Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35719 * 117.00436 * 2 1 4 4 C 1.38991 * 119.91607 * 179.97438 * 3 2 1 5 5 C 1.37694 * 120.09448 * 180.02562 * 4 3 2 6 6 C 1.39756 * 119.90668 * 359.97438 * 5 4 3 7 7 C 1.47560 * 120.08805 * 180.02562 * 6 5 4 8 8 O 1.21619 * 120.00027 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99606 * 180.02562 * 7 6 5 10 10 N 1.40099 * 119.99827 * 180.02562 * 9 7 6 11 11 C 1.29860 * 120.00153 * 179.97438 * 10 9 7 12 12 C 1.47346 * 120.00073 * 180.02562 * 11 10 9 13 13 C 1.39838 * 120.06283 * 359.97438 * 12 11 10 14 14 C 1.37766 * 120.00962 * 179.97438 * 13 12 11 15 15 C 1.38967 * 120.14829 * 0.03120 * 14 13 12 16 16 O 1.35693 * 119.93328 * 179.97438 * 15 14 13 17 17 C 1.34787 * 117.00362 * 354.37423 * 16 15 14 18 18 H 1.08004 * 119.99804 * 5.06862 * 17 16 15 19 19 C 1.38623 * 120.00509 * 185.06415 * 17 16 15 20 20 N 1.31572 * 120.00044 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99529 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47037 * 90.00159 * 21 19 17 23 23 H 1.48504 * 109.46962 * 209.99868 * 21 19 17 24 24 H 1.48500 * 109.47194 * 329.99769 * 21 19 17 25 25 C 1.39538 * 120.12931 * 359.96878 * 15 14 13 26 26 O 1.35944 * 120.00634 * 179.97438 * 25 15 14 27 27 C 1.42900 * 117.00015 * 180.02562 * 26 25 15 28 28 C 1.38183 * 119.98453 * 0.26244 * 25 15 14 29 29 C 1.39754 * 119.82121 * 0.27827 * 6 5 4 30 30 C 1.37701 * 119.90643 * 359.46125 * 29 6 5 31 31 H 1.09003 * 109.46701 * 59.99834 * 1 2 3 32 32 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47074 * 299.99899 * 1 2 3 34 34 H 1.08006 * 119.95333 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.04428 * 179.97438 * 5 4 3 36 36 H 0.97005 * 120.00301 * 0.02562 * 9 7 6 37 37 H 1.07996 * 119.99683 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.99497 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.92686 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99824 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.46996 * 180.02562 * 27 26 25 42 42 H 1.08995 * 109.47178 * 60.00235 * 27 26 25 43 43 H 1.08998 * 109.47061 * 300.00444 * 27 26 25 44 44 H 1.08006 * 120.07322 * 179.74817 * 28 25 15 45 45 H 1.07999 * 120.04914 * 179.72558 * 29 6 5 46 46 H 1.07999 * 119.95218 * 180.23296 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4333 1.2798 0.0005 5 6 4.0624 2.5047 0.0011 6 6 3.3030 3.6780 0.0005 7 6 3.9730 4.9927 0.0005 8 8 5.1875 5.0563 0.0005 9 7 3.2389 6.1230 0.0005 10 7 3.8749 7.3713 0.0000 11 6 3.1677 8.4604 -0.0005 12 6 3.8366 9.7733 -0.0017 13 6 5.2330 9.8480 -0.0017 14 6 5.8573 11.0761 -0.0033 15 6 5.1023 12.2428 -0.0042 16 8 5.7218 13.4501 -0.0053 17 6 7.0645 13.4491 0.1124 18 1 7.6053 12.5142 0.1196 19 6 7.7515 14.6480 0.2241 20 7 9.0622 14.6469 0.3385 21 14 6.8161 16.2649 0.2123 22 1 6.4466 16.6332 1.6027 23 1 7.6734 17.3284 -0.3703 24 1 5.5848 16.1186 -0.6049 25 6 3.7086 12.1752 -0.0042 26 8 2.9725 13.3182 -0.0046 27 6 1.5508 13.1742 -0.0041 28 6 3.0768 10.9463 0.0022 29 6 1.9075 3.6027 0.0053 30 6 1.2863 2.3738 -0.0006 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0195 0.3726 0.0014 35 1 5.1411 2.5586 0.0019 36 1 2.2702 6.0722 0.0009 37 1 2.0892 8.4038 -0.0001 38 1 5.8221 8.9428 -0.0004 39 1 6.9358 11.1322 -0.0037 40 1 9.5428 15.4858 0.4170 41 1 1.0858 14.1601 -0.0049 42 1 1.2414 12.6270 0.8863 43 1 1.2408 12.6258 -0.8936 44 1 1.9981 10.8924 0.0063 45 1 1.3172 4.5070 0.0094 46 1 0.2079 2.3147 -0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008228921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = -26.410274 kcal Electronic energy + Delta-G solvation = -30697.169988 eV Core-core repulsion = 26134.485413 eV Total energy + Delta-G solvation = -4562.684574 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.84347 -39.84699 -39.60040 -37.81618 -37.58612 -36.96081 -35.66681 -32.81707 -32.40763 -31.49122 -30.71866 -29.75180 -29.03904 -27.90615 -26.76891 -25.50466 -24.08364 -23.29427 -22.59223 -21.72544 -20.74928 -20.40473 -18.92832 -18.19595 -18.05517 -17.53792 -17.24902 -16.54148 -16.33866 -16.02908 -15.48264 -15.37238 -15.36098 -15.15225 -14.69963 -14.51881 -14.30193 -14.08006 -13.93029 -13.86593 -13.75944 -13.31326 -13.21433 -13.10708 -12.60969 -12.44327 -12.36383 -12.22001 -11.71270 -11.67394 -11.51935 -11.40223 -11.17633 -10.90290 -10.86226 -10.63580 -10.29499 -10.20469 -10.01529 -9.60083 -9.51301 -9.18184 -8.84363 -8.71699 -8.04272 -7.05104 -6.51045 -4.12105 0.43384 0.81700 1.25107 2.06820 2.42265 2.49783 2.66407 2.92349 3.21334 3.25552 3.42618 3.52328 3.79350 4.11878 4.20277 4.27508 4.34948 4.41694 4.49070 4.57319 4.60228 4.70703 4.77665 4.85573 4.91650 5.01969 5.03636 5.11660 5.30547 5.39077 5.41003 5.44835 5.58340 5.67928 5.70332 5.75536 5.82962 5.91856 6.05298 6.13602 6.14774 6.41500 6.74506 6.76275 6.95688 7.01575 7.17464 7.37593 7.56896 7.57369 7.85497 8.01821 8.39176 8.82600 9.43539 10.54871 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.001481 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.792303 B =18903.176786 C =20290.678840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.153 3.847 4 C -0.158 4.158 5 C -0.015 4.015 6 C -0.167 4.167 7 C 0.577 3.423 8 O -0.503 6.503 9 N -0.584 5.584 10 N -0.256 5.256 11 C 0.145 3.855 12 C -0.133 4.133 13 C -0.043 4.043 14 C -0.210 4.210 15 C 0.158 3.842 16 O -0.192 6.192 17 C -0.387 4.387 18 H 0.111 0.889 19 C 0.066 3.934 20 N -0.867 5.867 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.254 1.254 25 C 0.051 3.949 26 O -0.308 6.308 27 C 0.030 3.970 28 C -0.134 4.134 29 C -0.045 4.045 30 C -0.217 4.217 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.377 0.623 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.282 0.718 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.055 -23.291 -0.630 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.107 3.893 4 C -0.177 4.177 5 C -0.034 4.034 6 C -0.172 4.172 7 C 0.365 3.635 8 O -0.377 6.377 9 N -0.325 5.325 10 N -0.061 5.061 11 C -0.063 4.063 12 C -0.138 4.138 13 C -0.063 4.063 14 C -0.230 4.230 15 C 0.102 3.898 16 O -0.094 6.094 17 C -0.462 4.462 18 H 0.129 0.871 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.178 1.178 25 C 0.006 3.994 26 O -0.222 6.222 27 C -0.066 4.066 28 C -0.155 4.155 29 C -0.064 4.064 30 C -0.235 4.235 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.215 0.785 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.035 -23.404 -0.628 30.815 hybrid contribution -2.220 0.765 0.037 2.349 sum -22.256 -22.639 -0.591 31.752 Atomic orbital electron populations 1.23145 0.77861 1.04380 1.01680 1.86064 1.21859 1.26819 1.87834 1.19332 0.92477 0.84244 0.93294 1.20444 0.91239 0.98827 1.07161 1.21120 1.01028 0.89679 0.91589 1.19754 0.93559 0.93116 1.10772 1.17848 0.86903 0.82215 0.76533 1.90818 1.13168 1.86769 1.46898 1.46812 1.08081 1.03519 1.74132 1.75146 1.24618 0.89781 1.16558 1.24362 0.96443 0.91291 0.94191 1.17520 0.92904 0.88581 1.14748 1.21036 0.93045 0.97360 0.94902 1.21035 1.01224 0.90601 1.10127 1.18609 0.88427 0.86362 0.96392 1.83604 1.23003 1.24921 1.77870 1.20902 0.77316 0.97094 1.50907 0.87130 1.24503 0.95093 0.99098 0.95178 1.69656 1.06090 1.28945 1.45600 0.86170 0.80359 0.80974 0.79512 1.19708 1.20701 1.17805 1.17927 0.88339 0.85308 1.07856 1.86188 1.17602 1.28465 1.89967 1.22915 0.80179 1.02984 1.00495 1.20652 0.98663 0.90326 1.05909 1.21083 0.93213 0.97545 0.94590 1.21160 1.00404 0.91938 1.10018 0.92297 0.87911 0.92291 0.84166 0.83480 0.78494 0.87558 0.85496 0.83798 0.90752 0.89037 0.93338 0.93362 0.85764 0.85450 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.20 10.48 -18.86 -0.20 -2.40 16 3 C 0.15 1.17 6.70 -39.02 -0.26 0.91 16 4 C -0.16 -1.28 9.97 -39.50 -0.39 -1.67 16 5 C -0.02 -0.15 9.58 -39.21 -0.38 -0.52 16 6 C -0.17 -1.71 5.87 -104.96 -0.62 -2.33 16 7 C 0.58 7.99 7.88 -12.46 -0.10 7.89 16 8 O -0.50 -9.16 16.68 5.26 0.09 -9.07 16 9 N -0.58 -7.30 6.21 30.47 0.19 -7.11 16 10 N -0.26 -3.99 10.15 32.14 0.33 -3.66 16 11 C 0.15 1.98 10.74 -14.68 -0.16 1.82 16 12 C -0.13 -2.20 5.87 -105.02 -0.62 -2.81 16 13 C -0.04 -0.81 9.57 -39.16 -0.37 -1.18 16 14 C -0.21 -4.50 9.14 -39.48 -0.36 -4.86 16 15 C 0.16 3.61 6.67 -38.83 -0.26 3.35 16 16 O -0.19 -5.03 8.36 -14.27 -0.12 -5.15 16 17 C -0.39 -10.71 9.94 30.87 0.31 -10.40 16 18 H 0.11 3.10 5.42 -52.48 -0.28 2.82 16 19 C 0.07 1.83 5.49 -17.52 -0.10 1.74 16 20 N -0.87 -24.55 13.96 55.48 0.77 -23.77 16 21 Si 0.90 21.49 28.62 -169.99 -4.86 16.62 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.05 0.99 6.70 -39.12 -0.26 0.73 16 26 O -0.31 -5.82 10.28 -34.18 -0.35 -6.18 16 27 C 0.03 0.37 9.81 101.05 0.99 1.36 16 28 C -0.13 -2.13 8.77 -39.03 -0.34 -2.47 16 29 C -0.05 -0.33 9.53 -39.21 -0.37 -0.71 16 30 C -0.22 -1.41 9.01 -39.49 -0.36 -1.76 16 31 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.15 1.40 7.64 -52.48 -0.40 1.00 16 36 H 0.38 3.13 6.67 -182.59 -1.22 1.91 16 37 H 0.11 1.00 8.02 -52.49 -0.42 0.58 16 38 H 0.13 2.37 7.54 -52.49 -0.40 1.98 16 39 H 0.14 3.21 5.62 -52.49 -0.29 2.91 16 40 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 43 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 44 H 0.12 1.49 6.28 -52.48 -0.33 1.16 16 45 H 0.13 0.60 6.39 -52.49 -0.34 0.27 16 46 H 0.14 0.53 6.28 -52.49 -0.33 0.20 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -35.16 400.26 -6.78 -41.95 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.00 Total: 2.59 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.66 Total: -9.86 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 1.29 Total: -34.55 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.58 Total: -22.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.86 Total: 16.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.16 -6.78 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008228921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.536 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds