Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47282 * 269.99726 * 3 2 1 5 5 H 1.48503 * 109.47427 * 29.99935 * 3 2 1 6 6 H 1.48502 * 109.47168 * 149.99673 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00195 * 89.99898 * 10 9 7 12 12 O 1.21282 * 120.00431 * 185.18900 * 11 10 9 13 13 C 1.50704 * 119.99779 * 5.19438 * 11 10 9 14 14 N 1.46905 * 109.47011 * 180.02562 * 13 11 10 15 15 C 1.47843 * 110.99878 * 57.27399 * 14 13 11 16 16 C 1.54907 * 104.79525 * 146.36488 * 15 14 13 17 17 C 1.55137 * 101.65059 * 322.92602 * 16 15 14 18 18 C 1.47442 * 110.99526 * 178.11442 * 14 13 11 19 19 H 1.09004 * 109.88739 * 117.17679 * 18 14 13 20 20 C 1.50693 * 109.89502 * 356.14813 * 18 14 13 21 21 C 1.38424 * 122.54381 * 110.50568 * 20 18 14 22 22 C 1.33385 * 114.92534 * 179.97438 * 21 20 18 23 23 S 1.75879 * 109.59370 * 0.02562 * 22 21 20 24 24 C 1.33390 * 122.54032 * 290.49448 * 20 18 14 25 25 C 1.39931 * 120.00192 * 269.99566 * 10 9 7 26 26 C 1.38864 * 120.06910 * 107.98982 * 25 10 9 27 27 C 1.38114 * 119.92872 * 179.79379 * 26 25 10 28 28 C 1.38285 * 120.06920 * 0.48698 * 27 26 25 29 29 C 1.38287 * 120.13898 * 359.74428 * 28 27 26 30 30 C 1.38112 * 120.07195 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99979 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47309 * 59.99790 * 9 7 2 33 33 H 1.09003 * 109.46795 * 299.99210 * 9 7 2 34 34 H 1.08999 * 109.47222 * 60.00142 * 13 11 10 35 35 H 1.08998 * 109.46761 * 299.99701 * 13 11 10 36 36 H 1.09004 * 110.37362 * 265.19175 * 15 14 13 37 37 H 1.08996 * 110.37811 * 27.53074 * 15 14 13 38 38 H 1.08995 * 110.99060 * 81.02248 * 16 15 14 39 39 H 1.08998 * 110.98576 * 204.79688 * 16 15 14 40 40 H 1.08998 * 110.70716 * 277.27391 * 17 16 15 41 41 H 1.09001 * 110.70692 * 154.03791 * 17 16 15 42 42 H 1.08007 * 122.53553 * 359.96670 * 21 20 18 43 43 H 1.08002 * 125.20102 * 180.02562 * 22 21 20 44 44 H 1.08004 * 125.20092 * 0.04739 * 24 20 18 45 45 H 1.08000 * 120.03755 * 0.02562 * 26 25 10 46 46 H 1.07999 * 119.96875 * 180.23365 * 27 26 25 47 47 H 1.07999 * 119.93170 * 179.76559 * 28 27 26 48 48 H 1.08001 * 119.96429 * 180.02562 * 29 28 27 49 49 H 1.07995 * 120.03464 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6409 -4.1248 1.1677 12 8 3.4989 -4.9821 1.1699 13 6 2.0645 -3.6324 2.4702 14 7 2.7032 -4.3410 3.5874 15 6 4.1704 -4.1615 3.5591 16 6 4.5947 -4.1378 5.0488 17 6 3.4130 -3.3714 5.6990 18 6 2.1952 -3.8524 4.8824 19 1 1.6874 -4.6598 5.4100 20 6 1.2421 -2.7065 4.6600 21 6 -0.1182 -2.8135 4.8929 22 6 -0.8195 -1.7060 4.6464 23 16 0.2609 -0.4360 4.0870 24 6 1.6454 -1.5121 4.2240 25 6 2.6576 -4.1445 -1.2113 26 6 3.9613 -3.9105 -1.6283 27 6 4.4083 -4.4404 -2.8229 28 6 3.5560 -5.1949 -3.6082 29 6 2.2557 -5.4257 -3.1979 30 6 1.8041 -4.9025 -2.0022 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 0.9909 -3.8203 2.4865 35 1 2.2476 -2.5623 2.5670 36 1 4.6449 -4.9958 3.0426 37 1 4.4282 -3.2190 3.0761 38 1 4.6719 -5.1488 5.4488 39 1 5.5314 -3.5959 5.1793 40 1 3.5470 -2.2949 5.5933 41 1 3.3062 -3.6463 6.7484 42 1 -0.5770 -3.7248 5.2473 43 1 -1.8875 -1.6047 4.7712 44 1 2.6659 -1.2467 3.9903 45 1 4.6262 -3.3178 -1.0175 46 1 5.4232 -4.2619 -3.1460 47 1 3.9067 -5.6050 -4.5437 48 1 1.5927 -6.0157 -3.8132 49 1 0.7884 -5.0828 -1.6826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046089324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = 53.586470 kcal Electronic energy + Delta-G solvation = -32575.523727 eV Core-core repulsion = 28594.894037 eV Total energy + Delta-G solvation = -3980.629690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.39344 -39.37558 -37.74711 -36.42536 -34.92795 -32.66263 -31.98117 -30.48696 -30.13774 -29.61581 -27.79422 -27.15216 -26.04566 -23.75494 -23.10615 -22.18841 -21.91655 -21.00383 -20.34461 -18.88713 -18.24138 -17.47133 -16.89256 -16.58589 -16.12088 -15.71890 -15.35627 -15.19407 -14.93490 -14.41778 -14.29374 -14.10719 -13.82949 -13.44343 -13.06848 -12.99017 -12.90517 -12.79481 -12.46338 -12.34985 -12.11010 -12.01175 -11.84496 -11.66272 -11.56709 -11.31257 -11.15125 -11.03051 -10.93179 -10.87988 -10.78554 -10.70243 -10.56657 -10.30512 -10.23764 -9.82160 -9.07459 -8.58628 -8.48811 -8.47669 -8.38461 -8.12752 -7.79875 -7.66827 -6.20200 -4.26661 1.33777 1.77668 1.85468 2.05310 2.38949 2.92310 3.17575 3.25477 3.26371 3.37269 3.69872 4.21601 4.31114 4.48724 4.81877 4.87704 4.94392 5.13660 5.31484 5.32141 5.33440 5.35276 5.43534 5.50313 5.58829 5.62603 5.68802 5.83389 5.84577 5.90791 5.92882 5.99795 6.02783 6.06794 6.09100 6.16144 6.30038 6.39412 6.43585 6.49618 6.67880 6.69103 6.75070 6.86647 6.89707 6.97821 7.13306 7.26176 7.28781 7.29696 7.68350 7.78124 8.01495 8.22396 8.75161 9.01119 9.39942 10.86339 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004715 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.260256 B = 5937.098821 C = 8043.258085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.076 3.924 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.243 3.757 10 N -0.566 5.566 11 C 0.522 3.478 12 O -0.547 6.547 13 C 0.036 3.964 14 N -0.502 5.502 15 C 0.048 3.952 16 C -0.132 4.132 17 C -0.134 4.134 18 C 0.133 3.867 19 H 0.092 0.908 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.220 4.220 23 S 0.139 5.861 24 C -0.197 4.197 25 C 0.177 3.823 26 C -0.102 4.102 27 C -0.116 4.116 28 C -0.135 4.135 29 C -0.116 4.116 30 C -0.124 4.124 31 H 0.265 0.735 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -5.253 7.163 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.128 4.128 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.076 0.924 9 C 0.124 3.876 10 N -0.295 5.295 11 C 0.311 3.689 12 O -0.425 6.425 13 C -0.094 4.094 14 N -0.226 5.226 15 C -0.080 4.080 16 C -0.170 4.170 17 C -0.173 4.173 18 C 0.023 3.977 19 H 0.110 0.890 20 C -0.141 4.141 21 C -0.160 4.160 22 C -0.356 4.356 23 S 0.405 5.595 24 C -0.335 4.335 25 C 0.086 3.914 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.153 4.153 29 C -0.134 4.134 30 C -0.144 4.144 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.896 -4.542 6.681 8.298 hybrid contribution 0.564 0.672 0.179 0.896 sum 2.460 -3.870 6.860 8.251 Atomic orbital electron populations 1.69900 1.05703 1.27121 1.49008 1.24791 0.94735 0.98643 0.94678 0.86726 0.80026 0.83687 0.78532 1.20432 1.20776 1.19897 1.21347 0.93360 0.90262 1.52687 0.92426 1.19518 0.87215 0.82057 0.98806 1.45929 1.46225 1.34889 1.02439 1.20544 0.81900 0.81211 0.85276 1.90597 1.31842 1.32687 1.87421 1.22446 0.99771 0.99050 0.88133 1.63808 1.04833 1.53421 1.00521 1.23114 0.87948 1.01509 0.95397 1.22766 0.97645 1.00643 0.95988 1.22919 0.94360 1.00459 0.99522 1.21181 0.93102 0.92761 0.90624 0.89025 1.19085 0.94909 0.95326 1.04809 1.19909 0.92797 0.99053 1.04221 1.25565 1.03418 0.97847 1.08790 1.84567 0.97505 1.14640 1.62744 1.25417 1.02747 0.97433 1.07853 1.17554 0.92592 0.94016 0.87241 1.21258 0.95788 0.99025 0.96086 1.20947 0.99409 0.98381 0.94716 1.21006 0.94170 1.00347 0.99781 1.20893 0.95948 1.00399 0.96181 1.21234 0.99965 0.97717 0.95435 0.92540 0.94603 0.94080 0.88359 0.89142 0.88592 0.94199 0.90808 0.91177 0.91098 0.90856 0.84753 0.82363 0.82526 0.86402 0.86428 0.86590 0.86320 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.99 13.29 55.43 0.74 -22.25 16 2 C 0.08 1.92 5.46 -17.82 -0.10 1.82 16 3 Si 0.88 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.63 9.39 -34.44 -0.32 -13.96 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.24 5.73 4.95 -5.19 -0.03 5.70 16 10 N -0.57 -12.30 2.49 -114.74 -0.29 -12.59 16 11 C 0.52 11.11 7.26 -10.98 -0.08 11.03 16 12 O -0.55 -12.41 13.87 5.56 0.08 -12.34 16 13 C 0.04 0.69 2.63 -4.97 -0.01 0.67 16 14 N -0.50 -8.37 5.08 -226.16 -1.15 -9.52 16 15 C 0.05 0.77 5.24 -2.30 -0.01 0.75 16 16 C -0.13 -1.63 7.08 -24.59 -0.17 -1.80 16 17 C -0.13 -1.60 6.39 -24.91 -0.16 -1.76 16 18 C 0.13 1.86 3.73 -67.88 -0.25 1.60 16 19 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 20 C -0.13 -1.86 3.14 -106.25 -0.33 -2.20 16 21 C -0.13 -1.78 9.89 -41.21 -0.41 -2.19 16 22 C -0.22 -3.11 11.23 29.04 0.33 -2.78 16 23 S 0.14 2.24 23.34 -107.50 -2.51 -0.27 16 24 C -0.20 -3.12 7.42 29.04 0.22 -2.90 16 25 C 0.18 3.66 4.68 -83.69 -0.39 3.27 16 26 C -0.10 -1.98 9.57 -39.40 -0.38 -2.36 16 27 C -0.12 -1.88 10.04 -39.61 -0.40 -2.28 16 28 C -0.13 -2.00 10.04 -39.55 -0.40 -2.40 16 29 C -0.12 -1.80 10.04 -39.61 -0.40 -2.20 16 30 C -0.12 -2.28 9.84 -39.39 -0.39 -2.66 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.04 0.91 7.97 -51.93 -0.41 0.49 16 33 H 0.04 0.99 6.45 -51.93 -0.33 0.66 16 34 H 0.10 1.90 7.03 -51.93 -0.36 1.54 16 35 H 0.09 1.81 4.85 -51.93 -0.25 1.55 16 36 H 0.10 1.71 6.89 -51.93 -0.36 1.35 16 37 H 0.04 0.69 7.76 -51.93 -0.40 0.29 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.87 6.54 -51.93 -0.34 0.53 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.16 2.50 7.23 -52.48 -0.38 2.12 16 45 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 46 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 48 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 49 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -28.19 406.67 -12.75 -40.93 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.04 Total: 9.46 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.69 Total: -14.64 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.70 Total: -44.36 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.51 Total: -0.27 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.19 -12.75 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046089324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.518 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds