070 * 14 12 10 17 17 H 1.48500 * 109.47106 * 59.71888 * 14 12 10 18 18 C 1.34156 * 109.67221 * 0.22122 * 8 7 6 19 19 C 1.37959 * 107.89019 * 359.63940 * 18 8 7 20 20 C 1.47289 * 126.81414 * 180.13508 * 19 18 8 21 21 O 1.21621 * 120.00162 * 127.55504 * 20 19 18 22 22 N 1.34777 * 120.00121 * 307.56662 * 20 19 18 23 23 C 1.47155 * 120.97785 * 4.09035 * 22 20 19 24 24 C 1.53708 * 108.16481 * 129.43427 * 23 22 20 25 25 O 1.42972 * 109.14710 * 52.53554 * 24 23 22 26 26 C 1.42963 * 114.16137 * 297.29232 * 25 24 23 27 27 C 1.47148 * 120.98736 * 184.37429 * 22 20 19 28 28 C 1.39359 * 119.74765 * 0.27483 * 5 4 3 29 29 C 1.38034 * 119.87339 * 359.47150 * 28 5 4 30 30 C 1.50697 * 119.93645 * 180.23547 * 29 28 5 31 31 H 1.09002 * 109.47137 * 90.00234 * 1 2 3 32 32 H 1.09004 * 109.46952 * 209.99364 * 1 2 3 33 33 H 1.08992 * 109.47288 * 329.99129 * 1 2 3 34 34 H 1.08003 * 119.93862 * 359.97438 * 3 2 1 35 35 H 1.08008 * 120.05895 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.46936 * 185.01896 * 9 8 7 37 37 H 1.09000 * 109.47245 * 65.02391 * 9 8 7 38 38 H 0.97004 * 119.99848 * 0.27581 * 13 12 10 39 39 H 1.07998 * 126.05573 * 179.77491 * 18 8 7 40 40 H 1.09008 * 109.68111 * 249.21254 * 23 22 20 41 41 H 1.09000 * 109.68327 * 9.76402 * 23 22 20 42 42 H 1.08999 * 109.65811 * 292.57409 * 24 23 22 43 43 H 1.08999 * 109.49299 * 172.39502 * 24 23 22 44 44 H 1.08995 * 109.51620 * 302.65278 * 26 25 24 45 45 H 1.09010 * 109.55036 * 182.52752 * 26 25 24 46 46 H 1.09001 * 109.67990 * 350.23262 * 27 22 20 47 47 H 1.08996 * 109.68135 * 110.74430 * 27 22 20 48 48 H 1.08001 * 120.06288 * 179.72782 * 28 5 4 49 49 H 1.08998 * 109.46686 * 270.29307 * 30 29 28 50 50 H 1.08999 * 109.47239 * 30.29269 * 30 29 28 51 51 H 1.08996 * 109.47162 * 150.29830 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5759 1.2058 -0.0005 5 6 4.2756 0.0001 -0.0005 6 6 5.7585 0.0002 -0.0005 7 7 6.5402 -0.8644 0.6053 8 7 7.8737 -0.5211 0.3656 9 6 9.0374 -1.2494 0.8768 10 6 8.9406 -1.3619 2.3765 11 1 8.0968 -0.9333 2.8967 12 6 9.9297 -2.0110 3.0845 13 7 10.9550 -2.5368 2.4505 14 14 9.8093 -2.1510 4.9433 15 1 10.9859 -2.8945 5.4609 16 1 9.7803 -0.7920 5.5412 17 1 8.5660 -2.8778 5.3055 18 6 7.9261 0.5798 -0.3994 19 6 6.6307 0.9655 -0.6763 20 6 6.2078 2.1210 -1.4858 21 8 5.4222 1.9671 -2.4014 22 7 6.6916 3.3488 -1.2121 23 6 7.7101 3.5463 -0.1685 24 6 8.8589 4.3715 -0.7701 25 8 8.3235 5.5556 -1.3662 26 6 7.4303 5.3101 -2.4552 27 6 6.2125 4.5322 -1.9437 28 6 3.5762 -1.2053 -0.0058 29 6 2.1959 -1.1993 0.0001 30 6 1.4382 -2.5019 -0.0002 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8898 0.5139 34 1 1.6529 2.1332 -0.0004 35 1 4.1128 2.1430 -0.0001 36 1 9.9478 -0.7123 0.6107 37 1 9.0630 -2.2471 0.4386 38 1 11.0173 -2.4645 1.4852 39 1 8.8233 1.0750 -0.7401 40 1 7.2728 4.0808 0.6748 41 1 8.0867 2.5792 0.1647 42 1 9.3747 3.7833 -1.5290 43 1 9.5608 4.6459 0.0173 44 1 7.9410 4.7252 -3.2202 45 1 7.1037 6.2593 -2.8802 46 1 5.5969 4.2183 -2.7867 47 1 5.6264 5.1639 -1.2763 48 1 4.1131 -2.1424 -0.0103 49 1 1.2557 -2.8158 -1.0280 50 1 2.0246 -3.2635 0.5136 51 1 0.4861 -2.3685 0.5133 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = 15.646941 kcal Electronic energy + Delta-G solvation = -33782.540668 eV Core-core repulsion = 29455.231588 eV Total energy + Delta-G solvation = -4327.309080 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.97077 -39.80830 -39.23767 -38.04100 -34.74820 -34.47769 -33.49050 -32.22669 -31.88170 -31.23614 -30.00991 -28.06044 -27.69931 -27.01329 -25.89423 -24.30494 -23.48160 -22.92454 -22.07345 -21.50535 -20.65748 -19.69176 -18.90697 -17.58053 -16.90839 -16.66173 -16.41284 -15.79479 -15.55901 -15.53044 -15.32130 -15.18701 -14.86226 -14.60808 -14.35560 -14.19022 -13.87998 -13.86096 -13.59770 -13.16425 -12.86580 -12.82424 -12.67979 -12.64921 -12.54014 -12.40865 -12.14730 -11.92428 -11.88034 -11.62549 -11.59677 -11.31719 -10.96462 -10.91657 -10.86156 -10.85323 -10.42644 -10.29216 -10.24058 -9.72896 -9.55818 -8.95237 -8.71037 -8.64242 -8.58547 -8.30031 -7.78721 -6.71466 -4.47213 1.22331 1.56273 2.04730 2.66808 2.80263 3.10165 3.26819 3.30551 3.33438 3.51851 3.60944 3.99496 4.30078 4.50482 4.56677 4.72565 4.80740 4.83839 4.87471 4.93117 4.99600 5.03910 5.06224 5.08595 5.14520 5.24567 5.33271 5.41139 5.41479 5.47598 5.52786 5.58117 5.60806 5.64450 5.65615 5.76621 5.79680 5.80710 5.84214 5.90534 6.19856 6.21247 6.32082 6.38184 6.44755 6.55026 6.69481 6.76703 6.85513 6.90471 7.13431 7.34607 7.39796 7.49585 8.15926 8.18214 8.31263 8.46063 9.21065 10.66439 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.005351 B = 0.004138 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5231.228154 B = 6764.547002 C =11093.610532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.085 4.085 5 C 0.001 3.999 6 C 0.129 3.871 7 N -0.252 5.252 8 N -0.308 5.308 9 C 0.242 3.758 10 C -0.612 4.612 11 H 0.065 0.935 12 C 0.027 3.973 13 N -0.901 5.901 14 Si 1.075 2.925 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.086 3.914 19 C -0.302 4.302 20 C 0.608 3.392 21 O -0.535 6.535 22 N -0.618 5.618 23 C 0.066 3.934 24 C 0.047 3.953 25 O -0.381 6.381 26 C 0.048 3.952 27 C 0.079 3.921 28 C -0.086 4.086 29 C -0.091 4.091 30 C -0.115 4.115 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.175 0.825 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.127 0.873 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 11.888 -7.310 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.104 4.104 5 C -0.001 4.001 6 C -0.037 4.037 7 N -0.073 5.073 8 N -0.085 5.085 9 C 0.124 3.876 10 C -0.650 4.650 11 H 0.084 0.916 12 C -0.178 4.178 13 N -0.535 5.535 14 Si 0.902 3.098 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.066 4.066 19 C -0.318 4.318 20 C 0.398 3.602 21 O -0.411 6.411 22 N -0.353 5.353 23 C -0.057 4.057 24 C -0.030 4.030 25 O -0.299 6.299 26 C -0.029 4.029 27 C -0.044 4.044 28 C -0.105 4.105 29 C -0.091 4.091 30 C -0.171 4.171 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.192 0.808 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.145 0.855 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.818 10.196 -5.606 16.585 hybrid contribution -0.428 1.156 -1.952 2.309 sum -12.246 11.353 -7.558 18.329 Atomic orbital electron populations 1.20839 0.91482 1.02626 1.02145 1.19750 0.95784 0.92611 1.00613 1.20796 0.93597 0.97345 1.01849 1.20946 0.93925 0.96770 0.98786 1.17642 0.87655 0.93633 1.01132 1.21635 0.92484 0.92721 0.96882 1.77461 0.87116 1.21691 1.21066 1.48917 1.06139 1.19461 1.33942 1.19940 0.78596 0.91911 0.97121 1.22042 1.11307 1.41975 0.89654 0.91626 1.25924 0.91940 0.92386 1.07583 1.70870 1.29959 1.41862 1.10855 0.83431 0.76402 0.76805 0.73179 1.20429 1.21120 1.20990 1.22738 0.97727 0.91049 0.95075 1.20800 0.92126 1.03354 1.15513 1.17338 0.79483 0.81243 0.82135 1.90750 1.35424 1.84788 1.30186 1.48036 1.42417 1.06524 1.38351 1.22688 0.89486 1.02774 0.90749 1.23095 0.94913 0.86940 0.98067 1.87956 1.62626 1.30364 1.48949 1.22981 0.90174 1.00788 0.89003 1.22236 0.97158 0.86738 0.98249 1.21074 0.93204 0.97509 0.98725 1.19608 0.93267 0.94930 1.01317 1.20833 0.99886 0.94175 1.02213 0.91311 0.91235 0.91802 0.86094 0.86686 0.93469 0.94216 0.92257 0.80797 0.90495 0.87735 0.92530 0.87406 0.92636 0.87770 0.88060 0.90835 0.85526 0.91303 0.91483 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.60 36.01 0.35 -0.72 16 2 C -0.09 -1.13 5.88 -104.56 -0.62 -1.74 16 3 C -0.12 -1.62 9.68 -39.63 -0.38 -2.00 16 4 C -0.08 -1.37 8.88 -39.24 -0.35 -1.72 16 5 C 0.00 0.02 5.84 -104.91 -0.61 -0.59 16 6 C 0.13 2.59 6.94 -80.56 -0.56 2.03 16 7 N -0.25 -5.63 12.28 34.58 0.42 -5.21 16 8 N -0.31 -6.58 3.62 -62.04 -0.22 -6.81 16 9 C 0.24 5.65 5.52 -5.20 -0.03 5.62 16 10 C -0.61 -16.16 9.21 -34.44 -0.32 -16.48 16 11 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 13 N -0.90 -25.05 13.65 55.43 0.76 -24.29 16 14 Si 1.08 23.91 29.90 -169.99 -5.08 18.83 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.09 1.53 9.14 -16.64 -0.15 1.37 16 19 C -0.30 -5.49 5.36 -102.95 -0.55 -6.04 16 20 C 0.61 10.17 5.87 -12.58 -0.07 10.10 16 21 O -0.54 -10.28 16.23 5.26 0.09 -10.20 16 22 N -0.62 -8.24 3.01 -173.34 -0.52 -8.76 16 23 C 0.07 0.78 6.49 -3.32 -0.02 0.76 16 24 C 0.05 0.48 7.00 37.53 0.26 0.74 16 25 O -0.38 -4.19 10.74 -35.23 -0.38 -4.57 16 26 C 0.05 0.45 6.98 37.31 0.26 0.71 16 27 C 0.08 0.86 6.65 -3.54 -0.02 0.84 16 28 C -0.09 -1.43 9.41 -39.24 -0.37 -1.80 16 29 C -0.09 -1.27 5.87 -104.67 -0.61 -1.89 16 30 C -0.11 -1.23 9.60 36.00 0.35 -0.88 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.57 5.93 -51.93 -0.31 0.26 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.12 1.85 6.85 -52.48 -0.36 1.49 16 36 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 37 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 38 H 0.27 7.23 7.22 -40.82 -0.29 6.94 16 39 H 0.18 2.41 7.51 -52.49 -0.39 2.01 16 40 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.10 1.34 4.19 -51.93 -0.22 1.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.10 1.16 7.06 -51.93 -0.37 0.80 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 51 H 0.07 0.61 5.93 -51.93 -0.31 0.31 16 LS Contribution 416.00 15.07 6.27 6.27 Total: -1.00 -32.70 416.00 -9.58 -42.28 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.35 Total: 3.53 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.56 Total: -11.07 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.43 Total: -45.07 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.29 Total: -14.77 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.83 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.70 -9.58 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.923 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds