Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34229 * 125.13984 * 124.71644 * 10 9 7 12 12 C 1.38347 * 107.82140 * 179.89951 * 11 10 9 13 13 C 1.46645 * 126.85203 * 180.13631 * 12 11 10 14 14 C 1.35439 * 119.99900 * 0.26420 * 13 12 11 15 15 C 1.51060 * 126.50043 * 359.97438 * 14 13 12 16 16 C 1.50902 * 106.17472 * 180.02562 * 15 14 13 17 17 C 1.37894 * 131.93530 * 180.02562 * 16 15 14 18 18 C 1.38368 * 120.11623 * 179.97438 * 17 16 15 19 19 C 1.38394 * 120.14535 * 0.02562 * 18 17 16 20 20 C 1.37836 * 120.25117 * 359.97438 * 19 18 17 21 21 C 1.39440 * 107.87836 * 0.02562 * 16 15 14 22 22 C 1.41427 * 126.49548 * 179.69064 * 14 13 12 23 23 O 1.21779 * 125.29162 * 359.97438 * 22 14 13 24 24 C 1.46776 * 106.29772 * 0.35367 * 12 11 10 25 25 C 1.48248 * 126.51052 * 179.80643 * 24 12 11 26 26 C 1.39409 * 120.12567 * 324.72331 * 25 24 12 27 27 C 1.38000 * 119.86671 * 179.72372 * 26 25 24 28 28 C 1.38331 * 120.13054 * 0.55375 * 27 26 25 29 29 C 1.38334 * 120.25606 * 359.71845 * 28 27 26 30 30 C 1.38006 * 120.12855 * 0.02562 * 29 28 27 31 31 N 1.31356 * 106.98235 * 359.78167 * 24 12 11 32 32 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 34 34 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 35 35 H 1.08007 * 126.08810 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.99805 * 180.25554 * 13 12 11 37 37 H 1.08997 * 110.11307 * 299.18711 * 15 14 13 38 38 H 1.09001 * 110.10882 * 60.83091 * 15 14 13 39 39 H 1.08008 * 119.94360 * 0.02562 * 17 16 15 40 40 H 1.07996 * 119.93260 * 180.02562 * 18 17 16 41 41 H 1.07999 * 119.87324 * 179.97438 * 19 18 17 42 42 H 1.08005 * 120.01488 * 180.02562 * 20 19 18 43 43 H 1.08005 * 120.06377 * 359.97438 * 26 25 24 44 44 H 1.08007 * 119.93109 * 180.27562 * 27 26 25 45 45 H 1.08003 * 119.87231 * 179.75020 * 28 27 26 46 46 H 1.08003 * 119.93082 * 180.02562 * 29 28 27 47 47 H 1.07999 * 120.05891 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 4.8471 -3.0944 -0.9038 12 6 5.0679 -4.4175 -0.5654 13 6 5.9282 -5.3737 -1.2696 14 6 6.6115 -4.9851 -2.3726 15 6 6.5955 -3.6121 -3.0021 16 6 7.5115 -3.6876 -4.1989 17 6 7.8793 -2.7479 -5.1387 18 6 8.7548 -3.0880 -6.1548 19 6 9.2643 -4.3724 -6.2324 20 6 8.9037 -5.3201 -5.2987 21 6 8.0192 -4.9845 -4.2682 22 6 7.4796 -5.7865 -3.1500 23 8 7.7395 -6.9564 -2.9339 24 6 4.2651 -4.6748 0.6362 25 6 4.1682 -5.9567 1.3744 26 6 4.2070 -7.1668 0.6833 27 6 4.1222 -8.3571 1.3764 28 6 3.9873 -8.3509 2.7531 29 6 3.9425 -7.1531 3.4437 30 6 4.0318 -5.9566 2.7617 31 7 3.6492 -3.5533 0.9335 32 1 -0.4850 0.8401 0.0004 33 1 3.8752 -0.6797 -0.8895 34 1 3.8746 -0.6808 0.8905 35 1 5.2810 -2.5715 -1.7434 36 1 6.0170 -6.3878 -0.9087 37 1 5.5845 -3.3571 -3.3197 38 1 6.9646 -2.8706 -2.2935 39 1 7.4841 -1.7444 -5.0810 40 1 9.0412 -2.3496 -6.8890 41 1 9.9469 -4.6332 -7.0276 42 1 9.3039 -6.3212 -5.3627 43 1 4.3074 -7.1728 -0.3921 44 1 4.1566 -9.2953 0.8424 45 1 3.9172 -9.2849 3.2909 46 1 3.8375 -7.1544 4.5186 47 1 3.9963 -5.0221 3.3020 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007742111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = 113.165924 kcal Electronic energy + Delta-G solvation = -31195.903442 eV Core-core repulsion = 27082.413360 eV Total energy + Delta-G solvation = -4113.490082 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.02658 -40.45674 -38.79139 -38.10158 -35.70259 -34.10817 -32.63236 -32.23077 -31.19730 -30.86812 -30.52758 -29.05513 -27.71297 -26.75101 -25.17291 -23.71998 -22.72438 -22.21152 -21.75046 -21.20924 -20.21324 -19.44475 -18.58468 -17.25491 -16.82083 -16.68393 -16.35983 -15.71081 -15.50487 -15.27586 -15.07673 -14.87170 -14.76782 -14.46903 -14.06386 -14.04419 -13.70336 -13.35780 -13.32928 -13.29042 -13.27638 -12.86198 -12.68370 -12.49405 -12.44063 -12.23801 -11.87999 -11.83900 -11.25067 -11.20321 -11.12800 -11.00467 -10.95092 -10.48804 -10.25053 -9.98602 -9.87423 -9.63014 -9.36070 -9.14553 -8.91934 -8.90248 -8.88634 -8.39524 -7.52501 -6.37505 -4.42413 0.30080 1.05047 1.15907 1.33176 1.46541 2.44133 2.81603 2.95470 3.05172 3.08797 3.16924 3.30096 3.81578 3.95945 3.99817 4.09066 4.31027 4.53786 4.66709 4.74409 4.78332 4.84608 4.92010 5.00447 5.02080 5.07875 5.15470 5.18153 5.27410 5.39560 5.42385 5.50136 5.51896 5.53485 5.65546 5.70202 5.79091 5.86671 5.93488 6.07487 6.08166 6.17378 6.20094 6.23252 6.29551 6.40712 6.47226 6.51841 6.53923 6.65748 6.68934 6.82588 7.01057 7.10360 7.33498 7.69587 8.06406 8.17620 8.70324 9.15250 10.74731 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.005412 B = 0.003573 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5172.877011 B = 7833.591194 C =12628.143756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.087 0.913 9 C 0.223 3.777 10 N -0.311 5.311 11 C 0.089 3.911 12 C -0.258 4.258 13 C 0.099 3.901 14 C -0.278 4.278 15 C -0.048 4.048 16 C -0.049 4.049 17 C -0.119 4.119 18 C -0.089 4.089 19 C -0.139 4.139 20 C -0.056 4.056 21 C -0.176 4.176 22 C 0.440 3.560 23 O -0.469 6.469 24 C 0.115 3.885 25 C -0.002 4.002 26 C -0.100 4.100 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.122 4.122 30 C -0.090 4.090 31 N -0.249 5.249 32 H 0.270 0.730 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.188 0.812 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -9.237 -5.586 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.105 0.895 9 C 0.105 3.895 10 N -0.085 5.085 11 C -0.063 4.063 12 C -0.270 4.270 13 C 0.079 3.921 14 C -0.280 4.280 15 C -0.084 4.084 16 C -0.049 4.049 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.157 4.157 20 C -0.074 4.074 21 C -0.177 4.177 22 C 0.324 3.676 23 O -0.350 6.350 24 C -0.053 4.053 25 C -0.004 4.004 26 C -0.120 4.120 27 C -0.139 4.139 28 C -0.137 4.137 29 C -0.140 4.140 30 C -0.109 4.109 31 N -0.068 5.068 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.204 0.796 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.938 -8.844 -4.653 17.973 hybrid contribution 0.773 0.846 -0.741 1.365 sum 15.711 -7.998 -5.394 18.436 Atomic orbital electron populations 1.69861 1.06166 1.27537 1.48193 1.24816 0.94874 0.98787 0.94011 0.86914 0.80185 0.83838 0.79156 1.19555 1.18968 1.20379 1.21015 0.87278 0.95934 1.53763 0.89474 1.20263 0.98056 0.72417 0.98759 1.48882 1.30453 1.11368 1.17818 1.23739 0.93164 0.94194 0.95188 1.20042 1.10986 0.94078 1.01913 1.21283 0.85670 0.96981 0.88195 1.20606 1.07849 0.97901 1.01655 1.19871 0.99062 0.95894 0.93540 1.20558 0.95505 0.93521 0.95328 1.20532 0.99122 0.99373 0.94628 1.21294 0.95644 0.96458 0.97305 1.21063 1.01487 0.93554 0.99636 1.21031 0.94462 0.99593 0.92302 1.21157 1.01235 0.96568 0.98766 1.19022 0.79107 0.86485 0.82952 1.90621 1.56780 1.16858 1.70728 1.21952 0.96163 0.92836 0.94301 1.17760 1.01055 0.89166 0.92424 1.21243 0.99310 0.91294 1.00121 1.21045 1.00680 0.97748 0.94397 1.21205 1.00014 0.97983 0.94454 1.21081 1.00691 0.92220 0.99966 1.21291 0.97821 0.98700 0.93137 1.77478 1.19898 0.96214 1.13241 0.91941 0.92642 0.93789 0.79592 0.84537 0.88383 0.88648 0.85329 0.85390 0.85493 0.85556 0.85519 0.85740 0.86119 0.85843 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.43 0.77 -24.57 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.26 -5.23 6.54 56.52 0.37 -4.86 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.33 9.76 -34.44 -0.34 -14.67 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.22 4.79 5.28 -5.19 -0.03 4.76 16 10 N -0.31 -6.22 3.62 -61.90 -0.22 -6.44 16 11 C 0.09 1.44 10.03 -16.46 -0.17 1.28 16 12 C -0.26 -4.12 6.23 -103.02 -0.64 -4.76 16 13 C 0.10 1.38 9.12 -37.19 -0.34 1.04 16 14 C -0.28 -3.75 6.04 -104.23 -0.63 -4.38 16 15 C -0.05 -0.55 4.36 -28.76 -0.13 -0.67 16 16 C -0.05 -0.56 6.29 -104.20 -0.66 -1.21 16 17 C -0.12 -1.13 10.03 -39.66 -0.40 -1.53 16 18 C -0.09 -0.75 10.05 -39.48 -0.40 -1.15 16 19 C -0.14 -1.23 10.02 -39.67 -0.40 -1.63 16 20 C -0.06 -0.61 10.10 -39.11 -0.40 -1.01 16 21 C -0.18 -2.26 6.19 -104.92 -0.65 -2.91 16 22 C 0.44 6.43 7.31 -34.46 -0.25 6.18 16 23 O -0.47 -7.92 17.93 5.12 0.09 -7.83 16 24 C 0.11 2.05 6.94 -80.51 -0.56 1.49 16 25 C 0.00 -0.03 5.84 -104.91 -0.61 -0.64 16 26 C -0.10 -1.34 8.68 -39.23 -0.34 -1.68 16 27 C -0.12 -1.37 10.03 -39.63 -0.40 -1.76 16 28 C -0.12 -1.27 10.04 -39.51 -0.40 -1.67 16 29 C -0.12 -1.43 10.03 -39.63 -0.40 -1.83 16 30 C -0.09 -1.29 9.76 -39.23 -0.38 -1.68 16 31 N -0.25 -5.21 12.26 34.60 0.42 -4.79 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.07 7.10 -51.93 -0.37 0.70 16 34 H 0.04 0.93 7.57 -51.93 -0.39 0.53 16 35 H 0.19 2.35 4.46 -52.48 -0.23 2.12 16 36 H 0.14 1.80 6.22 -52.49 -0.33 1.48 16 37 H 0.10 1.06 7.04 -51.93 -0.37 0.70 16 38 H 0.10 0.97 7.07 -51.93 -0.37 0.61 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.58 6.41 -52.48 -0.34 1.25 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 46 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 47 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -32.19 400.31 -11.53 -43.72 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.36 Total: 6.01 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -8.59 Total: -26.40 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.97 Total: -35.80 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.19 -11.53 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007742111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.885 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds