Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21316 * 120.00832 * 2 1 4 4 C 1.46658 * 119.99902 * 179.97438 * 2 1 3 5 5 C 1.40064 * 120.23676 * 5.98339 * 4 2 1 6 6 C 1.37631 * 119.89244 * 180.27507 * 5 4 2 7 7 C 1.38696 * 120.39840 * 359.74872 * 6 5 4 8 8 C 1.37936 * 120.48907 * 359.97269 * 7 6 5 9 9 C 1.38959 * 120.09302 * 0.02562 * 8 7 6 10 10 N 1.38698 * 120.19867 * 180.02562 * 9 8 7 11 11 C 1.46500 * 120.00012 * 6.46643 * 10 9 8 12 12 C 1.50693 * 109.47195 * 180.02562 * 11 10 9 13 13 O 1.21300 * 120.00137 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00205 * 179.97438 * 12 11 10 15 15 C 1.39934 * 119.99920 * 175.51527 * 14 12 11 16 16 C 1.38679 * 120.11760 * 34.00104 * 15 14 12 17 17 C 1.38219 * 120.02083 * 180.24784 * 16 15 14 18 18 C 1.38391 * 120.25139 * 359.74820 * 17 16 15 19 19 C 1.38086 * 120.22626 * 359.97221 * 18 17 16 20 20 C 1.38989 * 119.98023 * 0.02689 * 19 18 17 21 21 S 1.76197 * 120.12600 * 179.97438 * 20 19 18 22 22 C 1.76203 * 100.00005 * 7.59104 * 21 20 19 23 23 H 1.07998 * 119.99713 * 355.00525 * 22 21 20 24 24 C 1.38685 * 119.99556 * 175.00390 * 22 21 20 25 25 N 1.31652 * 120.00480 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99548 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47207 * 60.00125 * 26 24 22 28 28 H 1.48498 * 109.47278 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47146 * 300.00184 * 26 24 22 30 30 H 1.08995 * 109.47340 * 270.00402 * 1 2 3 31 31 H 1.09002 * 109.46593 * 30.00058 * 1 2 3 32 32 H 1.09002 * 109.47282 * 149.99811 * 1 2 3 33 33 H 1.07993 * 120.05178 * 0.02562 * 5 4 2 34 34 H 1.08001 * 119.79460 * 179.76736 * 6 5 4 35 35 H 1.07994 * 119.75831 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.95225 * 180.02562 * 8 7 6 37 37 H 0.97000 * 120.00105 * 186.46216 * 10 9 8 38 38 H 1.08994 * 109.47139 * 59.99697 * 11 10 9 39 39 H 1.08998 * 109.46976 * 300.00035 * 11 10 9 40 40 H 0.96993 * 119.99533 * 355.51968 * 14 12 11 41 41 H 1.08004 * 119.99096 * 359.96936 * 16 15 14 42 42 H 1.07997 * 119.87667 * 179.76431 * 17 16 15 43 43 H 1.08001 * 119.88942 * 179.97438 * 18 17 16 44 44 H 1.08002 * 120.01238 * 180.02562 * 19 18 17 45 45 H 0.97000 * 119.99598 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1137 1.0505 0.0000 4 6 2.2402 -1.2701 0.0006 5 6 1.5506 -2.4827 -0.1250 6 6 2.2453 -3.6708 -0.1179 7 6 3.6266 -3.6754 0.0077 8 6 4.3224 -2.4904 0.1267 9 6 3.6415 -1.2791 0.1219 10 7 4.3391 -0.0862 0.2408 11 6 5.8040 -0.0900 0.2294 12 6 6.3112 1.3217 0.3732 13 8 5.5261 2.2408 0.4747 14 7 7.6371 1.5632 0.3890 15 6 8.1079 2.8804 0.4278 16 6 7.4010 3.8520 1.1202 17 6 7.8652 5.1534 1.1530 18 6 9.0380 5.4920 0.5010 19 6 9.7532 4.5316 -0.1867 20 6 9.2951 3.2200 -0.2259 21 16 10.2043 1.9916 -1.1028 22 6 11.6519 2.9118 -1.5058 23 1 11.7076 3.9633 -1.2656 24 6 12.7196 2.2857 -2.1313 25 7 12.6515 1.0041 -2.4245 26 14 14.2540 3.2615 -2.5592 27 1 14.8449 3.8242 -1.3185 28 1 15.2412 2.3683 -3.2172 29 1 13.8956 4.3678 -3.4827 30 1 -0.3634 0.0001 1.0276 31 1 -0.3632 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 0.4751 -2.4856 -0.2232 34 1 1.7116 -4.6051 -0.2111 35 1 4.1613 -4.6136 0.0117 36 1 5.3980 -2.5040 0.2236 37 1 3.8570 0.7506 0.3315 38 1 6.1589 -0.5099 -0.7117 39 1 6.1722 -0.6941 1.0585 40 1 8.2648 0.8240 0.3733 41 1 6.4849 3.5925 1.6302 42 1 7.3107 5.9090 1.6898 43 1 9.3951 6.5108 0.5301 44 1 10.6682 4.7996 -0.6940 45 1 13.3983 0.5664 -2.8624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009314830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = -7.781438 kcal Electronic energy + Delta-G solvation = -29277.978210 eV Core-core repulsion = 25158.854314 eV Total energy + Delta-G solvation = -4119.123897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67358 -40.04072 -38.32870 -37.87495 -35.59675 -34.46985 -32.79605 -32.20555 -30.61072 -30.35015 -29.62676 -28.94557 -26.53510 -25.90279 -24.04790 -22.65070 -22.20293 -21.47854 -20.55292 -19.84709 -18.46560 -17.87285 -17.29086 -16.78202 -16.29243 -16.14964 -15.96995 -15.69966 -15.21341 -15.13384 -14.80454 -14.59003 -14.43575 -14.23455 -14.02904 -13.83362 -13.50520 -13.27482 -12.97453 -12.95123 -12.69790 -12.45389 -12.34170 -12.22974 -12.15937 -11.72842 -11.45752 -11.38380 -11.23726 -11.12334 -10.44761 -10.43583 -10.15294 -9.92555 -9.74379 -9.61412 -9.50097 -9.22054 -8.82442 -8.70761 -7.78699 -7.67107 -6.59194 -6.56549 -4.28533 0.56724 1.38763 1.79097 2.04186 2.27027 2.67127 2.87220 3.03892 3.09264 3.13235 3.28722 3.57871 3.66406 3.93182 3.94559 4.39033 4.53170 4.60771 4.74896 4.83677 4.86505 4.99975 5.04007 5.05639 5.11412 5.14215 5.20142 5.24168 5.37923 5.59838 5.63090 5.63806 5.72165 5.84002 5.97224 6.10749 6.12416 6.17579 6.31704 6.51059 6.52675 6.78956 6.83941 7.03161 7.07538 7.17384 7.31176 7.40691 7.61202 7.64015 7.87613 8.08974 8.23448 8.91892 10.50383 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.002146 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.592483 B =13046.802738 C =14856.319716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.396 3.604 3 O -0.467 6.467 4 C -0.263 4.263 5 C -0.023 4.023 6 C -0.202 4.202 7 C -0.034 4.034 8 C -0.218 4.218 9 C 0.281 3.719 10 N -0.709 5.709 11 C 0.094 3.906 12 C 0.506 3.494 13 O -0.518 6.518 14 N -0.652 5.652 15 C 0.119 3.881 16 C -0.101 4.101 17 C -0.149 4.149 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.101 4.101 21 S 0.036 5.964 22 C -0.547 4.547 23 H 0.094 0.906 24 C 0.078 3.922 25 N -0.866 5.866 26 Si 0.924 3.076 27 H -0.270 1.270 28 H -0.280 1.280 29 H -0.270 1.270 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.428 0.572 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.413 0.587 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.976 -8.878 6.179 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.278 3.722 3 O -0.344 6.344 4 C -0.270 4.270 5 C -0.042 4.042 6 C -0.222 4.222 7 C -0.053 4.053 8 C -0.241 4.241 9 C 0.169 3.831 10 N -0.348 5.348 11 C -0.034 4.034 12 C 0.292 3.708 13 O -0.393 6.393 14 N -0.297 5.297 15 C 0.017 3.983 16 C -0.122 4.122 17 C -0.173 4.173 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.218 4.218 21 S 0.290 5.710 22 C -0.694 4.694 23 H 0.112 0.888 24 C -0.132 4.132 25 N -0.499 5.499 26 Si 0.750 3.250 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.195 1.195 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.279 0.721 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.250 0.750 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.156 0.844 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.047 -9.123 5.733 21.884 hybrid contribution 1.517 1.549 -0.037 2.169 sum -17.530 -7.574 5.696 19.928 Atomic orbital electron populations 1.22178 0.93871 1.04714 1.04583 1.22285 0.91764 0.87399 0.70799 1.90336 1.70761 1.34563 1.38742 1.19853 0.92120 0.95434 1.19546 1.21197 0.99384 0.90937 0.92654 1.20825 0.94356 0.97851 1.09150 1.21136 0.94257 0.97468 0.92423 1.20785 1.00359 0.90970 1.11966 1.18014 0.90003 0.86631 0.88417 1.45340 1.04461 1.09174 1.75862 1.21179 0.82951 0.94944 1.04314 1.20422 0.82507 0.90996 0.76888 1.90720 1.55217 1.45218 1.48156 1.43212 1.06796 1.07784 1.71908 1.17109 0.95900 0.83953 1.01356 1.20989 0.99926 0.92724 0.98586 1.20762 0.97535 0.95814 1.03153 1.20991 0.95359 0.98649 0.98272 1.21293 1.01305 0.91577 1.01444 1.22533 0.98502 1.00118 1.00685 1.83101 1.14891 1.13840 1.59131 1.23233 1.00885 0.98908 1.46390 0.88796 1.25085 0.98763 0.95228 0.94142 1.69981 1.32547 1.09389 1.37996 0.86105 0.80337 0.79505 0.79090 1.19465 1.20562 1.19474 0.88624 0.89545 0.89649 0.85268 0.85938 0.85677 0.85289 0.72078 0.88153 0.88603 0.75008 0.85152 0.86912 0.86987 0.84365 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 9.87 36.00 0.36 -0.99 16 2 C 0.40 4.49 7.20 -30.91 -0.22 4.27 16 3 O -0.47 -7.21 14.41 5.53 0.08 -7.13 16 4 C -0.26 -2.85 5.88 -104.90 -0.62 -3.46 16 5 C -0.02 -0.18 9.39 -39.12 -0.37 -0.55 16 6 C -0.20 -1.51 10.02 -39.63 -0.40 -1.91 16 7 C -0.03 -0.27 10.03 -39.52 -0.40 -0.67 16 8 C -0.22 -2.14 9.30 -39.42 -0.37 -2.50 16 9 C 0.28 3.36 6.65 -83.58 -0.56 2.81 16 10 N -0.71 -9.70 5.51 -59.58 -0.33 -10.03 16 11 C 0.09 1.14 5.44 -5.20 -0.03 1.11 16 12 C 0.51 8.08 7.75 -10.99 -0.09 7.99 16 13 O -0.52 -9.95 13.04 5.54 0.07 -9.88 16 14 N -0.65 -10.85 5.03 -9.70 -0.05 -10.90 16 15 C 0.12 2.33 6.33 -83.44 -0.53 1.81 16 16 C -0.10 -1.90 8.70 -39.43 -0.34 -2.25 16 17 C -0.15 -2.61 10.04 -39.53 -0.40 -3.01 16 18 C -0.11 -2.02 10.03 -39.58 -0.40 -2.41 16 19 C -0.13 -2.71 9.25 -39.36 -0.36 -3.08 16 20 C -0.10 -2.19 6.11 -38.75 -0.24 -2.43 16 21 S 0.04 0.86 20.52 -107.50 -2.21 -1.34 16 22 C -0.55 -14.30 9.07 30.90 0.28 -14.02 16 23 H 0.09 2.36 4.84 -52.49 -0.25 2.11 16 24 C 0.08 2.03 5.49 -17.46 -0.10 1.94 16 25 N -0.87 -23.50 13.22 55.48 0.73 -22.77 16 26 Si 0.92 20.00 29.55 -169.99 -5.02 14.98 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.38 6.27 -51.93 -0.33 0.05 16 33 H 0.13 0.63 6.25 -52.49 -0.33 0.31 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.08 6.71 -52.49 -0.35 0.72 16 37 H 0.43 6.92 4.04 -40.86 -0.16 6.75 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.89 7.69 -51.93 -0.40 0.49 16 40 H 0.41 6.15 7.94 -40.82 -0.32 5.83 16 41 H 0.13 2.44 6.14 -52.48 -0.32 2.12 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.14 2.96 4.96 -52.49 -0.26 2.70 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -32.73 388.96 -10.45 -43.17 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -4.83 Total: 15.40 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.76 Total: -17.35 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.36 Total: -43.69 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.15 Total: -17.01 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.21 Total: -1.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.73 -10.45 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009314830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.392 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds