Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37524 * 125.60541 * 2 1 4 4 C 1.39227 * 133.13229 * 359.97438 * 3 2 1 5 5 C 1.37671 * 119.81246 * 180.34188 * 4 3 2 6 6 C 1.38923 * 120.64696 * 359.97438 * 5 4 3 7 7 C 1.36459 * 120.60770 * 0.02562 * 6 5 4 8 8 C 1.40087 * 119.83108 * 359.97438 * 7 6 5 9 9 C 1.41705 * 133.33048 * 179.97438 * 8 7 6 10 10 Cl 1.73600 * 126.14764 * 359.97438 * 9 8 7 11 11 C 1.36050 * 107.69724 * 180.02562 * 9 8 7 12 12 C 1.46830 * 125.46269 * 180.02562 * 11 9 8 13 13 O 1.21696 * 119.99854 * 335.14975 * 12 11 9 14 14 N 1.34776 * 120.00402 * 155.15095 * 12 11 9 15 15 C 1.39889 * 119.99813 * 178.65317 * 14 12 11 16 16 C 1.38956 * 120.00360 * 216.21038 * 15 14 12 17 17 C 1.37986 * 119.99566 * 180.02562 * 16 15 14 18 18 C 1.38911 * 120.00707 * 0.02562 * 17 16 15 19 19 O 1.35780 * 119.99605 * 179.97438 * 18 17 16 20 20 C 1.34815 * 117.00058 * 353.43934 * 19 18 17 21 21 H 1.07999 * 120.00049 * 354.61356 * 20 19 18 22 22 C 1.38626 * 119.99986 * 174.61914 * 20 19 18 23 23 N 1.31580 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47153 * 89.99519 * 24 22 20 26 26 H 1.48500 * 109.47560 * 209.99937 * 24 22 20 27 27 H 1.48503 * 109.46748 * 330.00116 * 24 22 20 28 28 C 1.38906 * 120.00937 * 0.27055 * 18 17 16 29 29 C 1.37999 * 120.00230 * 359.44805 * 28 18 17 30 30 H 1.09000 * 109.47330 * 275.58183 * 1 2 3 31 31 H 1.08997 * 109.47126 * 35.58562 * 1 2 3 32 32 H 1.09003 * 109.46969 * 155.58576 * 1 2 3 33 33 H 1.08004 * 120.09037 * 0.31292 * 4 3 2 34 34 H 1.08006 * 119.67904 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.69974 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.08425 * 180.02562 * 7 6 5 37 37 H 0.96993 * 119.99962 * 358.64576 * 14 12 11 38 38 H 1.07998 * 119.99636 * 0.02562 * 16 15 14 39 39 H 1.08008 * 119.99670 * 179.97438 * 17 16 15 40 40 H 0.97006 * 119.99755 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.00413 * 179.72667 * 28 18 17 42 42 H 1.08002 * 120.00056 * 180.27054 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2657 1.1181 0.0000 4 6 1.9938 2.4836 -0.0005 5 6 3.0316 3.3881 -0.0074 6 6 4.3507 2.9524 -0.0135 7 6 4.6421 1.6193 -0.0132 8 6 3.6037 0.6790 -0.0062 9 6 3.5748 -0.7377 -0.0044 10 17 4.9553 -1.7901 -0.0119 11 6 2.2705 -1.1247 0.0030 12 6 1.7940 -2.5136 0.0076 13 8 2.4989 -3.4001 -0.4376 14 7 0.5761 -2.8066 0.5049 15 6 0.1108 -4.1257 0.4835 16 6 -1.2353 -4.3840 0.2550 17 6 -1.6942 -5.6852 0.2345 18 6 -0.8107 -6.7368 0.4428 19 8 -1.2626 -8.0170 0.4230 20 6 -2.5960 -8.1941 0.3325 21 1 -3.2576 -7.3412 0.3672 22 6 -3.1179 -9.4710 0.1951 23 7 -2.3118 -10.5101 0.1525 24 14 -4.9655 -9.7165 0.0704 25 1 -5.3768 -9.6636 -1.3555 26 1 -5.3290 -11.0382 0.6417 27 1 -5.6595 -8.6428 0.8260 28 6 0.5338 -6.4785 0.6773 29 6 0.9942 -5.1777 0.6921 30 1 -0.3634 0.1000 1.0228 31 1 -0.3633 0.8357 -0.5980 32 1 -0.3633 -0.9358 -0.4248 33 1 0.9715 2.8322 0.0042 34 1 2.8182 4.4469 -0.0082 35 1 5.1530 3.6754 -0.0194 36 1 5.6706 1.2900 -0.0176 37 1 0.0224 -2.1030 0.8776 38 1 -1.9222 -3.5665 0.0936 39 1 -2.7405 -5.8860 0.0574 40 1 -2.6771 -11.4037 0.0567 41 1 1.2198 -7.2960 0.8435 42 1 2.0404 -4.9772 0.8701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040553433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = 38.408306 kcal Electronic energy + Delta-G solvation = -29189.419494 eV Core-core repulsion = 24934.421735 eV Total energy + Delta-G solvation = -4254.997760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 370.087 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09883 -40.06197 -38.71619 -37.38136 -36.72170 -36.45807 -34.29033 -33.16867 -32.25168 -30.81326 -30.29813 -29.84396 -27.95759 -26.76798 -25.49765 -24.31120 -22.37010 -22.08677 -21.86355 -20.82174 -20.26004 -18.27791 -17.85688 -17.46897 -17.40734 -16.70764 -16.26798 -15.97374 -15.26105 -14.95593 -14.62972 -14.59078 -14.36944 -14.33064 -14.11231 -13.84513 -13.66215 -13.57672 -13.48590 -12.99152 -12.82828 -12.54533 -12.26749 -12.24348 -11.89354 -11.64433 -11.62096 -11.46061 -11.44498 -11.09939 -10.98381 -10.74925 -10.49139 -9.99838 -9.89954 -9.76557 -9.33382 -8.78865 -8.66153 -8.28342 -8.02383 -7.03451 -6.49365 -4.07536 0.35662 1.18509 1.63389 1.74135 2.10146 2.18232 2.47311 2.97713 3.08274 3.10161 3.13384 3.15278 3.46688 3.92477 4.13040 4.21438 4.31484 4.51332 4.60511 4.64040 4.70906 4.91261 4.98571 5.05238 5.07921 5.12708 5.23667 5.25555 5.45008 5.56330 5.70294 5.95573 6.00702 6.04259 6.12195 6.12939 6.19250 6.23225 6.53189 6.70616 6.72951 6.75752 6.88305 7.06587 7.14315 7.33245 7.50089 7.68386 7.94406 8.11290 8.95542 9.65166 10.68275 Molecular weight = 370.09amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.001896 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.968563 B =14762.287411 C =15951.613901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.463 5.463 3 C 0.119 3.881 4 C -0.129 4.129 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.055 4.055 8 C -0.108 4.108 9 C -0.044 4.044 10 Cl -0.016 7.016 11 C 0.039 3.961 12 C 0.569 3.431 13 O -0.488 6.488 14 N -0.656 5.656 15 C 0.027 3.973 16 C -0.086 4.086 17 C -0.220 4.220 18 C 0.150 3.850 19 O -0.174 6.174 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.178 4.178 29 C -0.061 4.061 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.398 0.602 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.271 0.729 41 H 0.123 0.877 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 28.463 0.973 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.147 5.147 3 C 0.010 3.990 4 C -0.150 4.150 5 C -0.105 4.105 6 C -0.165 4.165 7 C -0.074 4.074 8 C -0.113 4.113 9 C -0.080 4.080 10 Cl 0.013 6.987 11 C -0.071 4.071 12 C 0.355 3.645 13 O -0.360 6.360 14 N -0.303 5.303 15 C -0.065 4.065 16 C -0.106 4.106 17 C -0.239 4.239 18 C 0.096 3.904 19 O -0.077 6.077 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.493 5.493 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.198 4.198 29 C -0.081 4.081 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.499 27.157 0.633 28.181 hybrid contribution -1.293 0.234 0.043 1.315 sum 6.206 27.391 0.676 28.093 Atomic orbital electron populations 1.22327 0.75884 1.05649 1.04115 1.43971 1.05964 1.03381 1.61414 1.18217 0.88883 0.88468 1.03388 1.20051 0.99987 0.88598 1.06330 1.20918 0.92126 0.99135 0.98310 1.20658 0.96702 0.95335 1.03848 1.20416 0.98016 0.91997 0.96961 1.17883 0.93207 0.91124 1.09084 1.19946 0.87886 0.90073 1.10081 1.98373 1.39068 1.64483 1.96784 1.19960 0.89494 0.86983 1.10689 1.17041 0.82350 0.85861 0.79274 1.90928 1.54594 1.45892 1.44613 1.43373 1.17513 1.09215 1.60184 1.17184 0.93437 0.82347 1.13504 1.20445 0.93193 0.96480 1.00478 1.20965 1.00896 0.91548 1.10535 1.19444 0.92625 0.85623 0.92754 1.84011 1.25405 1.19919 1.78315 1.21310 0.78929 0.94227 1.52356 0.89063 1.25309 1.00510 0.94305 0.96446 1.70051 1.35219 0.98833 1.45245 0.85706 0.80494 0.78376 0.78813 1.19863 1.20216 1.19197 1.20150 0.93630 0.96287 1.09697 1.20682 0.99066 0.90826 0.97538 0.89901 0.88812 0.88710 0.85712 0.85313 0.85552 0.85418 0.76517 0.87264 0.85007 0.91924 0.85949 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 9.53 59.85 0.57 0.94 16 2 N -0.46 -4.58 3.23 -117.67 -0.38 -4.96 16 3 C 0.12 1.18 6.81 -83.97 -0.57 0.61 16 4 C -0.13 -0.95 10.00 -39.42 -0.39 -1.35 16 5 C -0.09 -0.55 10.01 -39.53 -0.40 -0.95 16 6 C -0.15 -1.03 9.97 -39.97 -0.40 -1.43 16 7 C -0.06 -0.50 10.06 -39.53 -0.40 -0.90 16 8 C -0.11 -1.21 6.16 -106.90 -0.66 -1.87 16 9 C -0.04 -0.58 6.70 -39.04 -0.26 -0.84 16 10 Cl -0.02 -0.22 28.02 -51.86 -1.45 -1.67 16 11 C 0.04 0.51 6.73 -82.24 -0.55 -0.05 16 12 C 0.57 8.60 7.30 -12.79 -0.09 8.51 16 13 O -0.49 -9.02 13.42 5.19 0.07 -8.95 16 14 N -0.66 -8.96 4.57 -10.96 -0.05 -9.01 16 15 C 0.03 0.47 6.26 -83.65 -0.52 -0.06 16 16 C -0.09 -1.47 9.96 -39.41 -0.39 -1.86 16 17 C -0.22 -4.55 9.12 -39.42 -0.36 -4.91 16 18 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 19 O -0.17 -4.88 9.75 0.00 0.00 -4.88 16 20 C -0.39 -10.71 9.43 30.88 0.29 -10.42 16 21 H 0.09 2.27 5.31 -52.49 -0.28 1.99 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 24 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 C -0.18 -3.85 9.98 -39.42 -0.39 -4.24 16 29 C -0.06 -1.19 8.66 -39.41 -0.34 -1.53 16 30 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.61 6.16 -51.93 -0.32 0.29 16 33 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.40 4.01 6.03 -40.82 -0.25 3.76 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.13 2.69 5.72 -52.48 -0.30 2.39 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 42 H 0.13 2.42 6.41 -52.49 -0.34 2.09 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -33.65 374.91 -9.66 -43.30 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.00 Total: 5.70 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -5.23 Total: -16.07 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.33 Total: -38.13 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.07 Total: -13.83 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.45 Total: -1.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.65 -9.66 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040553433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.712 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds