Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21256 * 120.00223 * 2 1 4 4 C 1.47190 * 119.99799 * 180.02562 * 2 1 3 5 5 C 1.39885 * 120.13774 * 359.97438 * 4 2 1 6 6 C 1.37914 * 119.97648 * 180.02562 * 5 4 2 7 7 C 1.38283 * 120.25722 * 359.72611 * 6 5 4 8 8 C 1.39028 * 120.27458 * 0.55433 * 7 6 5 9 9 N 1.39713 * 119.98881 * 179.72456 * 8 7 6 10 10 C 1.46497 * 120.00056 * 359.72464 * 9 8 7 11 11 C 1.50707 * 109.47153 * 180.02562 * 10 9 8 12 12 O 1.21297 * 119.99563 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00002 * 180.02562 * 11 10 9 14 14 C 1.39942 * 119.99799 * 175.96006 * 13 11 10 15 15 C 1.38681 * 120.11707 * 34.38985 * 14 13 11 16 16 C 1.38215 * 120.01772 * 179.97438 * 15 14 13 17 17 C 1.38392 * 120.25617 * 0.02738 * 16 15 14 18 18 C 1.38091 * 120.22500 * 359.97283 * 17 16 15 19 19 C 1.38989 * 119.97664 * 0.02562 * 18 17 16 20 20 S 1.76199 * 120.12408 * 180.02562 * 19 18 17 21 21 C 1.76201 * 99.99925 * 353.11271 * 20 19 18 22 22 H 1.08000 * 119.99974 * 5.09920 * 21 20 19 23 23 C 1.38688 * 119.99678 * 185.09953 * 21 20 19 24 24 N 1.31656 * 119.99875 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00390 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47326 * 89.99996 * 25 23 21 27 27 H 1.48505 * 109.47085 * 210.00002 * 25 23 21 28 28 H 1.48500 * 109.47256 * 329.99772 * 25 23 21 29 29 C 1.38609 * 120.01740 * 359.44597 * 8 7 6 30 30 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47384 * 300.00233 * 1 2 3 32 32 H 1.09007 * 109.47060 * 59.99637 * 1 2 3 33 33 H 1.08001 * 120.00854 * 0.02562 * 5 4 2 34 34 H 1.07998 * 119.86874 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.86630 * 180.27197 * 7 6 5 36 36 H 0.97003 * 120.00108 * 179.72705 * 9 8 7 37 37 H 1.08998 * 109.47480 * 60.00389 * 10 9 8 38 38 H 1.09003 * 109.47287 * 299.99825 * 10 9 8 39 39 H 0.96998 * 120.00320 * 355.95432 * 13 11 10 40 40 H 1.08000 * 119.98619 * 0.26383 * 15 14 13 41 41 H 1.08003 * 119.87617 * 179.97438 * 16 15 14 42 42 H 1.07991 * 119.89241 * 179.97438 * 17 16 15 43 43 H 1.08001 * 120.00955 * 180.02562 * 18 17 16 44 44 H 0.96995 * 120.00270 * 180.02562 * 24 23 21 45 45 H 1.07999 * 120.12306 * 180.25383 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2428 -1.2747 -0.0006 5 6 1.5462 -2.4878 -0.0006 6 6 2.2391 -3.6803 -0.0006 7 6 3.6220 -3.6826 -0.0063 8 6 4.3249 -2.4832 -0.0004 9 7 5.7220 -2.4926 -0.0005 10 6 6.4460 -3.7662 -0.0005 11 6 7.9295 -3.5008 0.0001 12 8 8.3414 -2.3599 0.0001 13 7 8.7984 -4.5310 -0.0003 14 6 10.1736 -4.2864 -0.0851 15 6 10.7185 -3.1608 0.5144 16 6 12.0771 -2.9215 0.4298 17 6 12.8990 -3.8014 -0.2524 18 6 12.3674 -4.9254 -0.8532 19 6 11.0025 -5.1754 -0.7740 20 16 10.3202 -6.6087 -1.5386 21 6 11.7407 -7.2047 -2.3940 22 1 12.6957 -6.7188 -2.2589 23 6 11.6323 -8.2979 -3.2406 24 7 12.6936 -8.7429 -3.8801 25 14 9.9804 -9.1379 -3.4747 26 1 9.2585 -8.5036 -4.6068 27 1 10.1945 -10.5777 -3.7687 28 1 9.1750 -9.0003 -2.2347 29 6 3.6401 -1.2781 -0.0005 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.4662 -2.4905 -0.0006 34 1 1.6996 -4.6158 -0.0010 35 1 4.1582 -4.6201 -0.0107 36 1 6.2127 -1.6558 -0.0004 37 1 6.1789 -4.3360 -0.8905 38 1 6.1789 -4.3360 0.8895 39 1 8.4705 -5.4420 0.0582 40 1 10.0816 -2.4735 1.0515 41 1 12.4989 -2.0439 0.8972 42 1 13.9597 -3.6084 -0.3152 43 1 13.0121 -5.6100 -1.3843 44 1 12.6178 -9.5072 -4.4725 45 1 4.1845 -0.3453 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030289328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -9.307853 kcal Electronic energy + Delta-G solvation = -28623.015951 eV Core-core repulsion = 24503.825864 eV Total energy + Delta-G solvation = -4119.190087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60468 -40.18752 -38.80089 -37.99312 -35.59727 -34.65129 -32.80313 -31.87533 -31.26204 -30.50367 -29.83065 -28.84234 -26.71357 -26.04996 -24.02245 -22.65306 -22.46118 -22.14722 -20.38231 -19.77624 -18.65803 -18.11020 -17.31791 -16.81391 -16.35089 -16.17839 -15.97803 -15.84023 -15.41139 -15.34396 -15.30175 -14.99646 -14.35336 -14.25801 -13.98389 -13.88788 -13.74748 -13.43177 -13.37155 -12.86347 -12.81785 -12.72901 -12.50426 -12.34251 -12.04771 -11.97208 -11.48981 -11.47733 -11.33335 -11.20735 -10.75275 -10.51393 -10.23904 -10.07834 -9.97142 -9.67255 -9.57539 -9.28040 -9.07585 -8.86783 -7.93565 -7.76945 -6.90214 -6.57900 -4.34898 0.39521 1.24085 1.62883 1.90637 2.16251 2.49690 2.63499 2.77243 3.06605 3.14140 3.27363 3.37983 3.58010 3.76886 3.99053 4.22490 4.35662 4.51938 4.53304 4.60923 4.69199 4.82641 4.83603 4.92852 5.00835 5.02083 5.08011 5.17384 5.35016 5.45848 5.51951 5.52902 5.62082 5.71987 5.91904 5.94553 6.03754 6.04709 6.15346 6.37660 6.39889 6.66507 6.69428 6.90567 6.96012 7.06700 7.19984 7.37772 7.45699 7.50688 7.65887 8.04251 8.24422 8.83295 10.49483 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.001986 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.132531 B =14093.637794 C =16112.022616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.395 3.605 3 O -0.459 6.459 4 C -0.127 4.127 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.170 4.170 8 C 0.211 3.789 9 N -0.733 5.733 10 C 0.106 3.894 11 C 0.508 3.492 12 O -0.523 6.523 13 N -0.652 5.652 14 C 0.121 3.879 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.079 4.079 20 S -0.054 6.054 21 C -0.534 4.534 22 H 0.111 0.889 23 C 0.099 3.901 24 N -0.863 5.863 25 Si 0.858 3.142 26 H -0.264 1.264 27 H -0.269 1.269 28 H -0.240 1.240 29 C -0.134 4.134 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.414 0.586 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.412 0.588 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.276 0.724 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.071 8.689 9.508 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.273 3.727 3 O -0.335 6.335 4 C -0.128 4.128 5 C -0.157 4.157 6 C -0.102 4.102 7 C -0.193 4.193 8 C 0.107 3.893 9 N -0.366 5.366 10 C -0.023 4.023 11 C 0.295 3.705 12 O -0.399 6.399 13 N -0.297 5.297 14 C 0.020 3.980 15 C -0.124 4.124 16 C -0.164 4.164 17 C -0.132 4.132 18 C -0.145 4.145 19 C -0.196 4.196 20 S 0.197 5.803 21 C -0.680 4.680 22 H 0.128 0.872 23 C -0.112 4.112 24 N -0.497 5.497 25 Si 0.682 3.318 26 H -0.189 1.189 27 H -0.194 1.194 28 H -0.165 1.165 29 C -0.157 4.157 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.252 0.748 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.249 0.751 40 H 0.149 0.851 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.086 0.914 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.486 9.040 9.259 25.082 hybrid contribution 0.840 -0.404 -0.423 1.024 sum -20.645 8.636 8.837 24.060 Atomic orbital electron populations 1.22237 0.93760 1.04961 1.04872 1.22569 0.91700 0.87679 0.70771 1.90547 1.72150 1.34481 1.36303 1.20210 0.93563 0.94727 1.04333 1.21222 0.99784 0.91349 1.03362 1.20870 0.93442 0.98047 0.97791 1.20952 0.94692 0.96567 1.07112 1.17674 0.83289 0.93723 0.94572 1.44371 1.02231 1.07990 1.82001 1.21048 0.88917 0.88205 1.04088 1.20472 0.88319 0.85335 0.76390 1.90693 1.79058 1.21476 1.48663 1.43197 1.04848 1.10040 1.71620 1.17140 0.81402 0.97478 1.01994 1.20948 0.95147 0.96837 0.99483 1.20837 0.93168 1.00072 1.02357 1.21046 0.99304 0.94673 0.98191 1.21449 0.93985 0.98417 1.00641 1.21964 0.96682 1.00049 1.00887 1.82543 1.20839 1.20629 1.56288 1.22629 0.95058 1.19482 1.30835 0.87157 1.24804 0.97301 0.95553 0.93565 1.69916 1.28907 1.24502 1.26366 0.86774 0.83860 0.80066 0.81105 1.18878 1.19414 1.16475 1.20824 0.93363 0.96952 1.04561 0.89568 0.88826 0.88811 0.85243 0.85390 0.85488 0.74764 0.88515 0.88816 0.75131 0.85093 0.86651 0.86598 0.83605 0.91401 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 10.19 36.00 0.37 -0.65 16 2 C 0.39 3.64 7.23 -30.68 -0.22 3.41 16 3 O -0.46 -5.93 17.09 5.58 0.10 -5.84 16 4 C -0.13 -1.17 5.87 -105.09 -0.62 -1.79 16 5 C -0.14 -0.97 9.44 -39.08 -0.37 -1.34 16 6 C -0.08 -0.59 10.02 -39.68 -0.40 -0.99 16 7 C -0.17 -1.43 9.31 -39.27 -0.37 -1.79 16 8 C 0.21 2.12 6.65 -83.84 -0.56 1.57 16 9 N -0.73 -7.68 5.70 -59.84 -0.34 -8.02 16 10 C 0.11 1.01 5.39 -5.19 -0.03 0.98 16 11 C 0.51 6.82 7.74 -10.98 -0.09 6.74 16 12 O -0.52 -8.53 13.09 5.54 0.07 -8.46 16 13 N -0.65 -9.46 5.02 -9.70 -0.05 -9.51 16 14 C 0.12 2.16 6.32 -83.44 -0.53 1.64 16 15 C -0.10 -1.76 8.69 -39.43 -0.34 -2.10 16 16 C -0.14 -2.29 10.04 -39.53 -0.40 -2.68 16 17 C -0.11 -1.91 10.03 -39.58 -0.40 -2.31 16 18 C -0.12 -2.41 9.26 -39.36 -0.36 -2.78 16 19 C -0.08 -1.61 6.12 -38.75 -0.24 -1.85 16 20 S -0.05 -1.18 18.50 -107.50 -1.99 -3.17 16 21 C -0.53 -13.95 9.62 30.90 0.30 -13.66 16 22 H 0.11 3.04 5.06 -52.49 -0.27 2.77 16 23 C 0.10 2.61 5.50 -17.46 -0.10 2.52 16 24 N -0.86 -24.00 13.97 55.48 0.78 -23.23 16 25 Si 0.86 19.12 27.73 -169.99 -4.71 14.41 16 26 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.24 -5.06 6.74 56.52 0.38 -4.67 16 29 C -0.13 -1.43 9.44 -38.89 -0.37 -1.79 16 30 H 0.09 0.26 5.60 -51.93 -0.29 -0.03 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.13 0.55 5.92 -52.49 -0.31 0.24 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.86 6.71 -52.49 -0.35 0.51 16 36 H 0.41 4.78 7.45 -40.82 -0.30 4.47 16 37 H 0.10 0.81 7.93 -51.93 -0.41 0.40 16 38 H 0.09 0.67 7.95 -51.93 -0.41 0.26 16 39 H 0.41 5.18 7.96 -40.82 -0.32 4.86 16 40 H 0.13 2.18 6.20 -52.49 -0.33 1.85 16 41 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 42 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.15 3.19 4.95 -52.49 -0.26 2.93 16 44 H 0.28 7.10 8.31 -40.82 -0.34 6.77 16 45 H 0.13 1.48 7.65 -52.49 -0.40 1.08 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -31.91 391.05 -9.89 -41.80 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.93 Total: 13.00 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.71 Total: -16.88 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.38 Total: -40.76 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.17 Total: -14.29 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -1.99 Total: -3.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.91 -9.89 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030289328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.495 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds