Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35976 * 116.99934 * 2 1 4 4 C 1.38540 * 120.08403 * 0.29387 * 3 2 1 5 5 C 1.38250 * 120.01524 * 180.27650 * 4 3 2 6 6 C 1.38276 * 120.18518 * 359.70775 * 5 4 3 7 7 C 1.38187 * 120.17096 * 359.97438 * 6 5 4 8 8 C 1.38756 * 119.97874 * 0.02562 * 7 6 5 9 9 N 1.40013 * 120.09157 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00356 * 325.80080 * 9 8 7 11 11 O 1.21740 * 120.00126 * 4.71905 * 10 9 8 12 12 C 1.46227 * 120.00238 * 184.71032 * 10 9 8 13 13 C 1.35035 * 119.99809 * 173.22588 * 12 10 9 14 14 C 1.46960 * 120.00216 * 348.44579 * 13 12 10 15 15 C 1.40035 * 120.07993 * 316.75036 * 14 13 12 16 16 C 1.37646 * 120.00041 * 180.02562 * 15 14 13 17 17 C 1.39051 * 120.16464 * 359.97438 * 16 15 14 18 18 O 1.35615 * 119.92524 * 179.97438 * 17 16 15 19 19 C 1.34758 * 116.99578 * 6.08027 * 18 17 16 20 20 H 1.08007 * 120.00224 * 5.40170 * 19 18 17 21 21 C 1.38703 * 119.99841 * 185.40340 * 19 18 17 22 22 N 1.31519 * 120.00393 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99835 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47250 * 90.00102 * 23 21 19 25 25 H 1.48501 * 109.46858 * 209.99744 * 23 21 19 26 26 H 1.48494 * 109.47262 * 329.99979 * 23 21 19 27 27 C 1.39627 * 120.15721 * 359.97438 * 17 16 15 28 28 O 1.35956 * 119.99924 * 179.97438 * 27 17 16 29 29 C 1.42899 * 116.99516 * 179.97438 * 28 27 17 30 30 C 1.38079 * 119.99788 * 359.76180 * 27 17 16 31 31 H 1.09000 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46713 * 299.99898 * 1 2 3 33 33 H 1.08989 * 109.47189 * 59.99877 * 1 2 3 34 34 H 1.07998 * 119.99256 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.90862 * 179.72773 * 5 4 3 36 36 H 1.08008 * 119.91672 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.01506 * 180.02562 * 7 6 5 38 38 H 0.97001 * 120.00013 * 145.80431 * 9 8 7 39 39 H 1.08001 * 119.99769 * 352.95475 * 12 10 9 40 40 H 1.08005 * 119.99957 * 168.44899 * 13 12 10 41 41 H 1.08002 * 119.99415 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.91457 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00497 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.47743 * 300.00132 * 29 28 27 45 45 H 1.09002 * 109.47281 * 60.00369 * 29 28 27 46 46 H 1.09002 * 109.46882 * 180.02562 * 29 28 27 47 47 H 1.07998 * 120.08082 * 180.27869 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2935 2.3745 0.0061 5 6 1.9226 3.6056 0.0004 6 6 3.3033 3.6808 -0.0055 7 6 4.0617 2.5257 -0.0050 8 6 3.4376 1.2865 0.0008 9 7 4.2038 0.1146 0.0007 10 6 5.3779 0.0770 -0.6600 11 8 5.8138 1.0855 -1.1843 12 6 6.1282 -1.1751 -0.7470 13 6 7.2321 -1.2482 -1.5212 14 6 7.5390 -0.1664 -2.4674 15 6 6.5208 0.3906 -3.2509 16 6 6.8102 1.4034 -4.1371 17 6 8.1123 1.8763 -4.2567 18 8 8.3921 2.8739 -5.1316 19 6 7.3470 3.4470 -5.7605 20 1 6.3379 3.1686 -5.4945 21 6 7.5673 4.3944 -6.7493 22 7 8.7960 4.7338 -7.0729 23 14 6.1186 5.1883 -7.6214 24 1 5.7090 6.4123 -6.8871 25 1 6.5129 5.5507 -9.0065 26 1 4.9825 4.2331 -7.6640 27 6 9.1326 1.3265 -3.4780 28 8 10.4047 1.7909 -3.5979 29 6 11.3980 1.1828 -2.7699 30 6 8.8487 0.3140 -2.5830 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 0.2149 2.3194 0.0105 35 1 1.3340 4.5111 0.0007 36 1 3.7902 4.6449 -0.0096 37 1 5.1400 2.5874 -0.0091 38 1 3.8896 -0.6704 0.4762 39 1 5.8019 -2.0400 -0.1886 40 1 7.8896 -2.1017 -1.4450 41 1 5.5086 0.0250 -3.1604 42 1 6.0238 1.8323 -4.7403 43 1 8.9501 5.3961 -7.7646 44 1 11.1328 1.3224 -1.7220 45 1 11.4533 0.1171 -2.9918 46 1 12.3657 1.6454 -2.9642 47 1 9.6360 -0.1091 -1.9769 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033477567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -37.306611 kcal Electronic energy + Delta-G solvation = -32977.406023 eV Core-core repulsion = 28479.674859 eV Total energy + Delta-G solvation = -4497.731164 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76115 -39.68355 -39.10149 -37.43852 -37.37569 -36.16926 -34.49837 -32.98036 -32.11481 -30.25708 -29.87855 -29.41601 -28.37290 -27.39960 -26.39550 -25.33893 -24.00754 -22.47409 -22.03223 -21.45124 -20.86866 -19.32676 -18.37783 -17.97200 -17.69803 -17.15529 -16.60785 -16.15536 -15.95930 -15.75220 -15.15368 -15.03767 -14.86763 -14.83439 -14.42143 -14.18812 -14.13360 -13.78541 -13.50532 -13.39731 -13.30396 -13.26943 -12.79561 -12.65185 -12.30713 -12.20248 -11.70603 -11.64567 -11.51236 -11.37656 -11.27014 -11.26279 -11.04758 -10.83727 -10.58911 -10.45526 -10.32206 -10.25083 -9.51316 -9.33867 -9.09885 -8.65805 -8.59442 -7.88553 -7.64877 -6.62650 -6.41882 -3.93586 1.03861 1.37315 1.42939 2.35461 2.67342 3.01481 3.16773 3.17560 3.22029 3.26779 3.49224 3.85856 3.99706 4.13513 4.64560 4.68658 4.81035 4.89284 4.95724 4.98525 5.13925 5.15716 5.18492 5.21377 5.27385 5.40864 5.53309 5.55347 5.60113 5.63958 5.75896 5.81936 5.87513 5.92620 6.08399 6.21437 6.26088 6.32589 6.47558 6.49451 6.57991 6.61902 6.73612 6.80054 7.05379 7.18716 7.27524 7.30960 7.47367 7.58994 7.73162 8.00440 8.29728 8.43800 9.02714 9.75167 10.75221 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.003198 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.966315 B = 8752.375668 C =11310.022747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.093 3.907 4 C -0.194 4.194 5 C -0.102 4.102 6 C -0.134 4.134 7 C -0.084 4.084 8 C 0.127 3.873 9 N -0.669 5.669 10 C 0.539 3.461 11 O -0.494 6.494 12 C -0.264 4.264 13 C 0.032 3.968 14 C -0.164 4.164 15 C -0.005 4.005 16 C -0.222 4.222 17 C 0.154 3.846 18 O -0.157 6.157 19 C -0.386 4.386 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.854 5.854 23 Si 0.940 3.060 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.267 1.267 27 C 0.038 3.962 28 O -0.305 6.305 29 C 0.033 3.967 30 C -0.133 4.133 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.408 0.592 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.271 0.729 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.089 0.911 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -10.790 16.303 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.046 3.954 4 C -0.213 4.213 5 C -0.120 4.120 6 C -0.153 4.153 7 C -0.104 4.104 8 C 0.032 3.968 9 N -0.314 5.314 10 C 0.330 3.670 11 O -0.369 6.369 12 C -0.286 4.286 13 C 0.012 3.988 14 C -0.165 4.165 15 C -0.024 4.024 16 C -0.242 4.242 17 C 0.098 3.902 18 O -0.059 6.059 19 C -0.462 4.462 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.487 5.487 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.007 4.007 28 O -0.219 6.219 29 C -0.063 4.063 30 C -0.152 4.152 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.243 0.757 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.482 -9.868 15.506 21.671 hybrid contribution -1.318 -0.133 0.104 1.329 sum -12.800 -10.001 15.610 22.528 Atomic orbital electron populations 1.23011 0.78456 1.03725 1.01289 1.86007 1.21286 1.26678 1.89355 1.18784 0.90562 0.84811 1.01224 1.20991 0.99604 0.91940 1.08749 1.20911 0.94740 0.96836 0.99558 1.21054 0.93616 0.98526 1.02092 1.21329 1.01866 0.89739 0.97496 1.17082 0.86565 0.87534 1.05595 1.43372 1.21205 1.13522 1.53328 1.18629 0.80148 0.90394 0.77820 1.90992 1.66387 1.35539 1.44030 1.22498 1.01044 0.96963 1.08052 1.22310 0.92448 0.95416 0.88618 1.18020 0.93208 1.02414 1.02846 1.20505 0.95944 0.93455 0.92505 1.20719 0.95875 1.02241 1.05334 1.18828 0.91053 0.89292 0.90998 1.84000 1.34798 1.40101 1.46960 1.21431 0.86356 1.20521 1.17930 0.88921 1.25320 0.98100 0.96749 0.96355 1.70051 1.19507 1.29937 1.29232 0.85721 0.79756 0.79507 0.78539 1.19778 1.20211 1.19107 1.17919 0.83625 0.99032 1.00120 1.86223 1.14712 1.59811 1.61188 1.22847 0.91417 0.97783 0.94281 1.20657 0.96217 0.98635 0.99711 0.88387 0.92816 0.92670 0.85463 0.85896 0.85492 0.83214 0.75660 0.85801 0.85852 0.88307 0.85167 0.91951 0.93767 0.93741 0.89266 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.46 10.05 -19.66 -0.20 -3.65 16 3 C 0.09 1.16 6.70 -39.06 -0.26 0.90 16 4 C -0.19 -2.13 9.04 -39.47 -0.36 -2.49 16 5 C -0.10 -1.15 10.04 -39.56 -0.40 -1.55 16 6 C -0.13 -1.75 10.04 -39.59 -0.40 -2.15 16 7 C -0.08 -1.26 8.70 -39.41 -0.34 -1.60 16 8 C 0.13 1.79 6.33 -83.52 -0.53 1.26 16 9 N -0.67 -8.61 5.18 -11.06 -0.06 -8.67 16 10 C 0.54 8.16 6.61 -13.05 -0.09 8.07 16 11 O -0.49 -9.46 9.56 5.15 0.05 -9.41 16 12 C -0.26 -3.32 9.90 -37.51 -0.37 -3.69 16 13 C 0.03 0.44 9.80 -37.19 -0.36 0.07 16 14 C -0.16 -3.02 4.54 -105.04 -0.48 -3.49 16 15 C -0.01 -0.11 6.59 -39.12 -0.26 -0.37 16 16 C -0.22 -5.26 9.10 -39.50 -0.36 -5.62 16 17 C 0.15 4.02 6.67 -38.76 -0.26 3.76 16 18 O -0.16 -4.73 9.52 -13.95 -0.13 -4.87 16 19 C -0.39 -11.24 9.43 30.90 0.29 -10.95 16 20 H 0.09 2.52 5.28 -52.48 -0.28 2.24 16 21 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 22 N -0.85 -25.70 13.67 55.48 0.76 -24.94 16 23 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 C 0.04 0.88 6.70 -39.12 -0.26 0.61 16 28 O -0.31 -6.97 10.28 -34.22 -0.35 -7.32 16 29 C 0.03 0.52 9.81 101.05 0.99 1.51 16 30 C -0.13 -2.56 8.77 -38.99 -0.34 -2.90 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 33 H 0.05 0.36 7.68 -51.94 -0.40 -0.04 16 34 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.15 2.52 6.15 -52.49 -0.32 2.20 16 38 H 0.41 4.09 8.54 -40.82 -0.35 3.74 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.10 1.91 7.00 -52.49 -0.37 1.54 16 42 H 0.13 3.10 5.70 -52.49 -0.30 2.80 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 45 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -36.10 395.94 -7.41 -43.51 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.54 Total: 9.71 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.89 Total: -16.40 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.70 Total: -33.61 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.63 Total: -25.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.10 -7.41 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033477567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.201 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds