Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29851 * 126.32462 * 2 1 4 4 O 1.41322 * 109.72991 * 180.02562 * 3 2 1 5 5 C 1.34876 * 109.40454 * 359.97438 * 4 3 2 6 6 N 1.32320 * 132.96535 * 179.97438 * 5 4 3 7 7 C 1.32389 * 121.95535 * 180.02562 * 6 5 4 8 8 C 1.48219 * 119.29693 * 180.02562 * 7 6 5 9 9 C 1.39435 * 120.10115 * 179.72487 * 8 7 6 10 10 C 1.37935 * 119.89771 * 179.78854 * 9 8 7 11 11 C 1.38592 * 120.10052 * 0.46184 * 10 9 8 12 12 F 1.35099 * 119.89792 * 179.76601 * 11 10 9 13 13 C 1.38580 * 120.20383 * 359.79009 * 11 10 9 14 14 C 1.37940 * 120.10407 * 359.97438 * 13 11 10 15 15 C 1.39762 * 121.40016 * 359.68098 * 7 6 5 16 16 C 1.39181 * 119.11301 * 0.60902 * 15 7 6 17 17 C 1.47897 * 121.04999 * 179.70015 * 16 15 7 18 18 O 1.21444 * 120.00191 * 172.70591 * 17 16 15 19 19 O 1.34702 * 119.99786 * 352.42273 * 17 16 15 20 20 C 1.45199 * 116.99699 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.47050 * 180.02562 * 20 19 17 22 22 C 1.50694 * 109.47356 * 179.97438 * 21 20 19 23 23 H 1.08010 * 119.99749 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00382 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99597 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00341 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47017 * 89.99984 * 26 24 22 28 28 H 1.48493 * 109.47312 * 209.99924 * 26 24 22 29 29 H 1.48500 * 109.47122 * 330.00364 * 26 24 22 30 30 C 1.40588 * 106.85455 * 0.02562 * 5 4 3 31 31 H 1.08997 * 109.47031 * 260.09347 * 1 2 3 32 32 H 1.09004 * 109.46779 * 20.09270 * 1 2 3 33 33 H 1.09000 * 109.47221 * 140.08802 * 1 2 3 34 34 H 1.07999 * 120.05585 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.95221 * 180.20941 * 10 9 8 36 36 H 1.07994 * 119.94984 * 179.97438 * 13 11 10 37 37 H 1.07997 * 120.05325 * 180.02562 * 14 13 11 38 38 H 1.08002 * 120.43930 * 180.33604 * 15 7 6 39 39 H 1.09001 * 109.47375 * 299.99731 * 20 19 17 40 40 H 1.08994 * 109.47695 * 60.00288 * 20 19 17 41 41 H 1.09001 * 109.46584 * 299.99936 * 21 20 19 42 42 H 1.09001 * 109.46572 * 59.99779 * 21 20 19 43 43 H 0.97001 * 119.99663 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0462 0.0000 4 8 3.6305 0.6426 -0.0006 5 6 3.6966 -0.7046 -0.0004 6 7 4.7080 -1.5579 -0.0012 7 6 4.5191 -2.8682 -0.0013 8 6 5.6951 -3.7705 -0.0016 9 6 5.5156 -5.1532 0.0041 10 6 6.6129 -5.9890 -0.0006 11 6 7.8924 -5.4563 -0.0014 12 9 8.9642 -6.2786 -0.0012 13 6 8.0756 -4.0826 -0.0018 14 6 6.9843 -3.2390 -0.0019 15 6 3.2346 -3.4188 0.0061 16 6 2.1331 -2.5680 0.0008 17 6 0.7548 -3.1044 0.0016 18 8 -0.1896 -2.3518 0.1304 19 8 0.5468 -4.4270 -0.1463 20 6 -0.8318 -4.8826 -0.1364 21 6 -0.8683 -6.4017 -0.3151 22 6 -2.2990 -6.8747 -0.3042 23 1 -3.1021 -6.1629 -0.1816 24 6 -2.5829 -8.2160 -0.4496 25 7 -1.6049 -9.0827 -0.5983 26 14 -4.3564 -8.8024 -0.4354 27 1 -4.8918 -8.7933 -1.8205 28 1 -4.4172 -10.1823 0.1097 29 1 -5.1701 -7.8975 0.4157 30 6 2.3728 -1.1777 -0.0003 31 1 -0.3633 -0.1768 1.0123 32 1 -0.3633 0.9652 -0.3531 33 1 -0.3634 -0.7882 -0.6594 34 1 4.5190 -5.5693 0.0083 35 1 6.4749 -7.0601 0.0004 36 1 9.0744 -3.6720 -0.0019 37 1 7.1280 -2.1687 -0.0027 38 1 3.0985 -4.4902 0.0114 39 1 -1.2953 -4.6177 0.8140 40 1 -1.3774 -4.4074 -0.9516 41 1 -0.4047 -6.6669 -1.2653 42 1 -0.3227 -6.8766 0.5004 43 1 -1.8047 -10.0264 -0.7010 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036735197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -17.437841 kcal Electronic energy + Delta-G solvation = -31667.160188 eV Core-core repulsion = 26981.404383 eV Total energy + Delta-G solvation = -4685.755806 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.27008 -42.43181 -40.35202 -39.94516 -38.37918 -36.65282 -34.95102 -33.57916 -32.98361 -32.52584 -31.51356 -30.40231 -29.27205 -28.81615 -26.21795 -24.83949 -24.62105 -23.15122 -22.68856 -21.63247 -21.12491 -20.11412 -18.55035 -18.27300 -18.09248 -17.72609 -17.02921 -16.84921 -16.35040 -16.20392 -16.19604 -15.94985 -15.62813 -15.04159 -14.78427 -14.52066 -14.11703 -14.06397 -13.90979 -13.74267 -13.53455 -13.43397 -13.26991 -13.16728 -12.78934 -12.51420 -12.46475 -12.40877 -11.78216 -11.43976 -11.42162 -11.40628 -11.23505 -10.91088 -10.80991 -10.56804 -10.09996 -10.05845 -9.86687 -9.76198 -9.66604 -9.54056 -9.44036 -8.65570 -8.55711 -6.21928 -4.26901 -0.52946 0.25413 0.84623 0.88132 1.55342 1.70501 2.32403 2.53787 3.01227 3.21083 3.27988 3.30368 3.32849 3.44441 3.68657 3.70948 3.84887 4.02726 4.24288 4.30374 4.44724 4.47038 4.54016 4.76141 4.84444 4.87883 5.10925 5.15353 5.23646 5.26765 5.39088 5.46368 5.51647 5.57508 5.69175 5.74853 5.78401 5.86386 5.87305 5.97428 6.05694 6.41138 6.42385 6.66643 6.72545 7.12567 7.37919 7.45231 7.68145 7.83281 8.09129 8.78210 9.38446 10.89374 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.006458 B = 0.002758 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4334.901498 B =10148.016369 C =14448.661930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.162 3.838 3 N -0.279 5.279 4 O -0.082 6.082 5 C 0.299 3.701 6 N -0.462 5.462 7 C 0.243 3.757 8 C -0.073 4.073 9 C -0.056 4.056 10 C -0.155 4.155 11 C 0.119 3.881 12 F -0.136 7.136 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.140 4.140 16 C 0.020 3.980 17 C 0.497 3.503 18 O -0.489 6.489 19 O -0.344 6.344 20 C 0.075 3.925 21 C 0.025 3.975 22 C -0.529 4.529 23 H 0.060 0.940 24 C 0.063 3.937 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.272 1.272 30 C -0.205 4.205 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 11.698 1.293 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.018 4.018 3 N -0.028 5.028 4 O -0.085 6.085 5 C 0.115 3.885 6 N -0.182 5.182 7 C 0.102 3.898 8 C -0.074 4.074 9 C -0.075 4.075 10 C -0.174 4.174 11 C 0.099 3.901 12 F -0.114 7.114 13 C -0.181 4.181 14 C -0.060 4.060 15 C -0.161 4.161 16 C 0.009 3.991 17 C 0.341 3.659 18 O -0.379 6.379 19 O -0.260 6.260 20 C 0.003 3.997 21 C -0.012 4.012 22 C -0.567 4.567 23 H 0.078 0.922 24 C -0.140 4.140 25 N -0.526 5.526 26 Si 0.727 3.273 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.197 1.197 30 C -0.212 4.212 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.762 13.446 1.307 21.529 hybrid contribution -1.612 -1.538 0.017 2.229 sum 15.150 11.908 1.323 19.315 Atomic orbital electron populations 1.21009 0.82832 1.04401 1.06230 1.24696 0.98992 0.88281 0.89849 1.80150 0.83802 1.17033 1.21781 1.89281 1.23701 1.14358 1.81159 1.20064 0.88548 0.86636 0.93268 1.66291 1.32969 1.01961 1.17016 1.19551 0.92065 0.87095 0.91120 1.18358 0.91200 0.91768 1.06101 1.21257 0.99904 0.91313 0.95027 1.21136 0.90465 1.01725 1.04045 1.17974 0.83579 0.88126 1.00396 1.91528 1.54336 1.72095 1.93475 1.21156 1.00798 0.91361 1.04800 1.21230 0.90138 1.01083 0.93508 1.22478 0.90585 1.02703 1.00293 1.19074 0.92445 0.90553 0.97027 1.20847 0.88389 0.82452 0.74235 1.90787 1.44247 1.57971 1.44875 1.86575 1.36258 1.22066 1.81073 1.23838 0.74938 0.99390 1.01487 1.19194 0.98142 0.85045 0.98849 1.20931 0.91262 0.92821 1.51703 0.92201 1.24968 0.97703 0.96629 0.94718 1.69959 1.31510 1.02570 1.48604 0.86471 0.84278 0.78139 0.78439 1.20431 1.21000 1.19696 1.21318 0.93672 0.94055 1.12110 0.88238 0.90679 0.85925 0.83442 0.83620 0.84108 0.83393 0.81054 0.91726 0.91754 0.95221 0.95211 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 8.52 36.00 0.31 -0.64 16 2 C 0.16 2.08 7.44 -80.25 -0.60 1.48 16 3 N -0.28 -3.85 12.82 34.83 0.45 -3.40 16 4 O -0.08 -1.18 12.06 7.54 0.09 -1.09 16 5 C 0.30 4.06 8.63 -16.46 -0.14 3.92 16 6 N -0.46 -5.75 9.37 -9.55 -0.09 -5.84 16 7 C 0.24 2.65 6.73 -82.96 -0.56 2.10 16 8 C -0.07 -0.67 5.88 -104.90 -0.62 -1.29 16 9 C -0.06 -0.45 9.40 -39.25 -0.37 -0.82 16 10 C -0.15 -1.23 10.01 -39.56 -0.40 -1.62 16 11 C 0.12 1.01 7.30 -39.32 -0.29 0.72 16 12 F -0.14 -1.27 17.26 2.25 0.04 -1.23 16 13 C -0.16 -1.24 10.01 -39.56 -0.40 -1.64 16 14 C -0.04 -0.34 9.56 -39.24 -0.38 -0.72 16 15 C -0.14 -1.55 9.03 -38.66 -0.35 -1.90 16 16 C 0.02 0.25 5.92 -104.51 -0.62 -0.36 16 17 C 0.50 7.33 7.90 34.69 0.27 7.61 16 18 O -0.49 -7.46 11.13 -19.22 -0.21 -7.67 16 19 O -0.34 -5.70 9.60 -40.50 -0.39 -6.09 16 20 C 0.08 1.44 5.41 37.16 0.20 1.64 16 21 C 0.02 0.58 5.35 -27.88 -0.15 0.43 16 22 C -0.53 -13.78 9.11 -34.44 -0.31 -14.10 16 23 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -24.82 13.29 55.43 0.74 -24.09 16 26 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 C -0.21 -2.74 6.16 -104.75 -0.64 -3.39 16 31 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.46 5.45 -52.47 -0.29 1.17 16 34 H 0.15 0.99 6.14 -52.49 -0.32 0.67 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 1.17 7.51 -52.49 -0.39 0.78 16 38 H 0.17 1.60 5.81 -52.49 -0.31 1.29 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -29.20 379.88 -8.02 -37.22 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.22 Total: -1.81 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -5.13 Total: -7.00 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 1.09 Total: -33.33 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.51 Total: -14.85 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.20 -8.02 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036735197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.784 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds