Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 C 1.50695 * 109.47338 * 119.99963 * 2 1 3 5 5 C 1.38236 * 119.99902 * 120.00546 * 4 2 1 6 6 C 1.38238 * 119.99971 * 180.02562 * 5 4 2 7 7 C 1.38228 * 120.00104 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00335 * 179.97438 * 7 6 5 9 9 C 1.52998 * 110.53466 * 268.62840 * 8 7 6 10 10 N 1.47316 * 110.59571 * 31.45327 * 8 7 6 11 11 C 1.34530 * 106.61941 * 118.52799 * 10 8 7 12 12 O 1.21530 * 123.77195 * 180.02562 * 11 10 8 13 13 N 1.33794 * 112.45342 * 359.97438 * 11 10 8 14 14 C 1.46506 * 124.17371 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47101 * 270.02524 * 14 13 11 16 16 H 1.08998 * 109.46952 * 304.99742 * 15 14 13 17 17 C 1.47201 * 109.47287 * 64.99945 * 15 14 13 18 18 N 9.24420 * 157.64897 * 169.76556 * 4 1 2 19 19 C 1.53001 * 109.47085 * 185.00090 * 15 14 13 20 20 C 1.50701 * 109.47068 * 175.00024 * 19 15 14 21 21 H 1.07997 * 120.00252 * 359.97438 * 20 19 15 22 22 C 1.37881 * 119.99638 * 180.02562 * 20 19 15 23 23 N 1.31518 * 119.99653 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00320 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47425 * 89.99827 * 24 22 20 26 26 H 1.48503 * 109.47371 * 210.00163 * 24 22 20 27 27 H 1.48504 * 109.47116 * 330.00227 * 24 22 20 28 28 C 1.34760 * 111.64866 * 359.97438 * 13 11 10 29 29 O 1.21238 * 127.16227 * 179.97438 * 28 13 11 30 30 C 1.38238 * 120.00190 * 0.25520 * 7 6 5 31 31 C 1.38236 * 120.00202 * 300.02114 * 4 2 1 32 32 H 1.09002 * 109.47355 * 299.99518 * 1 2 3 33 33 H 1.09002 * 109.47670 * 59.99766 * 1 2 3 34 34 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47355 * 240.00482 * 2 1 3 36 36 H 1.09002 * 109.46693 * 60.00077 * 3 2 1 37 37 H 1.08998 * 109.47317 * 180.02562 * 3 2 1 38 38 H 1.09002 * 109.47120 * 300.00570 * 3 2 1 39 39 H 1.08000 * 119.99874 * 359.97438 * 5 4 2 40 40 H 1.08002 * 119.99568 * 179.97438 * 6 5 4 41 41 H 1.09000 * 109.46913 * 182.12912 * 9 8 7 42 42 H 1.09002 * 109.46850 * 302.12535 * 9 8 7 43 43 H 1.08997 * 109.47457 * 62.12357 * 9 8 7 44 44 H 0.96998 * 126.68952 * 298.26595 * 10 8 7 45 45 H 1.08997 * 109.46739 * 30.02384 * 14 13 11 46 46 H 1.09002 * 109.46843 * 150.02170 * 14 13 11 47 47 H 1.08998 * 109.46937 * 294.99846 * 19 15 14 48 48 H 1.08996 * 109.46992 * 54.99753 * 19 15 14 49 49 H 0.96990 * 119.99706 * 180.02562 * 23 22 20 50 50 H 1.07992 * 120.00422 * 179.72494 * 30 7 6 51 51 H 1.07994 * 119.99796 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2322 7 6 2.9536 -2.0140 3.4877 8 6 3.4550 -2.7251 4.7182 9 6 2.4473 -3.7815 5.1756 10 7 4.7695 -3.3390 4.4624 11 6 5.6360 -2.7619 5.3144 12 8 6.8178 -3.0406 5.3679 13 7 5.0516 -1.8462 6.0954 14 6 5.7557 -1.0635 7.1143 15 6 5.7151 -1.8101 8.4491 16 1 4.6803 -2.0322 8.7098 17 6 6.4721 -3.0671 8.3316 18 7 7.0574 -4.0364 8.2405 19 6 6.3400 -0.9384 9.5402 20 6 6.1900 -1.6206 10.8756 21 1 5.6977 -2.5797 10.9397 22 6 6.6803 -1.0197 12.0156 23 7 6.5488 -1.6149 13.1810 24 14 7.5311 0.6394 11.9048 25 1 6.5275 1.7222 12.0652 26 1 8.5502 0.7460 12.9798 27 1 8.1922 0.7694 10.5814 28 6 3.7355 -1.7326 5.8291 29 8 2.9407 -0.9920 6.3672 30 6 2.1548 -0.8929 3.6147 31 6 1.6981 -0.2384 2.4860 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6765 1.9563 0.8900 37 1 3.1299 1.4426 -0.0005 38 1 1.6765 1.9564 -0.8899 39 1 3.0878 -2.2034 0.1226 40 1 3.9082 -3.3645 2.1330 41 1 2.8091 -4.2582 6.0867 42 1 1.4862 -3.3061 5.3713 43 1 2.3288 -4.5328 4.3948 44 1 4.9702 -4.0281 3.8099 45 1 6.7924 -0.9197 6.8098 46 1 5.2718 -0.0932 7.2257 47 1 7.3982 -0.7900 9.3250 48 1 5.8357 0.0274 9.5669 49 1 6.8934 -1.1920 13.9830 50 1 1.8902 -0.5266 4.5955 51 1 1.0766 0.6392 2.5851 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007206921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = -2.340336 kcal Electronic energy + Delta-G solvation = -33563.634819 eV Core-core repulsion = 29235.545752 eV Total energy + Delta-G solvation = -4328.089067 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80305 -39.99715 -38.68501 -37.40937 -36.54765 -35.68633 -34.75857 -33.57029 -31.99647 -31.57840 -30.99093 -29.25011 -28.06927 -27.56589 -25.40239 -24.38931 -23.70565 -23.04866 -21.85813 -21.56234 -20.38876 -20.29461 -18.33263 -17.49995 -17.06222 -16.92460 -16.46263 -16.36562 -15.74461 -15.55515 -15.32367 -15.26796 -14.50625 -14.36285 -14.25351 -14.20385 -14.08968 -13.86707 -13.64468 -13.45030 -13.33180 -13.06981 -12.83852 -12.79127 -12.53974 -12.47155 -12.36475 -12.15100 -12.04664 -11.80438 -11.56800 -11.55692 -11.26899 -11.21019 -11.09218 -10.97119 -10.87964 -10.48717 -10.35721 -10.14942 -9.93448 -9.74469 -9.52121 -9.33416 -9.26066 -8.96375 -8.62261 -6.11295 -4.12525 0.84749 1.05969 1.50654 2.09608 2.87858 2.95778 3.26659 3.35517 3.36113 3.37965 3.61051 3.66015 3.69101 3.98346 4.24524 4.36833 4.38005 4.48570 4.58977 4.67292 4.72932 4.75694 4.97284 4.98504 5.07905 5.15163 5.20299 5.20667 5.22105 5.23209 5.25635 5.40277 5.40674 5.43173 5.50659 5.53517 5.60233 5.65592 5.68725 5.74630 5.78347 5.80506 6.05602 6.11718 6.15139 6.17388 6.27628 6.58664 6.62475 6.85467 6.95771 7.06760 7.24506 7.59845 8.05485 8.37789 8.44669 8.91156 9.47697 11.01673 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002256 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.310055 B =12405.722567 C =13223.561906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.146 4.146 4 C -0.070 4.070 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.096 4.096 8 C 0.165 3.835 9 C -0.143 4.143 10 N -0.722 5.722 11 C 0.700 3.300 12 O -0.524 6.524 13 N -0.574 5.574 14 C 0.120 3.880 15 C 0.004 3.996 16 H 0.110 0.890 17 C 0.227 3.773 18 N -0.442 5.442 19 C -0.002 4.002 20 C -0.528 4.528 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.263 1.263 28 C 0.535 3.465 29 O -0.455 6.455 30 C -0.103 4.103 31 C -0.110 4.110 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.437 0.563 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.029 0.971 48 H 0.038 0.962 49 H 0.265 0.735 50 H 0.142 0.858 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.230 3.543 -29.584 33.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.203 4.203 4 C -0.070 4.070 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.098 4.098 8 C 0.074 3.926 9 C -0.201 4.201 10 N -0.387 5.387 11 C 0.401 3.599 12 O -0.395 6.395 13 N -0.319 5.319 14 C -0.001 4.001 15 C -0.018 4.018 16 H 0.128 0.872 17 C -0.091 4.091 18 N -0.118 5.118 19 C -0.041 4.041 20 C -0.566 4.566 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.187 1.187 28 C 0.321 3.679 29 O -0.323 6.323 30 C -0.121 4.121 31 C -0.128 4.128 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.281 0.719 45 H 0.122 0.878 46 H 0.133 0.867 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.160 0.840 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.025 2.417 -29.100 31.974 hybrid contribution 0.397 0.775 -0.014 0.871 sum -12.628 3.191 -29.115 31.896 Atomic orbital electron populations 1.21864 0.94125 1.02104 1.02109 1.20159 0.96113 0.96172 0.95231 1.21872 1.01353 0.94961 1.02111 1.19968 0.96864 0.95298 0.94833 1.20995 0.98452 0.95775 0.98382 1.20784 0.99235 0.99798 0.91380 1.19369 1.00613 0.97176 0.92609 1.20138 0.86142 0.93415 0.92883 1.22012 0.98108 0.97230 1.02776 1.45629 1.07792 1.43937 1.41350 1.15902 0.85347 0.79309 0.79362 1.91078 1.12734 1.65119 1.70563 1.46491 1.10945 1.38368 1.36120 1.22052 0.99052 0.94336 0.84671 1.19324 0.99652 0.87456 0.95406 0.87214 1.28721 0.93755 0.94278 0.92329 1.81010 1.09314 1.12269 1.09225 1.19625 0.96552 0.94923 0.93019 1.20947 1.39276 1.07036 0.89297 0.90795 1.24980 0.95246 0.97631 0.95209 1.69900 1.46057 1.38861 0.98506 0.86820 0.79951 0.84456 0.78388 1.19913 1.21259 1.18740 1.20535 0.81972 0.82655 0.82703 1.90773 1.50388 1.38263 1.52918 1.21377 0.96219 0.94162 1.00331 1.20968 1.00312 1.00045 0.91491 0.92271 0.92321 0.92476 0.90447 0.92259 0.92460 0.92301 0.85835 0.86084 0.90693 0.89491 0.90187 0.71865 0.87796 0.86660 0.95228 0.94411 0.92511 0.84015 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.01 37.15 0.33 -0.37 16 2 C -0.06 -0.32 3.09 -91.77 -0.28 -0.61 16 3 C -0.15 -0.78 9.01 37.16 0.33 -0.45 16 4 C -0.07 -0.50 4.78 -104.63 -0.50 -1.00 16 5 C -0.12 -0.84 9.67 -39.58 -0.38 -1.22 16 6 C -0.09 -0.71 9.35 -39.58 -0.37 -1.08 16 7 C -0.10 -0.86 4.87 -104.63 -0.51 -1.37 16 8 C 0.17 1.62 1.16 -133.24 -0.15 1.46 16 9 C -0.14 -1.16 8.97 37.16 0.33 -0.83 16 10 N -0.72 -7.47 5.29 -54.02 -0.29 -7.75 16 11 C 0.70 10.18 7.98 -88.01 -0.70 9.48 16 12 O -0.52 -9.59 16.53 5.34 0.09 -9.50 16 13 N -0.57 -8.04 2.49 -120.73 -0.30 -8.34 16 14 C 0.12 1.77 5.14 -4.04 -0.02 1.75 16 15 C 0.00 0.08 2.42 -93.41 -0.23 -0.15 16 16 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 17 C 0.23 4.88 12.20 -20.76 -0.25 4.63 16 18 N -0.44 -10.42 18.50 42.15 0.78 -9.64 16 19 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 20 C -0.53 -14.31 9.15 -34.44 -0.32 -14.62 16 21 H 0.07 2.21 7.84 -52.49 -0.41 1.79 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 24 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 28 C 0.54 6.77 6.53 -10.56 -0.07 6.70 16 29 O -0.45 -6.31 15.68 5.59 0.09 -6.23 16 30 C -0.10 -0.95 9.18 -39.58 -0.36 -1.31 16 31 C -0.11 -0.87 8.71 -39.58 -0.34 -1.22 16 32 H 0.06 0.29 7.39 -51.93 -0.38 -0.09 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.38 7.88 -51.93 -0.41 -0.03 16 36 H 0.06 0.32 7.39 -51.93 -0.38 -0.06 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.12 0.65 7.95 -52.49 -0.42 0.23 16 40 H 0.12 0.71 6.95 -52.49 -0.36 0.34 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.44 3.40 8.11 -40.82 -0.33 3.07 16 45 H 0.10 1.51 7.86 -51.93 -0.41 1.10 16 46 H 0.12 1.43 8.00 -51.93 -0.42 1.01 16 47 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 48 H 0.04 0.74 7.57 -51.93 -0.39 0.35 16 49 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 50 H 0.14 1.42 5.80 -52.49 -0.30 1.12 16 51 H 0.13 0.83 7.10 -52.49 -0.37 0.45 16 LS Contribution 421.32 15.07 6.35 6.35 Total: -1.00 -34.93 421.32 -8.38 -43.31 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.52 Total: 0.55 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -3.69 Total: 1.58 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.97 Total: -52.05 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.18 Total: -15.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.93 -8.38 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007206921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.969 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds