Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47350 * 2 1 4 4 C 1.34230 * 116.99753 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00198 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99664 * 179.97438 * 4 3 2 7 7 C 1.53119 * 109.52440 * 180.02562 * 6 4 3 8 8 C 1.53038 * 109.28291 * 182.44395 * 7 6 4 9 9 N 1.46849 * 109.52171 * 59.18030 * 8 7 6 10 10 C 1.38071 * 111.00109 * 174.16049 * 9 8 7 11 11 N 1.32402 * 119.46380 * 36.25494 * 10 9 8 12 12 C 1.32376 * 122.53503 * 179.74810 * 11 10 9 13 13 N 1.38073 * 119.46336 * 180.29958 * 12 11 10 14 14 C 1.40556 * 121.06786 * 0.52558 * 12 11 10 15 15 C 1.43199 * 120.61356 * 179.76825 * 14 12 11 16 16 N 9.40436 * 154.18377 * 206.19566 * 6 1 2 17 17 C 1.42280 * 118.77624 * 359.75060 * 14 12 11 18 18 C 1.40450 * 121.11168 * 180.02562 * 17 14 12 19 19 H 1.08001 * 119.99822 * 137.64299 * 18 17 14 20 20 C 1.40522 * 120.00380 * 317.63848 * 18 17 14 21 21 N 1.30486 * 119.99636 * 340.25132 * 20 18 17 22 22 Si 1.86794 * 120.00240 * 160.24592 * 20 18 17 23 23 H 1.48502 * 109.47215 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47069 * 120.00176 * 22 20 18 25 25 H 1.48496 * 109.47363 * 240.00593 * 22 20 18 26 26 C 1.40519 * 119.46378 * 216.52953 * 10 9 8 27 27 C 1.43197 * 120.61428 * 359.95194 * 26 10 9 28 28 N 8.34346 * 122.31615 * 42.70615 * 2 1 3 29 29 C 1.46845 * 111.19707 * 298.26150 * 9 8 7 30 30 C 1.53034 * 109.52737 * 61.74314 * 29 9 8 31 31 H 1.09003 * 109.46979 * 60.00210 * 1 2 3 32 32 H 1.08998 * 109.47598 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47495 * 300.00576 * 1 2 3 34 34 H 1.08994 * 109.47439 * 239.99341 * 2 1 3 35 35 H 1.09007 * 109.46665 * 119.99402 * 2 1 3 36 36 H 1.08994 * 109.57988 * 300.16517 * 6 4 3 37 37 H 1.08998 * 109.50221 * 62.49987 * 7 6 4 38 38 H 1.09004 * 109.50418 * 302.38514 * 7 6 4 39 39 H 1.08999 * 109.46134 * 179.19232 * 8 7 6 40 40 H 1.08998 * 109.46066 * 299.16859 * 8 7 6 41 41 H 0.96998 * 119.99536 * 180.23073 * 13 12 11 42 42 H 0.97001 * 120.00595 * 0.22298 * 13 12 11 43 43 H 0.97004 * 119.99967 * 175.14241 * 21 20 18 44 44 H 1.09000 * 109.46144 * 301.72117 * 29 9 8 45 45 H 1.09008 * 109.46466 * 181.75674 * 29 9 8 46 46 H 1.08997 * 109.50852 * 180.88115 * 30 29 9 47 47 H 1.09000 * 109.50554 * 60.76016 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9372 0.0000 7 6 5.4500 2.8585 0.0001 8 6 6.0289 4.2738 0.0612 9 7 5.5555 4.9456 1.2781 10 6 6.1613 6.1768 1.4313 11 7 6.4221 6.9119 0.3614 12 6 6.9961 8.1022 0.4381 13 7 7.2333 8.8177 -0.7188 14 6 7.3724 8.6475 1.6777 15 6 7.9973 9.9340 1.7490 16 7 8.4930 10.9540 1.8078 17 6 7.1206 7.8978 2.8605 18 6 7.4758 8.3959 4.1248 19 1 6.7980 8.2861 4.9583 20 6 8.7132 9.0370 4.3052 21 7 9.6788 8.8441 3.4490 22 14 8.9757 10.1654 5.7705 23 1 7.7354 10.2147 6.5857 24 1 10.0927 9.6472 6.6005 25 1 9.3076 11.5309 5.2905 26 6 6.4963 6.6268 2.7196 27 6 6.2142 5.8216 3.8696 28 7 5.9903 5.1815 4.7824 29 6 4.0927 5.0751 1.2782 30 6 3.4560 3.6837 1.2536 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.5840 3.4715 -0.8883 37 1 5.7891 2.3656 -0.9110 38 1 5.7851 2.2905 0.8681 39 1 7.1175 4.2206 0.0759 40 1 5.7047 4.8368 -0.8140 41 1 7.6565 9.6892 -0.6718 42 1 6.9768 8.4488 -1.5784 43 1 10.5082 9.3400 3.5335 44 1 3.7776 5.6344 0.3974 45 1 3.7750 5.6040 2.1769 46 1 2.3705 3.7804 1.2379 47 1 3.7597 3.1287 2.1412 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025398039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -4.599190 kcal Electronic energy + Delta-G solvation = -33030.971874 eV Core-core repulsion = 28599.244512 eV Total energy + Delta-G solvation = -4431.727362 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.87237 -39.90209 -38.25283 -36.79441 -35.66601 -35.55080 -34.40959 -34.05778 -32.57232 -31.87073 -31.08199 -30.73933 -28.62617 -26.72274 -25.94420 -23.54993 -23.16775 -22.39897 -21.96156 -21.10443 -19.74943 -19.07496 -18.07239 -17.78741 -17.39793 -16.74028 -16.55774 -16.09961 -15.86117 -15.37186 -14.98979 -14.91510 -14.49351 -14.22473 -13.93595 -13.78732 -13.45640 -13.36068 -13.23203 -13.00036 -12.96465 -12.41191 -12.29653 -12.20661 -12.15116 -11.98251 -11.91574 -11.83709 -11.76362 -11.67769 -11.50263 -11.31616 -11.18321 -11.06660 -10.90570 -10.75057 -10.68547 -10.55734 -10.46050 -10.29091 -9.85799 -9.51779 -8.97030 -8.41124 -8.18714 -7.28969 -7.00437 -5.11025 1.65752 2.09491 2.33420 2.49451 2.94080 2.98983 3.02337 3.69788 3.73102 3.84963 3.87879 4.03880 4.15775 4.38530 4.40949 4.56437 4.61624 4.64594 4.69293 4.71873 4.97141 5.06240 5.12048 5.23568 5.38357 5.38744 5.41412 5.46369 5.46781 5.48243 5.62216 5.66008 5.67974 5.78649 5.85280 5.96576 6.07504 6.12437 6.28571 6.30020 6.40527 6.59726 6.65028 6.87481 7.11080 7.14079 7.60577 7.63867 7.67339 7.93927 8.07396 8.12344 8.29387 8.78628 8.83997 9.00643 9.68596 Molecular weight = 369.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002366 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.014192 B =11833.698278 C =12806.333972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.507 6.507 6 C -0.080 4.080 7 C -0.103 4.103 8 C 0.068 3.932 9 N -0.487 5.487 10 C 0.413 3.587 11 N -0.635 5.635 12 C 0.487 3.513 13 N -0.850 5.850 14 C -0.228 4.228 15 C 0.325 3.675 16 N -0.503 5.503 17 C 0.234 3.766 18 C -0.443 4.443 19 H 0.099 0.901 20 C 0.086 3.914 21 N -0.747 5.747 22 Si 0.902 3.098 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.196 4.196 27 C 0.318 3.682 28 N -0.493 5.493 29 C 0.067 3.933 30 C -0.106 4.106 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.403 0.597 42 H 0.398 0.602 43 H 0.294 0.706 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 -9.032 -10.097 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.394 6.394 6 C -0.099 4.099 7 C -0.140 4.140 8 C -0.059 4.059 9 N -0.209 5.209 10 C 0.182 3.818 11 N -0.362 5.362 12 C 0.248 3.752 13 N -0.392 5.392 14 C -0.242 4.242 15 C 0.013 3.987 16 N -0.183 5.183 17 C 0.223 3.777 18 C -0.471 4.471 19 H 0.117 0.883 20 C -0.140 4.140 21 N -0.369 5.369 22 Si 0.724 3.276 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.210 4.210 27 C 0.006 3.994 28 N -0.171 5.171 29 C -0.059 4.059 30 C -0.144 4.144 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.233 0.767 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.314 -9.418 -9.026 17.268 hybrid contribution 0.478 1.043 -0.003 1.147 sum -10.836 -8.375 -9.030 16.404 Atomic orbital electron populations 1.21804 0.92653 1.02895 1.03592 1.23010 0.95355 0.80462 1.02529 1.86521 1.24816 1.32155 1.84022 1.23870 0.80341 0.92814 0.71859 1.90661 1.60422 1.43199 1.45130 1.21220 0.97276 0.89363 1.02011 1.21587 0.91031 0.97589 1.03843 1.21953 1.00611 0.92404 0.90898 1.59598 1.06363 1.16298 1.38607 1.18806 0.89198 0.86413 0.87396 1.66792 1.29029 1.07822 1.32570 1.17624 0.86065 0.86698 0.84777 1.42095 1.68623 1.22162 1.06289 1.16124 1.22194 0.93035 0.92896 1.24929 0.90765 0.91581 0.91378 1.80977 1.13558 1.14051 1.09723 1.16987 0.82901 0.86177 0.91678 1.19621 1.01161 1.30548 0.95813 0.88332 1.25967 0.94797 0.94664 0.98536 1.69547 1.03879 1.29738 1.33725 0.86289 0.80119 0.80355 0.80803 1.17606 1.19269 1.18702 1.16411 1.21574 0.96010 0.86994 1.25023 0.91291 0.91329 0.91732 1.81051 1.13293 1.11602 1.11203 1.22062 0.85236 0.96154 1.02433 1.21610 1.00573 0.95789 0.96448 0.91493 0.90347 0.91367 0.91376 0.91253 0.87390 0.90559 0.90069 0.89881 0.92422 0.76721 0.77389 0.89419 0.93114 0.89664 0.89887 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.81 10.15 -39.26 -0.40 -4.20 16 4 C 0.47 5.60 7.26 36.00 0.26 5.86 16 5 O -0.51 -7.39 15.72 -18.75 -0.29 -7.69 16 6 C -0.08 -0.85 2.70 -91.65 -0.25 -1.10 16 7 C -0.10 -1.22 4.68 -26.65 -0.12 -1.35 16 8 C 0.07 0.92 4.90 -3.83 -0.02 0.90 16 9 N -0.49 -7.56 3.96 -173.08 -0.69 -8.25 16 10 C 0.41 7.51 5.56 -155.39 -0.86 6.65 16 11 N -0.64 -11.16 9.14 -11.33 -0.10 -11.26 16 12 C 0.49 8.87 7.74 -155.40 -1.20 7.67 16 13 N -0.85 -12.27 8.96 31.23 0.28 -11.99 16 14 C -0.23 -4.81 5.52 -105.55 -0.58 -5.40 16 15 C 0.32 7.11 10.31 -22.49 -0.23 6.88 16 16 N -0.50 -11.38 18.44 41.82 0.77 -10.61 16 17 C 0.23 5.23 5.36 -105.95 -0.57 4.66 16 18 C -0.44 -10.33 7.97 -37.89 -0.30 -10.63 16 19 H 0.10 2.28 7.80 -52.49 -0.41 1.87 16 20 C 0.09 1.99 4.14 -17.26 -0.07 1.92 16 21 N -0.75 -17.68 11.05 55.58 0.61 -17.06 16 22 Si 0.90 18.19 29.61 -169.99 -5.03 13.15 16 23 H -0.25 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.20 -4.09 5.84 -105.55 -0.62 -4.70 16 27 C 0.32 6.88 13.93 -22.44 -0.31 6.57 16 28 N -0.49 -11.06 18.54 41.88 0.78 -10.28 16 29 C 0.07 0.88 5.39 -3.84 -0.02 0.86 16 30 C -0.11 -1.18 5.31 -26.65 -0.14 -1.32 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.11 8.04 -51.93 -0.42 0.70 16 39 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 41 H 0.40 5.72 7.62 -40.82 -0.31 5.41 16 42 H 0.40 4.69 8.95 -40.82 -0.37 4.33 16 43 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.19 8.10 -51.92 -0.42 0.77 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -27.72 406.08 -8.49 -36.21 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.11 Total: 8.18 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: -4.43 Total: 17.69 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: 1.65 Total: -69.46 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.69 Total: -11.89 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.72 -8.49 -36.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025398039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.614 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds