Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29640 * 120.00348 * 2 1 4 4 O 1.41597 * 120.00243 * 185.45338 * 3 2 1 5 5 C 1.42898 * 114.00263 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00421 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99997 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00281 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47154 * 89.99636 * 9 8 6 11 11 H 1.08003 * 120.00196 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00268 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99771 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47411 * 60.00279 * 14 12 10 16 16 H 1.48504 * 109.47113 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47388 * 299.99813 * 14 12 10 18 18 C 1.46501 * 119.99940 * 359.97438 * 8 6 5 19 19 C 1.53007 * 109.47231 * 90.00178 * 18 8 6 20 20 C 1.47193 * 109.47198 * 180.02562 * 19 18 8 21 21 N 8.23636 * 111.84439 * 11.72132 * 2 1 3 22 22 C 1.46847 * 119.99914 * 179.97438 * 2 1 3 23 23 C 1.35827 * 125.12394 * 354.43202 * 22 2 1 24 24 C 1.46334 * 106.07177 * 180.02562 * 23 22 2 25 25 C 1.39649 * 134.18403 * 180.02562 * 24 23 22 26 26 C 1.36675 * 119.70609 * 179.97438 * 25 24 23 27 27 C 1.38784 * 120.43189 * 359.97438 * 26 25 24 28 28 C 1.37868 * 120.72759 * 359.97438 * 27 26 25 29 29 C 1.38946 * 119.86073 * 0.28771 * 28 27 26 30 30 O 1.34806 * 133.23855 * 180.40700 * 29 28 27 31 31 H 1.08996 * 109.47235 * 270.00416 * 1 2 3 32 32 H 1.08997 * 109.46847 * 29.99905 * 1 2 3 33 33 H 1.09000 * 109.47291 * 149.99970 * 1 2 3 34 34 H 1.08996 * 109.47462 * 300.00032 * 5 4 3 35 35 H 1.09001 * 109.47346 * 60.00510 * 5 4 3 36 36 H 1.08998 * 109.47711 * 210.00191 * 9 8 6 37 37 H 1.09001 * 109.47138 * 330.00362 * 9 8 6 38 38 H 0.96999 * 120.00310 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47030 * 209.99972 * 18 8 6 40 40 H 1.09005 * 109.47176 * 330.00153 * 18 8 6 41 41 H 1.09007 * 109.46740 * 300.00318 * 19 18 8 42 42 H 1.08993 * 109.46777 * 59.99719 * 19 18 8 43 43 H 1.07997 * 126.96588 * 359.97438 * 23 22 2 44 44 H 1.08000 * 120.15001 * 359.97438 * 25 24 23 45 45 H 1.08009 * 119.78358 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.63754 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.06580 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1552 1.1227 0.0000 4 8 3.5664 1.1254 -0.1165 5 6 4.1482 2.4305 -0.1029 6 6 5.6452 2.3145 -0.2328 7 8 6.1629 1.2219 -0.3272 8 7 6.4088 3.4251 -0.2430 9 6 7.8640 3.3124 -0.3687 10 6 8.2460 3.3411 -1.8261 11 1 7.4813 3.4344 -2.5831 12 6 9.5718 3.2482 -2.1933 13 7 10.5029 3.1341 -1.2716 14 14 10.0453 3.2845 -3.9999 15 1 9.5946 4.5639 -4.6043 16 1 11.5205 3.1702 -4.1274 17 1 9.3977 2.1490 -4.7044 18 6 5.7835 4.7450 -0.1284 19 6 5.6846 5.1361 1.3475 20 6 5.0558 6.4620 1.4627 21 7 4.5716 7.4856 1.5531 22 6 2.2412 -1.2717 0.0006 23 6 1.6743 -2.5013 0.1089 24 6 2.7777 -3.4615 0.0636 25 6 2.8591 -4.8542 0.1251 26 6 4.0795 -5.4653 0.0524 27 6 5.2365 -4.7108 -0.0826 28 6 5.1768 -3.3348 -0.1461 29 6 3.9477 -2.6914 -0.0687 30 8 3.5799 -1.3951 -0.1078 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 3.7556 3.0121 -0.9369 35 1 3.9021 2.9283 0.8350 36 1 8.3390 4.1464 0.1480 37 1 8.1954 2.3737 0.0753 38 1 11.4356 3.0692 -1.5299 39 1 6.3877 5.4806 -0.6595 40 1 4.7846 4.7129 -0.5635 41 1 5.0805 4.4004 1.8786 42 1 6.6834 5.1682 1.7826 43 1 0.6226 -2.7250 0.2091 44 1 1.9617 -5.4460 0.2297 45 1 4.1439 -6.5424 0.1002 46 1 6.1940 -5.2069 -0.1393 47 1 6.0838 -2.7582 -0.2516 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033392466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = 43.768190 kcal Electronic energy + Delta-G solvation = -32238.581469 eV Core-core repulsion = 27776.658723 eV Total energy + Delta-G solvation = -4461.922746 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43762 -39.38691 -38.15223 -37.38644 -36.83838 -35.41571 -35.05205 -32.92914 -32.68488 -30.87831 -30.54794 -29.78486 -28.87237 -28.01606 -26.14978 -24.04729 -23.84153 -22.65283 -22.55783 -21.55884 -19.97871 -18.71092 -18.21473 -17.65661 -17.43268 -16.51739 -16.34667 -16.28206 -16.24367 -15.81969 -15.62715 -14.81604 -14.73082 -14.61372 -14.27435 -14.13565 -13.93645 -13.84818 -13.69045 -13.35321 -13.22604 -13.11540 -12.90366 -12.62145 -12.45897 -12.39390 -12.30366 -12.14463 -12.04675 -11.81162 -11.51590 -11.29508 -11.04174 -11.01835 -10.89541 -10.62846 -10.40615 -10.34042 -10.20087 -9.74896 -9.59896 -9.02195 -8.67504 -8.48066 -8.15730 -7.90560 -6.09981 -4.14718 0.40205 1.28266 1.49050 2.29423 2.51295 2.66673 2.72592 2.80506 3.21722 3.30239 3.34729 3.38709 3.62218 3.68740 4.04202 4.20677 4.41230 4.49173 4.73972 4.79698 4.87992 4.95891 4.99696 5.02148 5.03797 5.09123 5.13686 5.17571 5.24931 5.26159 5.30594 5.34103 5.41555 5.51157 5.58692 5.75462 5.79457 6.01868 6.02865 6.08316 6.18939 6.26654 6.34432 6.56365 6.87719 7.07908 7.25134 7.31362 7.39615 7.56435 7.85886 8.14273 8.17506 8.79363 8.93580 9.50750 10.98148 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.007058 B = 0.002862 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.091094 B = 9779.470820 C =12827.054672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.194 3.806 3 N -0.327 5.327 4 O -0.182 6.182 5 C 0.048 3.952 6 C 0.512 3.488 7 O -0.509 6.509 8 N -0.593 5.593 9 C 0.248 3.752 10 C -0.531 4.531 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.115 3.885 19 C -0.052 4.052 20 C 0.217 3.783 21 N -0.444 5.444 22 C 0.023 3.977 23 C -0.167 4.167 24 C -0.142 4.142 25 C -0.072 4.072 26 C -0.139 4.139 27 C -0.092 4.092 28 C -0.101 4.101 29 C 0.069 3.931 30 O -0.152 6.152 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.164 0.836 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.135 0.865 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.704 -11.690 5.385 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 N -0.071 5.071 4 O -0.199 6.199 5 C -0.032 4.032 6 C 0.295 3.705 7 O -0.383 6.383 8 N -0.327 5.327 9 C 0.129 3.871 10 C -0.570 4.570 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.012 4.012 19 C -0.093 4.093 20 C -0.101 4.101 21 N -0.122 5.122 22 C -0.027 4.027 23 C -0.190 4.190 24 C -0.143 4.143 25 C -0.090 4.090 26 C -0.157 4.157 27 C -0.110 4.110 28 C -0.119 4.119 29 C 0.020 3.980 30 O -0.051 6.051 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.181 0.819 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.153 0.847 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.654 -9.691 5.491 22.591 hybrid contribution 0.820 -0.877 -1.017 1.574 sum -18.835 -10.569 4.473 22.056 Atomic orbital electron populations 1.20659 0.84367 1.04962 1.04530 1.23141 0.95811 0.84609 0.95979 1.76462 0.93823 1.24645 1.12159 1.90219 1.10420 1.27119 1.92137 1.22428 0.92603 0.85444 1.02770 1.19789 0.87002 0.85251 0.78426 1.90738 1.74009 1.26104 1.47400 1.48129 1.09887 1.03240 1.71445 1.19377 0.71394 0.98883 0.97414 1.21383 0.92340 1.51133 0.92117 0.92370 1.24903 0.96295 0.94896 0.97774 1.69903 1.00803 1.49645 1.32855 0.86575 0.77304 0.78659 0.85012 1.20210 1.21156 1.20161 1.21368 0.99622 0.87400 0.92792 1.19907 1.02305 0.86074 1.01024 1.29058 0.93173 0.94702 0.93130 1.81203 1.10182 1.12126 1.08656 1.21135 0.81556 0.95161 1.04867 1.22621 0.99252 0.89962 1.07157 1.19906 0.92617 0.94622 1.07137 1.20265 0.98204 0.91563 0.98984 1.20770 0.92186 1.00107 1.02682 1.21000 0.99076 0.92181 0.98744 1.20200 0.94872 0.94051 1.02796 1.19822 0.95574 0.81350 1.01275 1.84372 1.21536 1.25280 1.73939 0.88979 0.88962 0.89143 0.89806 0.90074 0.94417 0.93461 0.92577 0.88365 0.90644 0.87626 0.86295 0.81888 0.85599 0.85420 0.84677 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.90 36.00 0.36 -0.16 16 2 C 0.19 2.26 7.13 -80.04 -0.57 1.69 16 3 N -0.33 -4.67 11.36 34.95 0.40 -4.28 16 4 O -0.18 -3.25 8.84 -41.62 -0.37 -3.62 16 5 C 0.05 0.74 5.43 36.01 0.20 0.94 16 6 C 0.51 10.14 7.75 -10.98 -0.09 10.06 16 7 O -0.51 -12.69 16.08 -14.35 -0.23 -12.92 16 8 N -0.59 -11.11 2.46 -175.06 -0.43 -11.54 16 9 C 0.25 5.90 5.16 -5.20 -0.03 5.87 16 10 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 11 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.11 1.54 5.17 -4.04 -0.02 1.52 16 19 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 20 C 0.22 2.66 15.43 -20.77 -0.32 2.34 16 21 N -0.44 -6.59 18.54 42.15 0.78 -5.81 16 22 C 0.02 0.32 6.89 -36.96 -0.25 0.06 16 23 C -0.17 -1.80 10.35 -37.19 -0.38 -2.19 16 24 C -0.14 -1.79 6.38 -105.19 -0.67 -2.46 16 25 C -0.07 -0.72 10.06 -39.62 -0.40 -1.12 16 26 C -0.14 -1.32 9.98 -39.94 -0.40 -1.72 16 27 C -0.09 -0.99 10.01 -39.52 -0.40 -1.39 16 28 C -0.10 -1.42 10.07 -39.45 -0.40 -1.81 16 29 C 0.07 1.07 7.40 -38.39 -0.28 0.79 16 30 O -0.15 -2.68 8.78 -18.89 -0.17 -2.85 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.34 7.26 -51.93 -0.38 -0.03 16 34 H 0.08 1.15 7.40 -51.93 -0.38 0.76 16 35 H 0.08 1.01 7.18 -51.93 -0.37 0.63 16 36 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 41 H 0.11 0.94 7.22 -51.93 -0.37 0.57 16 42 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.16 1.06 7.52 -52.49 -0.39 0.66 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 417.56 15.07 6.29 6.29 Total: -1.00 -37.32 417.56 -8.23 -45.55 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.97 Total: -1.14 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -4.26 Total: -1.25 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 1.49 Total: -46.43 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.76 Total: -19.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.32 -8.23 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033392466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.314 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds