Wall clock time and date at job start Tue Mar 31 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.92588 * 2 1 4 4 C 1.38110 * 120.07000 * 179.97438 * 3 2 1 5 5 C 1.38896 * 119.92528 * 359.97438 * 4 3 2 6 6 N 1.39858 * 120.06767 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99687 * 144.81888 * 6 5 4 8 8 O 1.21590 * 120.00038 * 4.81795 * 7 6 5 9 9 C 1.47591 * 119.99781 * 184.81561 * 7 6 5 10 10 C 1.41309 * 120.60566 * 4.28045 * 9 7 6 11 11 N 1.31096 * 120.02582 * 180.02562 * 10 9 7 12 12 C 1.34016 * 121.15972 * 359.97438 * 11 10 9 13 13 N 1.32709 * 132.00813 * 179.97438 * 12 11 10 14 14 C 1.33268 * 109.76797 * 180.02562 * 13 12 11 15 15 S 1.76196 * 125.29097 * 179.97438 * 14 13 12 16 16 C 1.76196 * 99.99885 * 0.03108 * 15 14 13 17 17 H 1.07996 * 120.00154 * 359.97438 * 16 15 14 18 18 C 1.38758 * 119.99818 * 179.97438 * 16 15 14 19 19 N 1.31598 * 120.00002 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00092 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47088 * 90.00073 * 20 18 16 22 22 H 1.48497 * 109.47103 * 210.00017 * 20 18 16 23 23 H 1.48507 * 109.47091 * 330.00007 * 20 18 16 24 24 N 1.31800 * 109.41838 * 0.02562 * 14 13 12 25 25 N 1.36824 * 120.65754 * 359.97438 * 12 11 10 26 26 C 1.34977 * 120.50223 * 0.02562 * 25 12 11 27 27 C 1.50700 * 120.56261 * 180.25560 * 26 25 12 28 28 C 1.38886 * 119.85644 * 0.25430 * 5 4 3 29 29 C 1.38100 * 119.92873 * 359.49393 * 28 5 4 30 30 H 1.08997 * 109.47331 * 90.00481 * 1 2 3 31 31 H 1.09003 * 109.47103 * 210.00272 * 1 2 3 32 32 H 1.09001 * 109.47369 * 329.99705 * 1 2 3 33 33 H 1.07997 * 119.96606 * 359.95281 * 3 2 1 34 34 H 1.07994 * 120.03519 * 180.02562 * 4 3 2 35 35 H 0.96998 * 119.99803 * 324.81508 * 6 5 4 36 36 H 1.08000 * 119.99177 * 0.02562 * 10 9 7 37 37 H 0.96999 * 119.99731 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46866 * 262.57576 * 27 26 25 39 39 H 1.08991 * 109.47260 * 22.58021 * 27 26 25 40 40 H 1.08999 * 109.46906 * 142.58188 * 27 26 25 41 41 H 1.07998 * 120.03137 * 179.74869 * 28 5 4 42 42 H 1.08004 * 119.97008 * 180.25571 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6725 -0.0001 0.0016 7 6 6.3463 -0.9534 0.6750 8 8 5.7416 -1.8631 1.2091 9 6 7.8183 -0.8934 0.7639 10 6 8.5274 0.2042 0.2259 11 7 9.8349 0.2456 0.3108 12 6 10.5230 -0.7400 0.9035 13 7 11.8222 -0.9184 1.1068 14 6 12.0242 -2.0687 1.7487 15 16 13.5963 -2.7070 2.2236 16 6 14.6428 -1.4273 1.6140 17 1 14.2142 -0.5715 1.1138 18 6 16.0178 -1.5191 1.7766 19 7 16.5401 -2.5617 2.3866 20 14 17.1275 -0.1628 1.1298 21 1 17.3210 0.8639 2.1851 22 1 18.4433 -0.7380 0.7516 23 1 16.5003 0.4639 -0.0616 24 7 10.8652 -2.6552 1.9720 25 7 9.8746 -1.8198 1.4380 26 6 8.5293 -1.9104 1.3768 27 6 7.8134 -3.0963 1.9702 28 6 3.5779 -1.2020 -0.0032 29 6 2.1969 -1.1985 0.0015 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6551 2.1327 -0.0008 34 1 4.1162 2.1382 0.0010 35 1 6.1574 0.6861 -0.4830 36 1 7.9920 1.0092 -0.2555 37 1 17.5012 -2.6260 2.5000 38 1 7.5979 -3.8208 1.1849 39 1 8.4443 -3.5594 2.7287 40 1 6.8799 -2.7663 2.4261 41 1 4.1162 -2.1383 -0.0065 42 1 1.6551 -2.1328 0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017070991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:53 Heat of formation + Delta-G solvation = 126.536727 kcal Electronic energy + Delta-G solvation = -28663.078532 eV Core-core repulsion = 24543.957427 eV Total energy + Delta-G solvation = -4119.121105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.100 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.56348 -40.96031 -39.23613 -37.97619 -35.79552 -34.83539 -32.80342 -32.39351 -31.35681 -31.16366 -30.46388 -28.77443 -26.71131 -25.92587 -24.53973 -24.05460 -23.34894 -22.15163 -21.23200 -20.92354 -18.90994 -18.71091 -18.02309 -17.16360 -17.08969 -16.55284 -15.89157 -15.66900 -15.41604 -15.04115 -15.02007 -14.80145 -14.66339 -14.10795 -14.04894 -13.74714 -13.47767 -13.37891 -13.13568 -12.79451 -12.74465 -12.61186 -12.45730 -12.30525 -11.90843 -11.49756 -11.41626 -11.31526 -11.20433 -11.16277 -10.62034 -10.32984 -10.23652 -9.92767 -9.81040 -9.63306 -9.24852 -9.22913 -9.01115 -8.57480 -8.32366 -7.09690 -6.58527 -4.32526 0.23703 0.64715 0.96578 1.10115 1.88497 2.31986 2.58501 2.75492 2.93341 3.15130 3.17176 3.25011 3.43994 3.49890 3.63678 3.95541 4.01364 4.17611 4.34369 4.49892 4.56227 4.70629 4.73365 4.86551 4.91670 5.00834 5.06769 5.13831 5.17517 5.24352 5.35358 5.40875 5.44365 5.54689 5.70181 5.82924 5.96173 5.98409 6.01275 6.16410 6.23220 6.30438 6.38101 6.52132 6.71438 6.93622 7.45982 7.56492 7.70040 8.20704 8.30367 8.93397 10.48851 Molecular weight = 369.10amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.001719 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.576107 B =16288.280613 C =17153.701467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.103 4.103 4 C -0.140 4.140 5 C 0.142 3.858 6 N -0.669 5.669 7 C 0.593 3.407 8 O -0.516 6.516 9 C -0.299 4.299 10 C 0.227 3.773 11 N -0.463 5.463 12 C 0.446 3.554 13 N -0.492 5.492 14 C 0.233 3.767 15 S 0.213 5.787 16 C -0.551 4.551 17 H 0.109 0.891 18 C 0.079 3.921 19 N -0.872 5.872 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 N -0.348 5.348 25 N -0.328 5.328 26 C 0.295 3.705 27 C -0.134 4.134 28 C -0.114 4.114 29 C -0.103 4.103 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.411 0.589 36 H 0.180 0.820 37 H 0.277 0.723 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.062 5.540 -5.598 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.160 4.160 5 C 0.049 3.951 6 N -0.315 5.315 7 C 0.382 3.618 8 O -0.393 6.393 9 C -0.313 4.313 10 C 0.039 3.961 11 N -0.178 5.178 12 C 0.083 3.917 13 N -0.224 5.224 14 C -0.147 4.147 15 S 0.449 5.551 16 C -0.700 4.700 17 H 0.126 0.874 18 C -0.132 4.132 19 N -0.506 5.506 20 Si 0.759 3.241 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.188 5.188 25 N -0.106 5.106 26 C 0.166 3.834 27 C -0.190 4.190 28 C -0.134 4.134 29 C -0.122 4.122 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.197 0.803 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.595 3.868 -4.495 28.225 hybrid contribution 0.109 1.897 -1.063 2.177 sum -27.487 5.765 -5.558 28.629 Atomic orbital electron populations 1.20771 0.91218 1.02751 1.02226 1.19942 0.96174 0.93191 1.01063 1.20809 0.93284 0.97686 1.00414 1.20914 0.94552 0.96490 1.04032 1.17676 0.81870 0.94228 1.01373 1.43227 1.04905 1.31472 1.51857 1.17372 0.85614 0.81395 0.77425 1.90716 1.69251 1.33457 1.45839 1.19858 0.94325 1.00267 1.16866 1.23295 0.88686 0.94419 0.89746 1.67869 1.07881 1.23235 1.18792 1.23172 0.90168 0.85111 0.93255 1.71360 1.08689 1.18753 1.23633 1.28099 1.02046 0.90612 0.93904 1.83831 0.82212 1.25530 1.63501 1.23454 0.92787 1.09347 1.44377 0.87354 1.25128 0.97084 0.96994 0.93965 1.69922 1.13727 1.28091 1.38816 0.85887 0.78391 0.80137 0.79641 1.19784 1.20518 1.18923 1.78997 0.93739 1.14736 1.31300 1.48896 1.06083 1.18042 1.37545 1.20978 0.80269 0.95115 0.87018 1.21484 1.01930 0.93305 1.02274 1.21317 0.94117 0.97963 1.00027 1.20966 0.93636 0.97664 0.99916 0.91279 0.91583 0.91639 0.85732 0.85524 0.75233 0.80344 0.91278 0.88301 0.89555 0.85711 0.84100 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.10 -0.72 5.88 -104.59 -0.62 -1.34 16 3 C -0.10 -0.69 9.69 -39.61 -0.38 -1.07 16 4 C -0.14 -0.96 9.97 -39.38 -0.39 -1.36 16 5 C 0.14 1.20 6.29 -83.71 -0.53 0.67 16 6 N -0.67 -5.03 5.28 -10.79 -0.06 -5.09 16 7 C 0.59 6.07 7.59 -12.45 -0.09 5.97 16 8 O -0.52 -6.23 10.77 5.29 0.06 -6.17 16 9 C -0.30 -3.53 5.89 -104.86 -0.62 -4.15 16 10 C 0.23 2.57 10.76 -16.70 -0.18 2.39 16 11 N -0.46 -7.82 10.46 -13.48 -0.14 -7.96 16 12 C 0.45 9.30 8.97 -322.80 -2.90 6.40 16 13 N -0.49 -12.08 9.95 -14.51 -0.14 -12.23 16 14 C 0.23 5.68 8.17 -90.87 -0.74 4.94 16 15 S 0.21 5.46 21.89 -107.50 -2.35 3.10 16 16 C -0.55 -15.26 9.36 30.92 0.29 -14.97 16 17 H 0.11 3.08 6.85 -52.49 -0.36 2.72 16 18 C 0.08 2.11 5.49 -17.46 -0.10 2.01 16 19 N -0.87 -23.96 13.22 55.49 0.73 -23.22 16 20 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 24 N -0.35 -7.67 12.53 30.15 0.38 -7.29 16 25 N -0.33 -6.30 3.86 -9.66 -0.04 -6.34 16 26 C 0.30 4.36 6.91 -81.15 -0.56 3.80 16 27 C -0.13 -1.65 9.00 36.01 0.32 -1.33 16 28 C -0.11 -1.05 8.69 -39.39 -0.34 -1.40 16 29 C -0.10 -0.81 9.69 -39.61 -0.38 -1.20 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.41 1.81 6.96 -40.82 -0.28 1.52 16 36 H 0.18 1.01 6.54 -52.49 -0.34 0.66 16 37 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.14 7.97 -51.93 -0.41 0.73 16 40 H 0.12 1.46 5.67 -51.93 -0.29 1.16 16 41 H 0.14 1.43 6.24 -52.49 -0.33 1.11 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -33.77 376.35 -11.89 -45.65 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.11 Total: -1.19 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -6.86 Total: -0.79 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.73 Total: -62.14 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.06 Total: -6.17 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -2.35 Total: 3.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.77 -11.89 -45.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017070991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.189 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds