Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38305 * 119.91875 * 2 1 4 4 C 1.38079 * 120.07864 * 180.02562 * 3 2 1 5 5 C 1.38970 * 119.92144 * 359.96947 * 4 3 2 6 6 S 1.76202 * 120.08062 * 180.02562 * 5 4 3 7 7 C 1.81405 * 103.00184 * 180.02562 * 6 5 4 8 8 C 1.50691 * 109.47250 * 179.97438 * 7 6 5 9 9 O 1.21309 * 120.00255 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.40100 * 120.00442 * 180.02562 * 10 8 7 12 12 C 1.29826 * 120.00408 * 180.02562 * 11 10 8 13 13 C 1.47361 * 120.00219 * 179.97438 * 12 11 10 14 14 C 1.39811 * 120.08672 * 179.97438 * 13 12 11 15 15 C 1.37715 * 119.90774 * 179.97438 * 14 13 12 16 16 C 1.39084 * 120.09126 * 359.97438 * 15 14 13 17 17 O 1.35651 * 119.91298 * 180.02562 * 16 15 14 18 18 C 1.34804 * 117.00043 * 354.45068 * 17 16 15 19 19 H 1.08000 * 120.00221 * 5.05736 * 18 17 16 20 20 C 1.38642 * 120.00056 * 185.05629 * 18 17 16 21 21 N 1.31563 * 120.00204 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99907 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46759 * 90.00033 * 22 20 18 24 24 H 1.48503 * 109.47026 * 209.99816 * 22 20 18 25 25 H 1.48496 * 109.47149 * 330.00354 * 22 20 18 26 26 C 1.39078 * 120.17134 * 0.02562 * 16 15 14 27 27 C 1.37717 * 120.09105 * 0.02562 * 26 16 15 28 28 C 1.38980 * 119.84051 * 0.27930 * 5 4 3 29 29 C 1.38079 * 119.91424 * 359.44891 * 28 5 4 30 30 H 1.08994 * 109.47363 * 90.00406 * 1 2 3 31 31 H 1.08999 * 109.47002 * 210.00636 * 1 2 3 32 32 H 1.09002 * 109.47086 * 330.00008 * 1 2 3 33 33 H 1.08002 * 119.95949 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.04349 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.46970 * 59.99591 * 7 6 5 36 36 H 1.08998 * 109.47055 * 300.00216 * 7 6 5 37 37 H 0.97004 * 120.00154 * 0.02562 * 10 8 7 38 38 H 1.08001 * 120.00102 * 359.97438 * 12 11 10 39 39 H 1.07993 * 120.04310 * 0.25918 * 14 13 12 40 40 H 1.08001 * 119.95190 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00369 * 180.02562 * 21 20 18 42 42 H 1.08005 * 119.95383 * 179.97438 * 26 16 15 43 43 H 1.07997 * 120.04178 * 179.97438 * 27 26 16 44 44 H 1.08003 * 120.03848 * 179.71993 * 28 5 4 45 45 H 1.08004 * 119.95677 * 180.27552 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5776 1.2026 -0.0005 5 6 4.2742 0.0001 -0.0004 6 16 6.0362 0.0001 -0.0004 7 6 6.4443 -1.7675 -0.0011 8 6 7.9416 -1.9373 -0.0018 9 8 8.6627 -0.9618 -0.0014 10 7 8.4797 -3.1729 -0.0028 11 7 9.8718 -3.3309 -0.0029 12 6 10.3901 -4.5212 -0.0045 13 6 11.8543 -4.6873 -0.0052 14 6 12.4144 -5.9684 -0.0063 15 6 13.7832 -6.1193 -0.0075 16 6 14.6083 -4.9996 -0.0081 17 8 15.9561 -5.1525 -0.0097 18 6 16.4296 -6.4094 0.1054 19 1 15.7461 -7.2455 0.1113 20 6 17.7941 -6.6287 0.2162 21 7 18.2563 -7.8553 0.3281 22 14 18.9764 -5.1825 0.2053 23 1 19.1911 -4.7082 1.5961 24 1 20.2739 -5.6083 -0.3784 25 1 18.4042 -4.0814 -0.6104 26 6 14.0549 -3.7236 -0.0069 27 6 12.6870 -3.5642 -0.0047 28 6 3.5776 -1.2026 -0.0057 29 6 2.1969 -1.1987 0.0006 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6548 2.1329 -0.0004 34 1 4.1157 2.1390 -0.0010 35 1 6.0253 -2.2368 -0.8912 36 1 6.0254 -2.2374 0.8887 37 1 7.9031 -3.9530 -0.0035 38 1 9.7481 -5.3897 -0.0053 39 1 11.7744 -6.8382 -0.0109 40 1 14.2166 -7.1085 -0.0087 41 1 19.2109 -8.0088 0.4060 42 1 14.6989 -2.8566 -0.0070 43 1 12.2582 -2.5730 -0.0034 44 1 4.1157 -2.1390 -0.0102 45 1 1.6549 -2.1329 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008158758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = 33.008391 kcal Electronic energy + Delta-G solvation = -27075.962897 eV Core-core repulsion = 22958.607780 eV Total energy + Delta-G solvation = -4117.355117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.77992 -39.61957 -39.29353 -37.30953 -35.98884 -33.39635 -32.86644 -32.44972 -31.63418 -30.49740 -30.30529 -28.42659 -27.48194 -25.60718 -23.39346 -22.86587 -22.22215 -22.04641 -20.99613 -20.30677 -18.49873 -18.10588 -17.53656 -17.28537 -16.90426 -16.13372 -16.04346 -15.78728 -15.28192 -14.99257 -14.81278 -14.42504 -14.34055 -14.05623 -13.90193 -13.85501 -13.78935 -13.72217 -13.51387 -12.82144 -12.80443 -12.77744 -12.50562 -12.41505 -12.34135 -11.92132 -11.57191 -11.42503 -11.40197 -10.91536 -10.85691 -10.58139 -10.38995 -10.28776 -10.05712 -9.95209 -9.52975 -9.47052 -9.34416 -8.87107 -8.41651 -7.73633 -7.29788 -6.57302 -4.22055 0.71159 0.80937 0.89300 1.18924 1.92038 2.07642 2.24004 2.38551 2.90782 3.15796 3.18677 3.19714 3.33431 4.07260 4.12586 4.27289 4.36929 4.39659 4.44225 4.44853 4.58422 4.68238 4.75802 4.79082 4.87721 4.97196 4.98963 5.09833 5.15400 5.20137 5.45394 5.50389 5.53374 5.62478 5.77996 5.80065 5.83523 6.00749 6.10276 6.19358 6.43332 6.43418 6.66807 6.81413 6.95421 7.01649 7.11229 7.40587 7.45447 7.64665 7.87180 8.25667 8.76667 9.37003 10.49052 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.001151 C = 0.001119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.920518 B =24321.855865 C =25027.200916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.101 4.101 4 C -0.095 4.095 5 C -0.105 4.105 6 S -0.023 6.023 7 C -0.149 4.149 8 C 0.547 3.453 9 O -0.487 6.487 10 N -0.582 5.582 11 N -0.265 5.265 12 C 0.154 3.846 13 C -0.168 4.168 14 C -0.034 4.034 15 C -0.230 4.230 16 C 0.177 3.823 17 O -0.204 6.204 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.870 5.870 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.201 4.201 27 C -0.026 4.026 28 C -0.133 4.133 29 C -0.101 4.101 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.380 0.620 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.282 0.718 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.832 10.277 -0.645 35.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.218 4.218 6 S 0.221 5.779 7 C -0.302 4.302 8 C 0.331 3.669 9 O -0.358 6.358 10 N -0.324 5.324 11 N -0.070 5.070 12 C -0.054 4.054 13 C -0.172 4.172 14 C -0.055 4.055 15 C -0.249 4.249 16 C 0.122 3.878 17 O -0.107 6.107 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.181 1.181 26 C -0.220 4.220 27 C -0.046 4.046 28 C -0.157 4.157 29 C -0.120 4.120 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.217 0.783 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -31.971 12.880 -0.641 34.474 hybrid contribution -1.045 -2.260 0.022 2.490 sum -33.016 10.620 -0.620 34.688 Atomic orbital electron populations 1.20793 0.90977 1.02893 1.02422 1.19967 0.96249 0.93111 1.00356 1.20996 0.93500 0.97811 0.99746 1.20733 0.93964 0.96471 1.00668 1.22113 0.98231 0.96661 1.04822 1.86368 0.95966 1.03714 1.91889 1.23753 0.97238 1.01134 1.08046 1.19231 0.88011 0.82508 0.77165 1.90791 1.61606 1.37713 1.45641 1.46728 1.03604 1.07991 1.74086 1.75180 0.90783 1.23214 1.17865 1.24479 0.95634 0.92364 0.92916 1.17833 0.88372 0.93917 1.17064 1.20828 0.94462 0.95030 0.95177 1.21161 0.93043 0.99681 1.11014 1.19351 0.83501 0.93464 0.91488 1.83546 1.17019 1.32030 1.78080 1.20845 0.93365 0.80881 1.51573 0.87219 1.24512 0.96625 0.97557 0.95148 1.69638 1.15539 1.19499 1.45909 0.86178 0.79331 0.82035 0.79438 1.19647 1.20560 1.18143 1.20204 0.94678 0.94989 1.12148 1.20921 0.91908 0.98059 0.93706 1.21146 0.94952 0.96340 1.03293 1.20948 0.93569 0.97781 0.99730 0.91090 0.91505 0.91438 0.85467 0.85284 0.86253 0.86242 0.78255 0.87312 0.86587 0.84411 0.90734 0.86025 0.85464 0.86006 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.01 36.00 0.36 -0.08 16 2 C -0.09 -0.58 5.88 -104.57 -0.62 -1.20 16 3 C -0.10 -0.66 9.69 -39.61 -0.38 -1.04 16 4 C -0.09 -0.74 9.79 -39.37 -0.39 -1.13 16 5 C -0.11 -0.89 6.11 -39.04 -0.24 -1.13 16 6 S -0.02 -0.23 21.06 -107.50 -2.26 -2.49 16 7 C -0.15 -1.13 4.82 36.00 0.17 -0.96 16 8 C 0.55 6.57 7.97 -10.99 -0.09 6.48 16 9 O -0.49 -8.22 16.20 5.53 0.09 -8.13 16 10 N -0.58 -6.41 6.26 31.22 0.20 -6.22 16 11 N -0.26 -3.86 10.15 32.14 0.33 -3.53 16 12 C 0.15 2.00 10.74 -14.69 -0.16 1.84 16 13 C -0.17 -2.67 5.87 -105.01 -0.62 -3.28 16 14 C -0.03 -0.55 9.78 -39.18 -0.38 -0.93 16 15 C -0.23 -4.51 9.15 -39.46 -0.36 -4.87 16 16 C 0.18 3.86 6.65 -38.96 -0.26 3.60 16 17 O -0.20 -5.12 8.58 0.43 0.00 -5.12 16 18 C -0.39 -10.45 9.94 30.88 0.31 -10.14 16 19 H 0.11 2.95 5.42 -52.49 -0.28 2.67 16 20 C 0.07 1.78 5.49 -17.52 -0.10 1.69 16 21 N -0.87 -23.98 13.96 55.48 0.77 -23.20 16 22 Si 0.91 20.81 28.62 -169.99 -4.86 15.95 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.20 -3.88 9.97 -39.46 -0.39 -4.28 16 27 C -0.03 -0.45 9.57 -39.18 -0.37 -0.82 16 28 C -0.13 -0.93 9.36 -39.37 -0.37 -1.30 16 29 C -0.10 -0.63 9.69 -39.62 -0.38 -1.02 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.61 7.74 -51.92 -0.40 0.20 16 36 H 0.12 0.61 7.76 -51.93 -0.40 0.21 16 37 H 0.38 2.54 8.65 -182.59 -1.58 0.96 16 38 H 0.11 0.99 8.02 -52.49 -0.42 0.57 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.14 2.81 5.62 -52.49 -0.29 2.52 16 41 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 43 H 0.13 2.17 7.55 -52.49 -0.40 1.77 16 44 H 0.12 0.61 5.88 -52.48 -0.31 0.30 16 45 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -32.87 406.20 -10.48 -43.35 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.60 Total: 1.85 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -4.27 Total: -18.58 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 1.30 Total: -32.95 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.95 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.26 Total: -2.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.87 -10.48 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008158758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.360 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds