Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34708 * 116.99799 * 2 1 4 4 O 1.21468 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.39377 * 120.07817 * 180.02562 * 5 3 2 7 7 C 1.39321 * 119.69665 * 179.97438 * 6 5 3 8 8 C 1.47802 * 120.06968 * 179.97438 * 7 6 5 9 9 O 1.21535 * 120.00518 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99968 * 179.97438 * 8 7 6 11 11 C 1.38196 * 119.99963 * 177.25559 * 10 8 7 12 12 C 1.40002 * 119.80085 * 218.81669 * 11 10 8 13 13 C 1.35926 * 120.20261 * 179.76304 * 12 11 10 14 14 C 1.41651 * 119.79369 * 0.52998 * 13 12 11 15 15 C 1.39658 * 120.19635 * 179.69886 * 14 13 12 16 16 H 1.08006 * 119.99823 * 158.39742 * 15 14 13 17 17 C 1.46576 * 120.00245 * 338.39980 * 15 14 13 18 18 N 1.29500 * 119.99647 * 332.59382 * 17 15 14 19 19 Si 1.86795 * 120.00489 * 152.59321 * 17 15 14 20 20 H 1.48500 * 109.46927 * 94.99260 * 19 17 15 21 21 H 1.48503 * 109.47307 * 214.99503 * 19 17 15 22 22 H 1.48500 * 109.47253 * 334.99791 * 19 17 15 23 23 C 1.41658 * 119.60903 * 359.72053 * 14 13 12 24 24 C 1.35921 * 119.79364 * 0.02562 * 23 14 13 25 25 C 1.39741 * 119.85638 * 359.97438 * 7 6 5 26 26 C 1.38057 * 120.15008 * 0.02562 * 25 7 6 27 27 N 1.48011 * 119.84873 * 180.02562 * 26 25 7 28 28 O 1.31700 * 120.00273 * 179.97438 * 27 26 25 29 29 O 1.31704 * 120.00048 * 359.97258 * 27 26 25 30 30 C 1.38098 * 120.30363 * 359.97438 * 26 25 7 31 31 H 1.09007 * 109.47338 * 299.99496 * 1 2 3 32 32 H 1.08994 * 109.47514 * 59.99956 * 1 2 3 33 33 H 1.09003 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08003 * 120.14962 * 359.71053 * 6 5 3 35 35 H 0.97003 * 119.99648 * 357.25760 * 10 8 7 36 36 H 1.08005 * 119.89704 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.10109 * 180.25601 * 13 12 11 38 38 H 0.97000 * 120.00056 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.10229 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.89697 * 179.97438 * 24 23 14 41 41 H 1.07996 * 119.92511 * 180.02562 * 25 7 6 42 42 H 1.08001 * 119.92286 * 180.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1733 2.5187 0.0011 7 6 5.5651 2.5823 0.0022 8 6 6.2464 3.8940 0.0022 9 8 5.5926 4.9185 0.0008 10 7 7.5929 3.9539 0.0038 11 6 8.2300 5.1789 -0.0535 12 6 9.3933 5.3230 -0.8191 13 6 10.0239 6.5253 -0.8851 14 6 9.5069 7.6316 -0.1672 15 6 10.1516 8.8691 -0.2240 16 1 9.6084 9.7723 0.0120 17 6 11.5654 8.9423 -0.6039 18 7 12.3493 7.9366 -0.3783 19 14 12.2363 10.4861 -1.4136 20 1 12.8348 11.3675 -0.3791 21 1 13.2751 10.1127 -2.4070 22 1 11.1325 11.2057 -2.0985 23 6 8.3323 7.4751 0.6090 24 6 7.7120 6.2667 0.6592 25 6 6.3154 1.4035 0.0033 26 6 5.6806 0.1775 0.0027 27 7 6.4819 -1.0670 0.0044 28 8 5.8795 -2.2381 0.0044 29 8 7.7974 -1.0031 0.0059 30 6 4.3015 0.1069 0.0017 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.5887 3.4268 -0.0036 35 1 8.1146 3.1372 0.0451 36 1 9.7890 4.4770 -1.3616 37 1 10.9189 6.6356 -1.4794 38 1 13.2848 7.9848 -0.6300 39 1 7.9314 8.3132 1.1598 40 1 6.8165 6.1455 1.2508 41 1 7.3943 1.4515 0.0045 42 1 3.8113 -0.8555 0.0017 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012980293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -34.207577 kcal Electronic energy + Delta-G solvation = -31217.930731 eV Core-core repulsion = 26519.074946 eV Total energy + Delta-G solvation = -4698.855785 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.109 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.52759 -40.52743 -39.63323 -38.40986 -37.16332 -36.99978 -34.85723 -34.69423 -33.48127 -32.59635 -32.42085 -29.66815 -29.22035 -28.34457 -27.16679 -25.59538 -25.02759 -23.60586 -21.84170 -21.61434 -20.90504 -20.11509 -19.19328 -18.65341 -17.88319 -17.65070 -17.30155 -17.11614 -16.98365 -16.84026 -16.47630 -16.39420 -15.51776 -15.27053 -14.99867 -14.56470 -14.16322 -14.07448 -14.00907 -13.41163 -13.11380 -13.00947 -12.84997 -12.77704 -12.60269 -12.19013 -12.05159 -11.72342 -11.60141 -11.57949 -11.37094 -11.29127 -11.24642 -11.08854 -11.03203 -10.61633 -10.35535 -10.32102 -10.07067 -9.89982 -9.72981 -9.41326 -8.86809 -7.65215 -7.33864 -7.09020 -4.35698 -1.15698 -0.38649 0.37121 0.58978 1.58810 1.92192 2.37636 2.61767 2.90320 2.92021 3.01363 3.10085 3.17011 3.41887 3.59641 3.69085 3.74934 4.00626 4.09861 4.18366 4.29559 4.38152 4.61032 4.70767 4.76731 4.82356 5.03368 5.10542 5.23947 5.30219 5.56909 5.61873 5.69634 6.12875 6.31599 6.32245 6.61840 6.67931 6.84367 7.02759 7.04960 7.20782 7.47198 7.52490 7.78717 7.92157 8.01284 8.13285 8.38420 8.52489 8.65982 8.92852 9.71243 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.001915 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.198277 B =14616.025062 C =16366.310229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.484 6.484 5 C -0.127 4.127 6 C 0.050 3.950 7 C -0.118 4.118 8 C 0.534 3.466 9 O -0.516 6.516 10 N -0.622 5.622 11 C -0.060 4.060 12 C -0.087 4.087 13 C -0.185 4.185 14 C 0.114 3.886 15 C -0.454 4.454 16 H 0.086 0.914 17 C 0.080 3.920 18 N -0.739 5.739 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.239 4.239 24 C -0.050 4.050 25 C 0.003 3.997 26 C -0.017 4.017 27 N -0.020 5.020 28 O -0.161 6.161 29 O -0.155 6.155 30 C 0.015 3.985 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.175 0.825 35 H 0.392 0.608 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.292 0.708 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.168 0.832 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 -15.464 -0.153 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.358 3.642 4 O -0.372 6.372 5 C -0.129 4.129 6 C 0.031 3.969 7 C -0.122 4.122 8 C 0.319 3.681 9 O -0.393 6.393 10 N -0.264 5.264 11 C -0.152 4.152 12 C -0.107 4.107 13 C -0.205 4.205 14 C 0.111 3.889 15 C -0.479 4.479 16 H 0.104 0.896 17 C -0.149 4.149 18 N -0.359 5.359 19 Si 0.733 3.267 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.259 4.259 24 C -0.070 4.070 25 C -0.017 4.017 26 C -0.103 4.103 27 N 0.462 4.538 28 O -0.356 6.356 29 O -0.351 6.351 30 C -0.005 4.005 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.185 0.815 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.725 -13.986 -0.159 20.309 hybrid contribution 0.828 -0.324 -0.313 0.942 sum -13.897 -14.311 -0.472 19.954 Atomic orbital electron populations 1.23400 0.74780 1.04342 1.03129 1.86520 1.24483 1.31768 1.84127 1.20595 0.87989 0.82120 0.73521 1.90928 1.66044 1.35789 1.44411 1.18887 0.90521 0.93033 1.10433 1.21938 0.93546 0.98315 0.83117 1.20212 0.93553 0.93826 1.04633 1.17693 0.83140 0.87087 0.80163 1.90829 1.64742 1.34083 1.49676 1.42511 1.04851 1.09087 1.69913 1.16888 1.00467 0.85386 1.12493 1.20142 0.95359 0.97231 0.97997 1.20696 1.02327 0.92786 1.04646 1.17597 0.90611 0.92627 0.88055 1.20683 0.93006 0.94574 1.39679 0.89601 1.27563 0.97188 0.97789 0.92318 1.69181 1.06482 1.32068 1.28132 0.86270 0.79312 0.81250 0.79868 1.19054 1.19604 1.17635 1.20552 1.01753 0.96452 1.07169 1.20197 0.97539 0.92731 0.96494 1.21605 1.02960 0.89027 0.88076 1.20002 0.90766 0.83071 1.16465 1.50335 1.03385 1.03638 0.96403 1.96296 1.73148 1.11310 1.54825 1.96330 0.88402 1.95799 1.54559 1.21487 0.90526 1.01109 0.87356 0.91353 0.91360 0.87428 0.80785 0.77294 0.89371 0.87256 0.89605 0.88832 0.88344 0.81511 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.66 9.81 -40.51 -0.40 -3.06 16 3 C 0.51 4.86 7.90 34.61 0.27 5.13 16 4 O -0.48 -5.83 16.13 -19.24 -0.31 -6.14 16 5 C -0.13 -1.13 5.87 -105.04 -0.62 -1.75 16 6 C 0.05 0.52 9.14 -38.75 -0.35 0.17 16 7 C -0.12 -1.34 5.87 -105.02 -0.62 -1.96 16 8 C 0.53 8.49 7.56 -12.35 -0.09 8.39 16 9 O -0.52 -10.19 14.04 5.33 0.07 -10.11 16 10 N -0.62 -10.22 5.20 -10.59 -0.06 -10.28 16 11 C -0.06 -1.28 6.22 -83.68 -0.52 -1.81 16 12 C -0.09 -1.92 9.90 -39.75 -0.39 -2.31 16 13 C -0.18 -4.55 8.76 -39.11 -0.34 -4.89 16 14 C 0.11 2.93 5.62 -106.76 -0.60 2.33 16 15 C -0.45 -11.40 9.23 -35.69 -0.33 -11.73 16 16 H 0.09 2.08 8.04 -52.48 -0.42 1.66 16 17 C 0.08 1.85 5.08 -15.17 -0.08 1.77 16 18 N -0.74 -17.29 11.50 55.99 0.64 -16.65 16 19 Si 0.91 16.92 29.70 -169.99 -5.05 11.87 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 22 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 23 C -0.24 -5.90 9.76 -39.11 -0.38 -6.28 16 24 C -0.05 -1.16 8.56 -39.75 -0.34 -1.50 16 25 C 0.00 0.03 9.07 -39.09 -0.35 -0.32 16 26 C -0.02 -0.17 6.87 -80.07 -0.55 -0.72 16 27 N -0.02 -0.23 4.98 33.90 0.17 -0.06 16 28 O -0.16 -1.96 19.13 -31.57 -0.60 -2.56 16 29 O -0.15 -2.00 19.13 -31.57 -0.60 -2.61 16 30 C 0.01 0.12 9.14 -39.08 -0.36 -0.24 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.17 1.97 7.23 -52.48 -0.38 1.59 16 35 H 0.39 5.02 6.85 -40.82 -0.28 4.74 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.11 2.72 6.33 -52.49 -0.33 2.38 16 38 H 0.29 6.02 8.27 -40.82 -0.34 5.69 16 39 H 0.09 2.20 8.06 -52.48 -0.42 1.77 16 40 H 0.10 2.22 6.56 -52.48 -0.34 1.88 16 41 H 0.17 1.41 5.89 -52.49 -0.31 1.10 16 42 H 0.17 1.15 7.10 -52.49 -0.37 0.77 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -30.46 382.84 -8.63 -39.09 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.69 Total: 9.20 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -4.59 Total: -14.46 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.76 Total: -26.99 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.84 Total: -24.48 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.05 Total: 11.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.46 -8.63 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012980293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds