Wall clock time and date at job start Tue Mar 31 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31727 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47121 * 299.99735 * 3 2 1 6 6 H 1.48506 * 109.47269 * 60.00103 * 3 2 1 7 7 C 1.38524 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99788 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.76202 * 100.00102 * 179.97438 * 9 7 2 11 11 N 1.31461 * 126.38901 * 0.02562 * 10 9 7 12 12 N 1.28504 * 110.08196 * 179.75762 * 11 10 9 13 13 C 1.31656 * 109.97232 * 0.39225 * 12 11 10 14 14 C 1.47496 * 126.46486 * 179.87834 * 13 12 11 15 15 C 1.35957 * 126.70127 * 226.59715 * 14 13 12 16 16 N 1.36322 * 109.70738 * 179.73189 * 15 14 13 17 17 H 0.97003 * 124.87501 * 180.31840 * 16 15 14 18 18 C 1.37855 * 110.24255 * 0.41226 * 16 15 14 19 19 C 1.39148 * 133.18370 * 179.88023 * 18 16 15 20 20 C 1.37745 * 119.93393 * 179.68460 * 19 18 16 21 21 C 1.38790 * 120.63472 * 359.97438 * 20 19 18 22 22 C 1.37710 * 120.32735 * 0.04933 * 21 20 19 23 23 C 1.39368 * 119.67915 * 359.95044 * 22 21 20 24 24 N 1.36997 * 126.38999 * 179.97438 * 10 9 7 25 25 C 1.46496 * 127.17485 * 0.03826 * 24 10 9 26 26 C 1.53000 * 109.47497 * 275.13145 * 25 24 10 27 27 H 1.09000 * 110.27008 * 55.63862 * 26 25 24 28 28 C 1.54943 * 110.31049 * 177.83236 * 26 25 24 29 29 C 1.55312 * 100.93943 * 155.36500 * 28 26 25 30 30 C 1.54380 * 102.25025 * 325.86629 * 29 28 26 31 31 O 1.43238 * 107.59125 * 21.36051 * 30 29 28 32 32 H 0.96995 * 120.00034 * 359.97438 * 1 2 3 33 33 H 1.08000 * 125.14695 * 359.97438 * 15 14 13 34 34 H 1.08002 * 120.03232 * 359.66818 * 19 18 16 35 35 H 1.08000 * 119.68210 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.83298 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.16265 * 179.97438 * 22 21 20 38 38 H 1.09006 * 109.47380 * 35.13567 * 25 24 10 39 39 H 1.08998 * 109.47258 * 155.13395 * 25 24 10 40 40 H 1.08999 * 111.12822 * 273.27738 * 28 26 25 41 41 H 1.08997 * 111.12353 * 37.44545 * 28 26 25 42 42 H 1.09006 * 110.84468 * 207.68086 * 29 28 26 43 43 H 1.08993 * 111.02185 * 84.13579 * 29 28 26 44 44 H 1.09002 * 109.83446 * 261.84367 * 30 29 28 45 45 H 1.09001 * 109.90600 * 140.91954 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3173 0.0000 0.0000 3 14 2.2513 1.6177 0.0000 4 1 3.7112 1.3463 0.0006 5 1 1.8926 2.3963 -1.2125 6 1 1.8926 2.3964 1.2125 7 6 2.0099 -1.1997 0.0005 8 1 3.0898 -1.1997 0.0001 9 16 1.1289 -2.7256 0.0005 10 6 2.4786 -3.8582 0.0005 11 7 3.7563 -3.5489 0.0010 12 7 4.4692 -4.6181 0.0060 13 6 3.6891 -5.6786 0.0005 14 6 4.1253 -7.0876 0.0010 15 6 3.6542 -8.0843 -0.7948 16 7 4.3039 -9.2478 -0.5075 17 1 4.1426 -10.0966 -0.9485 18 6 5.2215 -9.0452 0.5011 19 6 6.1203 -9.8837 1.1534 20 6 6.9349 -9.3808 2.1437 21 6 6.8703 -8.0410 2.5002 22 6 5.9873 -7.1949 1.8671 23 6 5.1568 -7.6895 0.8632 24 7 2.3923 -5.2255 0.0010 25 6 1.1716 -6.0354 0.0009 26 6 0.6747 -6.2093 1.4374 27 1 0.5311 -5.2366 1.9077 28 6 -0.6469 -7.0180 1.4552 29 6 -0.6095 -7.6124 2.8896 30 6 0.9009 -7.8457 3.1082 31 8 1.6066 -6.9968 2.1955 32 1 -0.4850 0.8400 0.0004 33 1 2.8848 -7.9705 -1.5440 34 1 6.1788 -10.9279 0.8836 35 1 7.6313 -10.0352 2.6470 36 1 7.5154 -7.6603 3.2783 37 1 5.9389 -6.1529 2.1470 38 1 0.4044 -5.5362 -0.5911 39 1 1.3845 -7.0133 -0.4308 40 1 -1.5092 -6.3645 1.3232 41 1 -0.6350 -7.8065 0.7028 42 1 -1.1578 -8.5534 2.9339 43 1 -1.0016 -6.9022 3.6174 44 1 1.1467 -8.8887 2.9085 45 1 1.1710 -7.5922 4.1333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032876779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:11 Heat of formation + Delta-G solvation = 84.977345 kcal Electronic energy + Delta-G solvation = -31039.420149 eV Core-core repulsion = 26956.611327 eV Total energy + Delta-G solvation = -4082.808823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86058 -41.01151 -39.41400 -36.84754 -34.59421 -32.59918 -32.49848 -32.19495 -30.15746 -29.94390 -29.29824 -28.06052 -25.93391 -25.60678 -22.89159 -22.64969 -22.08276 -21.76821 -21.44276 -21.06353 -19.37847 -17.97079 -17.88959 -16.89583 -16.42591 -16.22945 -16.08111 -15.49565 -15.09623 -15.01529 -14.87775 -14.63457 -14.34090 -14.17552 -13.75854 -13.58674 -13.50903 -13.08937 -12.97960 -12.72203 -12.28835 -11.92999 -11.72935 -11.64932 -11.64520 -11.36984 -11.25650 -11.12335 -11.03948 -10.98713 -10.85880 -10.45552 -10.17741 -10.00120 -9.69951 -9.63704 -9.48829 -9.22656 -8.78497 -8.73604 -8.22128 -7.58741 -6.63047 -6.42217 -4.15166 1.11452 1.64521 2.16652 2.47669 2.91935 3.01686 3.22014 3.27477 3.34814 3.41660 3.74613 3.80588 4.02653 4.06348 4.32491 4.53744 4.73139 4.73791 4.79433 4.79898 4.86798 5.01641 5.02544 5.09707 5.13732 5.16122 5.23649 5.36219 5.40240 5.49101 5.56166 5.59629 5.62224 5.72317 5.74442 5.78951 5.83469 6.00806 6.10508 6.28054 6.40780 6.56261 6.60673 6.71224 6.80046 6.88394 7.02408 7.16642 7.43042 7.51865 7.63168 8.44336 9.10964 9.62774 10.66325 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003232 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.481982 B = 8660.533751 C =10313.674739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.930 3.070 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.105 0.895 9 S 0.123 5.877 10 C 0.170 3.830 11 N -0.305 5.305 12 N -0.280 5.280 13 C 0.227 3.773 14 C -0.063 4.063 15 C 0.063 3.937 16 N -0.589 5.589 17 H 0.416 0.584 18 C 0.096 3.904 19 C -0.137 4.137 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.052 4.052 23 C -0.070 4.070 24 N -0.470 5.470 25 C 0.117 3.883 26 C 0.064 3.936 27 H 0.087 0.913 28 C -0.147 4.147 29 C -0.154 4.154 30 C 0.052 3.948 31 O -0.363 6.363 32 H 0.272 0.728 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -23.425 2.543 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.674 4.674 8 H 0.123 0.877 9 S 0.355 5.645 10 C -0.201 4.201 11 N -0.150 5.150 12 N -0.120 5.120 13 C -0.041 4.041 14 C -0.073 4.073 15 C -0.067 4.067 16 N -0.191 5.191 17 H 0.253 0.747 18 C -0.010 4.010 19 C -0.158 4.158 20 C -0.118 4.118 21 C -0.171 4.171 22 C -0.070 4.070 23 C -0.075 4.075 24 N -0.167 5.167 25 C -0.007 4.007 26 C 0.005 3.995 27 H 0.105 0.895 28 C -0.185 4.185 29 C -0.191 4.191 30 C -0.025 4.025 31 O -0.282 6.282 32 H 0.081 0.919 33 H 0.186 0.814 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.300 -22.647 2.445 22.781 hybrid contribution 0.123 -0.016 -0.163 0.205 sum 0.423 -22.664 2.282 22.782 Atomic orbital electron populations 1.69993 1.05971 1.28143 1.47611 1.25031 0.95192 0.99550 0.93671 0.85903 0.80264 0.80473 0.77820 1.18810 1.20452 1.20447 1.23209 0.97224 0.89010 1.57907 0.87663 1.83262 0.98065 0.95767 1.87396 1.28309 1.02191 0.85276 1.04322 1.74707 0.98981 1.18852 1.22415 1.74372 1.26303 0.94173 1.17194 1.21603 0.80471 0.93606 1.08451 1.17193 1.01325 0.87769 1.01043 1.21682 0.99415 0.84634 1.00944 1.41435 1.33989 1.10653 1.33055 0.74745 1.18160 0.94832 0.94972 0.93021 1.19916 0.98146 0.98329 0.99387 1.20751 0.98618 0.95541 0.96897 1.20887 1.00717 0.93613 1.01840 1.20633 0.93130 0.99971 0.93297 1.18792 0.98608 0.91689 0.98451 1.46305 1.06439 1.05505 1.58420 1.21938 0.85883 0.96046 0.96841 1.23416 0.88091 0.96244 0.91752 0.89495 1.23236 0.97962 0.99975 0.97343 1.23096 0.96849 1.02014 0.97160 1.23069 0.90824 0.94620 0.93988 1.88577 1.30998 1.55404 1.53260 0.91856 0.81388 0.86527 0.86004 0.86067 0.85658 0.87444 0.88930 0.89073 0.90248 0.90137 0.90270 0.91819 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 13.22 55.48 0.73 -23.85 16 2 C 0.07 2.03 5.49 -17.49 -0.10 1.93 16 3 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.84 9.36 30.84 0.29 -14.55 16 8 H 0.11 3.11 6.92 -52.49 -0.36 2.75 16 9 S 0.12 3.06 21.52 -107.50 -2.31 0.74 16 10 C 0.17 4.02 8.07 -87.76 -0.71 3.31 16 11 N -0.31 -7.96 11.02 30.80 0.34 -7.62 16 12 N -0.28 -6.71 12.24 32.53 0.40 -6.31 16 13 C 0.23 4.57 7.89 -153.79 -1.21 3.36 16 14 C -0.06 -1.04 6.01 -103.26 -0.62 -1.66 16 15 C 0.06 0.76 10.67 -16.37 -0.17 0.59 16 16 N -0.59 -5.92 6.03 -10.38 -0.06 -5.98 16 17 H 0.42 2.55 8.96 -40.82 -0.37 2.18 16 18 C 0.10 1.22 7.26 -83.98 -0.61 0.61 16 19 C -0.14 -1.47 10.07 -39.42 -0.40 -1.86 16 20 C -0.10 -1.06 10.01 -39.56 -0.40 -1.46 16 21 C -0.15 -1.89 10.03 -39.57 -0.40 -2.29 16 22 C -0.05 -0.81 10.09 -39.35 -0.40 -1.21 16 23 C -0.07 -1.11 6.36 -104.95 -0.67 -1.78 16 24 N -0.47 -9.10 2.82 -114.04 -0.32 -9.42 16 25 C 0.12 1.66 5.61 -4.04 -0.02 1.64 16 26 C 0.06 0.87 3.69 -25.71 -0.09 0.78 16 27 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 28 C -0.15 -1.39 6.57 -24.48 -0.16 -1.55 16 29 C -0.15 -1.35 7.02 -24.78 -0.17 -1.53 16 30 C 0.05 0.58 7.79 37.88 0.30 0.87 16 31 O -0.36 -5.46 11.02 -35.23 -0.39 -5.85 16 32 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 33 H 0.17 1.54 7.38 -52.49 -0.39 1.15 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 38 H 0.11 1.41 8.03 -51.93 -0.42 0.99 16 39 H 0.09 1.06 6.10 -51.93 -0.32 0.75 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -35.70 395.57 -11.85 -47.55 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.63 Total: 3.01 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -5.54 Total: -14.80 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 1.09 Total: -53.18 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.39 Total: -5.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.31 Total: 0.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.70 -11.85 -47.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032876779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.530 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds