Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35805 * 116.99877 * 2 1 4 4 C 1.38842 * 119.92684 * 359.72888 * 3 2 1 5 5 C 1.37788 * 120.15116 * 179.76436 * 4 3 2 6 6 C 1.39726 * 120.00000 * 0.50523 * 5 4 3 7 7 C 1.47563 * 120.07042 * 179.76509 * 6 5 4 8 8 O 1.21626 * 119.99672 * 179.97438 * 7 6 5 9 9 N 1.34773 * 120.00170 * 359.97438 * 7 6 5 10 10 N 1.40092 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.29852 * 120.00252 * 180.02562 * 10 9 7 12 12 C 1.47352 * 119.99910 * 180.02562 * 11 10 9 13 13 C 1.39816 * 120.08626 * 359.71840 * 12 11 10 14 14 C 1.37717 * 119.90694 * 179.76754 * 13 12 11 15 15 C 1.39085 * 120.09020 * 0.53554 * 14 13 12 16 16 O 1.35651 * 119.91334 * 179.71992 * 15 14 13 17 17 C 1.34803 * 116.99728 * 174.42635 * 16 15 14 18 18 H 1.08002 * 120.00591 * 5.05962 * 17 16 15 19 19 C 1.38647 * 119.99773 * 185.05523 * 17 16 15 20 20 N 1.31555 * 120.00229 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99879 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46833 * 60.00057 * 21 19 17 23 23 H 1.48495 * 109.46923 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47005 * 299.99905 * 21 19 17 25 25 C 1.39085 * 120.17257 * 359.69692 * 15 14 13 26 26 C 1.37715 * 120.09073 * 0.04561 * 25 15 14 27 27 C 1.39755 * 119.85736 * 359.74972 * 6 5 4 28 28 C 1.38143 * 119.84533 * 359.97438 * 27 6 5 29 29 O 1.35996 * 119.99944 * 180.02562 * 28 27 6 30 30 C 1.42899 * 116.99932 * 359.97438 * 29 28 27 31 31 H 1.09008 * 109.47053 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47347 * 299.99434 * 1 2 3 33 33 H 1.08999 * 109.47727 * 59.99572 * 1 2 3 34 34 H 1.07999 * 119.92218 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.99576 * 180.23254 * 5 4 3 36 36 H 0.97006 * 119.99626 * 0.02562 * 9 7 6 37 37 H 1.07994 * 120.00268 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.04709 * 0.02759 * 13 12 11 39 39 H 1.07996 * 119.95566 * 180.25538 * 14 13 12 40 40 H 0.96999 * 120.00731 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.95503 * 180.02562 * 25 15 14 42 42 H 1.07997 * 120.04344 * 180.02562 * 26 25 15 43 43 H 1.07991 * 120.07949 * 180.02562 * 27 6 5 44 44 H 1.09010 * 109.46909 * 179.97438 * 30 29 28 45 45 H 1.08998 * 109.47458 * 299.99707 * 30 29 28 46 46 H 1.09004 * 109.46987 * 60.00289 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2100 0.0000 4 6 1.2877 2.3735 -0.0057 5 6 1.9084 3.6036 -0.0008 6 6 3.3035 3.6823 -0.0008 7 6 3.9698 4.9989 -0.0008 8 8 5.1842 5.0658 -0.0003 9 7 3.2327 6.1272 -0.0014 10 7 3.8653 7.3772 -0.0009 11 6 3.1551 8.4643 -0.0009 12 6 3.8205 9.7790 -0.0009 13 6 5.2165 9.8581 0.0051 14 6 5.8346 11.0887 0.0002 15 6 5.0721 12.2520 0.0006 16 8 5.6847 13.4623 0.0015 17 6 4.8945 14.5482 -0.1148 18 1 3.8203 14.4363 -0.1210 19 6 5.4607 15.8088 -0.2264 20 7 6.7692 15.9452 -0.2193 21 14 4.3656 17.3137 -0.3869 22 1 3.4899 17.4183 0.8078 23 1 5.2096 18.5311 -0.4908 24 1 3.5270 17.1879 -1.6060 25 6 3.6833 12.1775 -0.0005 26 6 3.0576 10.9507 -0.0009 27 6 4.0663 2.5113 -0.0004 28 6 3.4377 1.2812 0.0005 29 8 4.1770 0.1398 0.0013 30 6 5.5983 0.2874 0.0007 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.2094 2.3141 -0.0097 35 1 1.3166 4.5070 -0.0015 36 1 2.2641 6.0738 -0.0014 37 1 2.0768 8.4049 -0.0018 38 1 5.8092 8.9553 0.0092 39 1 6.9127 11.1507 0.0006 40 1 7.1654 16.8271 -0.2978 41 1 3.0947 13.0830 -0.0006 42 1 1.9791 10.8938 -0.0022 43 1 5.1448 2.5679 0.0000 44 1 6.0659 -0.6973 0.0020 45 1 5.9064 0.8351 -0.8899 46 1 5.9069 0.8369 0.8902 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006457908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = -30.346943 kcal Electronic energy + Delta-G solvation = -30427.887244 eV Core-core repulsion = 25865.031963 eV Total energy + Delta-G solvation = -4562.855281 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.17575 -39.64465 -39.11029 -38.92906 -37.24659 -36.84502 -35.82960 -32.76138 -32.22696 -30.94041 -30.75828 -30.33445 -28.71328 -27.72929 -27.53554 -25.63180 -24.15717 -22.94725 -22.41351 -21.99233 -20.79747 -20.32010 -19.21422 -18.21812 -18.04344 -17.45538 -17.14799 -16.70288 -16.57956 -16.38680 -15.70178 -15.29746 -15.12271 -15.01066 -14.94220 -14.82695 -14.59944 -14.25763 -13.77926 -13.60774 -13.54424 -13.24265 -13.14918 -12.83541 -12.63053 -12.57018 -12.46905 -11.84304 -11.79894 -11.70133 -11.65901 -11.49122 -11.30954 -11.23384 -10.93563 -10.81862 -10.54224 -10.21124 -9.95636 -9.45448 -9.31700 -9.23888 -8.77106 -8.35934 -8.30073 -7.13165 -6.59125 -4.15670 0.38878 0.80142 1.39360 2.20053 2.43770 2.52427 2.70418 2.81363 2.95269 3.06219 3.10512 3.11523 3.49649 3.86045 4.18168 4.24939 4.37517 4.55002 4.56058 4.64887 4.65227 4.74099 4.85142 4.85270 4.85964 4.98428 4.99551 5.09280 5.13542 5.17867 5.19066 5.44210 5.55490 5.60942 5.73451 5.76656 5.93327 6.02524 6.13514 6.33242 6.51759 6.61091 6.79316 6.94627 7.02380 7.03432 7.17682 7.19258 7.31222 7.60378 7.69384 7.85559 8.42468 8.85307 9.53036 10.57581 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.001291 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.483131 B =21686.590094 C =22725.714721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.126 3.874 4 C -0.181 4.181 5 C -0.081 4.081 6 C -0.126 4.126 7 C 0.577 3.423 8 O -0.506 6.506 9 N -0.582 5.582 10 N -0.266 5.266 11 C 0.152 3.848 12 C -0.174 4.174 13 C -0.025 4.025 14 C -0.201 4.201 15 C 0.169 3.831 16 O -0.165 6.165 17 C -0.394 4.394 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.853 5.853 21 Si 0.944 3.056 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.033 4.033 27 C -0.111 4.111 28 C 0.093 3.907 29 O -0.305 6.305 30 C 0.022 3.978 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.377 0.623 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.152 0.848 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 -28.422 0.295 31.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.079 3.921 4 C -0.200 4.200 5 C -0.100 4.100 6 C -0.131 4.131 7 C 0.365 3.635 8 O -0.379 6.379 9 N -0.323 5.323 10 N -0.071 5.071 11 C -0.056 4.056 12 C -0.179 4.179 13 C -0.045 4.045 14 C -0.220 4.220 15 C 0.113 3.887 16 O -0.066 6.066 17 C -0.470 4.470 18 H 0.113 0.887 19 C -0.164 4.164 20 N -0.487 5.487 21 Si 0.768 3.232 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.261 4.261 26 C -0.054 4.054 27 C -0.131 4.131 28 C 0.048 3.952 29 O -0.218 6.218 30 C -0.073 4.073 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.216 0.784 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.131 0.869 43 H 0.170 0.830 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.302 -29.033 0.299 31.533 hybrid contribution -2.150 1.272 -0.074 2.500 sum -14.453 -27.761 0.225 31.298 Atomic orbital electron populations 1.23154 0.78090 1.04389 1.01535 1.86160 1.21425 1.25736 1.88160 1.18505 0.89168 0.85377 0.99035 1.20984 1.00324 0.91008 1.07633 1.21004 0.93050 0.97644 0.98270 1.19504 0.93353 0.92560 1.07689 1.17764 0.86841 0.82216 0.76697 1.90801 1.13211 1.86810 1.47100 1.46772 1.08104 1.03581 1.73849 1.75157 1.24541 0.89592 1.17847 1.24458 0.96486 0.91410 0.93210 1.17775 0.93207 0.88976 1.17910 1.20918 0.93297 0.96630 0.93631 1.20203 0.99688 0.90019 1.12117 1.19601 0.91191 0.86897 0.91043 1.83944 1.35840 1.10740 1.76028 1.21385 0.90586 0.82740 1.52259 0.88660 1.25365 0.96526 0.98434 0.96114 1.70026 1.09630 1.24831 1.44169 0.85733 0.78950 0.79188 0.79329 1.19327 1.20151 1.19326 1.21036 0.94439 0.97971 1.12690 1.20774 0.98183 0.91158 0.95299 1.21156 1.01407 0.89441 1.01085 1.18064 0.88288 0.86112 1.02765 1.86176 1.19161 1.27513 1.89000 1.23167 0.78012 1.04207 1.01903 0.87912 0.92369 0.92362 0.83913 0.85131 0.78433 0.87588 0.85634 0.86078 0.91633 0.85061 0.86894 0.83017 0.87871 0.92247 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.61 10.27 -33.79 -0.35 -2.96 16 3 C 0.13 1.15 6.71 -38.92 -0.26 0.88 16 4 C -0.18 -1.26 9.01 -39.52 -0.36 -1.62 16 5 C -0.08 -0.62 9.53 -39.19 -0.37 -0.99 16 6 C -0.13 -1.35 5.87 -104.97 -0.62 -1.97 16 7 C 0.58 8.08 7.88 -12.46 -0.10 7.99 16 8 O -0.51 -9.14 16.68 5.25 0.09 -9.05 16 9 N -0.58 -7.41 6.21 30.47 0.19 -7.22 16 10 N -0.27 -4.20 10.15 32.14 0.33 -3.87 16 11 C 0.15 2.13 10.75 -14.68 -0.16 1.97 16 12 C -0.17 -2.95 5.87 -105.01 -0.62 -3.56 16 13 C -0.02 -0.46 9.57 -39.18 -0.37 -0.83 16 14 C -0.20 -4.21 9.97 -39.46 -0.39 -4.60 16 15 C 0.17 3.92 6.65 -38.95 -0.26 3.66 16 16 O -0.16 -4.52 9.75 0.43 0.00 -4.51 16 17 C -0.39 -10.47 9.48 30.88 0.29 -10.17 16 18 H 0.10 2.29 5.19 -52.49 -0.27 2.02 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.85 -24.10 13.67 55.48 0.76 -23.35 16 21 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.24 -4.86 9.15 -39.46 -0.36 -5.22 16 26 C -0.03 -0.56 9.78 -39.18 -0.38 -0.94 16 27 C -0.11 -1.17 8.58 -39.05 -0.33 -1.51 16 28 C 0.09 0.95 6.69 -39.18 -0.26 0.69 16 29 O -0.30 -3.05 10.28 -34.39 -0.35 -3.41 16 30 C 0.02 0.15 9.81 101.05 0.99 1.14 16 31 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 33 H 0.06 0.17 7.64 -51.93 -0.40 -0.23 16 34 H 0.14 0.57 6.27 -52.49 -0.33 0.24 16 35 H 0.13 0.65 6.39 -52.49 -0.34 0.31 16 36 H 0.38 3.25 6.67 -182.60 -1.22 2.03 16 37 H 0.11 1.07 8.02 -52.49 -0.42 0.65 16 38 H 0.13 2.30 7.55 -52.49 -0.40 1.90 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 2.59 5.62 -52.49 -0.29 2.29 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.15 1.57 5.87 -52.49 -0.31 1.26 16 44 H 0.10 0.46 8.14 -51.92 -0.42 0.03 16 45 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 46 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -35.13 401.39 -6.97 -42.10 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.99 Total: 4.75 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.67 Total: -13.00 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 1.27 Total: -34.44 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.61 Total: -19.93 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.13 -6.97 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006457908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.757 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds