Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.46967 * 2 1 4 4 C 1.35944 * 116.99783 * 180.02562 * 3 2 1 5 5 C 1.38565 * 120.08876 * 359.97438 * 4 3 2 6 6 C 1.38240 * 120.01189 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.90481 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.85554 * 32.31189 * 7 6 5 9 9 N 1.47452 * 110.95995 * 156.12861 * 7 6 5 10 10 N 1.37715 * 114.24483 * 117.90324 * 9 7 6 11 11 C 1.29256 * 121.89051 * 0.47279 * 10 9 7 12 12 C 1.47844 * 126.82955 * 179.82398 * 11 10 9 13 13 C 1.39575 * 120.14476 * 359.68232 * 12 11 10 14 14 C 1.37959 * 119.85445 * 180.02562 * 13 12 11 15 15 C 1.38351 * 120.14665 * 0.02562 * 14 13 12 16 16 C 1.38367 * 120.29010 * 0.27351 * 15 14 13 17 17 C 1.37962 * 120.14241 * 359.44214 * 16 15 14 18 18 S 1.77713 * 106.34289 * 359.55983 * 11 10 9 19 19 C 1.38318 * 120.18388 * 0.27457 * 6 5 4 20 20 C 1.38151 * 120.17233 * 359.48969 * 19 6 5 21 21 C 1.38761 * 119.98414 * 0.49054 * 20 19 6 22 22 O 1.35806 * 120.09063 * 179.74828 * 21 20 19 23 23 C 1.34804 * 116.99997 * 354.39737 * 22 21 20 24 24 H 1.08003 * 120.00171 * 5.06565 * 23 22 21 25 25 C 1.38643 * 119.99893 * 185.06472 * 23 22 21 26 26 N 1.31566 * 120.00157 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99880 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47143 * 90.00149 * 27 25 23 29 29 H 1.48503 * 109.47225 * 209.99952 * 27 25 23 30 30 H 1.48500 * 109.47289 * 329.99898 * 27 25 23 31 31 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47646 * 300.00029 * 1 2 3 33 33 H 1.09002 * 109.47207 * 60.00694 * 1 2 3 34 34 H 1.08996 * 109.47646 * 239.99971 * 2 1 3 35 35 H 1.09002 * 109.47207 * 119.99306 * 2 1 3 36 36 H 1.07998 * 119.99105 * 359.97438 * 5 4 3 37 37 H 0.97000 * 122.88119 * 298.12064 * 9 7 6 38 38 H 1.08003 * 120.06929 * 0.04743 * 13 12 11 39 39 H 1.08000 * 119.92725 * 179.97438 * 14 13 12 40 40 H 1.07995 * 119.85655 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.92604 * 179.72396 * 16 15 14 42 42 H 1.07995 * 120.07387 * 180.29478 * 17 16 15 43 43 H 1.08004 * 119.91045 * 179.74727 * 19 6 5 44 44 H 1.08008 * 120.00988 * 180.25504 * 20 19 6 45 45 H 0.96999 * 119.99865 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3540 1.5255 -0.0005 5 6 4.1998 0.4279 -0.0005 6 6 5.5700 0.6108 -0.0016 7 6 6.4876 -0.5846 -0.0010 8 1 6.0407 -1.4171 -0.5443 9 7 7.8073 -0.2369 -0.5595 10 7 8.8520 -0.3813 0.3261 11 6 8.6689 -0.7972 1.5362 12 6 9.7054 -0.9950 2.5717 13 6 11.0450 -0.7309 2.2820 14 6 12.0073 -0.9181 3.2526 15 6 11.6472 -1.3670 4.5107 16 6 10.3218 -1.6366 4.8026 17 6 9.3489 -1.4480 3.8428 18 16 6.9225 -1.0764 1.7101 19 6 6.1011 1.8880 0.0030 20 6 5.2649 2.9877 -0.0019 21 6 3.8884 2.8123 -0.0012 22 8 3.0645 3.8918 -0.0009 23 6 3.6434 5.1036 0.1160 24 1 4.7200 5.1894 0.1216 25 6 2.8568 6.2396 0.2291 26 7 1.5453 6.1350 0.2229 27 14 3.6591 7.9187 0.3919 28 1 3.8685 8.5002 -0.9584 29 1 2.7783 8.8134 1.1849 30 1 4.9682 7.7774 1.0785 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5137 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.7884 -0.5707 0.0003 37 1 7.9288 0.0704 -1.4714 38 1 11.3274 -0.3805 1.3002 39 1 13.0443 -0.7145 3.0296 40 1 12.4044 -1.5123 5.2669 41 1 10.0478 -1.9911 5.7853 42 1 8.3141 -1.6542 4.0732 43 1 7.1723 2.0258 0.0063 44 1 5.6825 3.9838 -0.0024 45 1 0.9951 6.9299 0.3017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006960621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = 48.581338 kcal Electronic energy + Delta-G solvation = -29437.788046 eV Core-core repulsion = 25321.108223 eV Total energy + Delta-G solvation = -4116.679823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.83610 -39.38997 -38.25421 -37.70254 -36.23955 -33.21027 -32.35965 -31.46601 -31.18604 -30.67377 -29.47486 -28.41563 -26.12273 -25.00407 -23.71222 -23.45988 -22.73460 -21.43888 -21.03796 -20.17138 -18.64754 -18.10835 -17.67692 -17.11300 -16.53017 -15.84476 -15.65407 -15.64582 -15.40974 -15.02118 -14.82380 -14.53917 -14.13260 -13.96964 -13.78323 -13.66754 -13.52757 -13.31146 -13.20963 -12.52275 -12.41468 -12.37302 -12.25213 -11.96707 -11.72446 -11.59165 -11.40041 -11.33886 -11.19547 -11.16089 -10.80856 -10.67677 -10.46412 -10.24182 -9.84932 -9.75660 -9.52572 -9.17408 -8.91031 -8.67681 -8.00736 -7.37761 -7.01902 -6.52217 -4.07147 0.64240 1.12900 1.19131 1.81914 2.08156 2.19997 2.38750 2.66874 3.09184 3.10593 3.15334 3.66776 3.80796 3.89699 4.21948 4.43740 4.71403 4.74603 4.82586 4.89804 4.97152 4.99937 5.08749 5.12700 5.20758 5.26129 5.31533 5.40173 5.47532 5.64531 5.66933 5.69610 5.77939 5.81723 6.05442 6.07916 6.22128 6.23636 6.27107 6.27426 6.35898 6.47223 6.70322 6.74530 6.91611 7.12382 7.16714 7.26020 7.49018 7.87586 7.93589 8.10330 8.91495 9.60026 10.64251 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.002501 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.849411 B =11191.502611 C =13193.943419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.299 6.299 4 C 0.063 3.937 5 C -0.143 4.143 6 C -0.177 4.177 7 C 0.232 3.768 8 H 0.106 0.894 9 N -0.608 5.608 10 N -0.230 5.230 11 C 0.121 3.879 12 C 0.002 3.998 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.092 4.092 18 S -0.196 6.196 19 C -0.062 4.062 20 C -0.215 4.215 21 C 0.145 3.855 22 O -0.155 6.155 23 C -0.391 4.391 24 H 0.094 0.906 25 C 0.041 3.959 26 N -0.851 5.851 27 Si 0.942 3.058 28 H -0.272 1.272 29 H -0.276 1.276 30 H -0.266 1.266 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.439 0.561 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.135 0.865 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.612 -16.025 3.540 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.214 6.214 4 C 0.017 3.983 5 C -0.165 4.165 6 C -0.182 4.182 7 C 0.016 3.984 8 H 0.123 0.877 9 N -0.354 5.354 10 N -0.044 5.044 11 C -0.178 4.178 12 C -0.002 4.002 13 C -0.106 4.106 14 C -0.139 4.139 15 C -0.131 4.131 16 C -0.136 4.136 17 C -0.113 4.113 18 S 0.036 5.964 19 C -0.082 4.082 20 C -0.235 4.235 21 C 0.088 3.912 22 O -0.057 6.057 23 C -0.467 4.467 24 H 0.111 0.889 25 C -0.164 4.164 26 N -0.484 5.484 27 Si 0.766 3.234 28 H -0.198 1.198 29 H -0.201 1.201 30 H -0.190 1.190 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.286 0.714 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.153 0.847 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.818 -15.856 3.782 20.737 hybrid contribution 0.450 0.969 -0.875 1.381 sum 13.268 -14.886 2.907 20.152 Atomic orbital electron populations 1.21729 0.93333 1.01891 1.03759 1.22616 0.95600 0.83437 1.00322 1.86246 1.18545 1.27031 1.89530 1.18013 0.82415 0.91252 1.06588 1.20346 0.92552 0.96645 1.06914 1.18872 0.92247 0.92920 1.14188 1.23089 0.86853 0.98127 0.90324 0.87679 1.48766 0.98067 1.75416 1.13143 1.71827 1.17122 1.12610 1.02797 1.24896 0.93850 1.06325 0.92744 1.17503 0.90261 1.01696 0.90755 1.21254 0.91191 0.98163 1.00033 1.21091 0.99435 1.00053 0.93335 1.21285 0.96321 0.98692 0.96841 1.21050 0.92802 1.00447 0.99284 1.21204 1.00133 0.98122 0.91805 1.87040 1.04888 1.83547 1.20957 1.20377 0.98496 0.91123 0.98223 1.20864 0.91768 0.99522 1.11365 1.18715 0.89559 0.86514 0.96367 1.84061 1.32687 1.12165 1.76756 1.21410 0.92847 0.80516 1.51952 0.88890 1.25335 0.95417 0.99389 0.96305 1.70067 1.03591 1.30431 1.44317 0.85699 0.78901 0.80024 0.78769 1.19762 1.20112 1.19037 0.91113 0.91510 0.91568 0.92984 0.92883 0.86316 0.71352 0.85053 0.85550 0.85815 0.85437 0.85374 0.87378 0.84695 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.59 16 2 C 0.06 0.86 5.46 37.16 0.20 1.06 16 3 O -0.30 -6.41 9.92 -34.00 -0.34 -6.75 16 4 C 0.06 1.36 6.70 -39.05 -0.26 1.10 16 5 C -0.14 -2.55 8.71 -39.46 -0.34 -2.89 16 6 C -0.18 -3.01 5.21 -104.59 -0.54 -3.56 16 7 C 0.23 3.32 4.41 -4.67 -0.02 3.30 16 8 H 0.11 1.32 8.13 -51.93 -0.42 0.90 16 9 N -0.61 -8.11 5.93 -7.72 -0.05 -8.16 16 10 N -0.23 -3.27 11.40 33.11 0.38 -2.89 16 11 C 0.12 1.71 7.54 -14.71 -0.11 1.60 16 12 C 0.00 0.03 5.87 -104.97 -0.62 -0.59 16 13 C -0.08 -0.89 9.70 -39.19 -0.38 -1.27 16 14 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 15 C -0.11 -0.88 10.04 -39.49 -0.40 -1.28 16 16 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 17 C -0.09 -1.00 9.65 -39.19 -0.38 -1.37 16 18 S -0.20 -2.89 21.96 -107.50 -2.36 -5.25 16 19 C -0.06 -1.15 9.35 -39.58 -0.37 -1.52 16 20 C -0.22 -4.66 9.16 -39.42 -0.36 -5.02 16 21 C 0.14 3.52 6.66 -38.98 -0.26 3.26 16 22 O -0.15 -4.43 9.54 -14.48 -0.14 -4.57 16 23 C -0.39 -10.83 9.49 30.88 0.29 -10.54 16 24 H 0.09 2.37 5.21 -52.48 -0.27 2.09 16 25 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 26 N -0.85 -24.78 13.67 55.48 0.76 -24.02 16 27 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 29 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 30 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 35 H 0.05 0.74 7.66 -51.93 -0.40 0.35 16 36 H 0.12 1.78 6.30 -52.49 -0.33 1.44 16 37 H 0.44 4.98 8.96 -184.36 -1.65 3.33 16 38 H 0.13 1.32 7.88 -52.48 -0.41 0.91 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.37 7.43 -52.49 -0.39 0.98 16 43 H 0.11 1.89 7.30 -52.48 -0.38 1.51 16 44 H 0.14 2.90 5.64 -52.48 -0.30 2.61 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -32.35 396.19 -11.49 -43.84 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.63 Total: 7.71 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -4.06 Total: -21.12 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 1.09 Total: -35.08 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.48 Total: -11.32 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.36 Total: -5.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.35 -11.49 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006960621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.422 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds