Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38754 * 120.02856 * 2 1 4 4 O 1.35904 * 120.05451 * 0.02562 * 3 2 1 5 5 C 1.42897 * 116.99711 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46809 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00189 * 5.01843 * 6 5 4 8 8 N 1.34781 * 119.99974 * 185.29916 * 6 5 4 9 9 C 1.46501 * 120.00193 * 184.89121 * 8 6 5 10 10 C 1.50693 * 109.47285 * 89.99726 * 9 8 6 11 11 H 1.08004 * 120.00021 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00049 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00283 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99958 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47363 * 90.00374 * 14 12 10 16 16 H 1.48502 * 109.47145 * 210.00008 * 14 12 10 17 17 H 1.48495 * 109.47304 * 330.00182 * 14 12 10 18 18 C 1.39931 * 119.99811 * 4.89017 * 8 6 5 19 19 C 1.38873 * 120.06808 * 291.55720 * 18 8 6 20 20 C 1.38116 * 119.92514 * 179.79389 * 19 18 8 21 21 C 1.38273 * 120.07242 * 0.48555 * 20 19 18 22 22 C 1.38286 * 120.14228 * 359.74386 * 21 20 19 23 23 C 1.38114 * 120.06845 * 0.02562 * 22 21 20 24 24 C 1.38707 * 119.88674 * 180.28510 * 3 2 1 25 25 C 1.38167 * 119.94588 * 359.46286 * 24 3 2 26 26 C 1.38244 * 120.05314 * 0.53933 * 25 24 3 27 27 C 1.38125 * 120.02858 * 180.02562 * 2 1 3 28 28 N 1.48009 * 119.97158 * 359.97438 * 27 2 1 29 29 O 1.21798 * 119.99832 * 185.78576 * 28 27 2 30 30 O 1.21801 * 119.99991 * 5.78195 * 28 27 2 31 31 H 1.08988 * 109.47534 * 96.82466 * 1 2 3 32 32 H 1.09001 * 109.46448 * 216.83199 * 1 2 3 33 33 H 1.08998 * 109.46682 * 336.81959 * 1 2 3 34 34 H 1.08997 * 109.47614 * 60.00077 * 5 4 3 35 35 H 1.09003 * 109.46838 * 299.99696 * 5 4 3 36 36 H 1.09001 * 109.46913 * 210.00016 * 9 8 6 37 37 H 1.09007 * 109.46782 * 329.99977 * 9 8 6 38 38 H 0.96994 * 120.00294 * 179.97438 * 13 12 10 39 39 H 1.08001 * 120.03463 * 0.02562 * 19 18 8 40 40 H 1.07997 * 119.95917 * 180.23054 * 20 19 18 41 41 H 1.07993 * 119.93281 * 179.72672 * 21 20 19 42 42 H 1.07999 * 119.96688 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.03253 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.02617 * 179.74652 * 24 3 2 45 45 H 1.07999 * 119.97188 * 180.27882 * 25 24 3 46 46 H 1.08003 * 119.94197 * 179.76314 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 0.0005 5 6 2.3037 3.5765 -0.0001 6 6 1.3874 4.7730 0.0013 7 8 0.1880 4.6182 0.0945 8 7 1.9003 6.0147 -0.1068 9 6 1.0219 7.1821 0.0020 10 6 0.9377 7.6149 1.4430 11 1 1.4842 7.0747 2.2019 12 6 0.1630 8.7005 1.7926 13 7 -0.5029 9.3581 0.8686 14 14 0.0593 9.2374 3.5787 15 1 1.1311 10.2256 3.8617 16 1 -1.2657 9.8580 3.8329 17 1 0.2299 8.0556 4.4616 18 6 3.2718 6.1888 -0.3229 19 6 4.1804 5.8629 0.6755 20 6 5.5337 6.0319 0.4575 21 6 5.9836 6.5344 -0.7496 22 6 5.0811 6.8643 -1.7441 23 6 3.7268 6.6932 -1.5341 24 6 3.5885 1.1979 -0.0060 25 6 4.2752 -0.0010 -0.0007 26 6 3.5811 -1.1965 -0.0007 27 6 2.1983 -1.1959 -0.0005 28 7 1.4582 -2.4777 -0.0005 29 8 2.0626 -3.5298 0.1053 30 8 0.2448 -2.4803 -0.1063 31 1 -0.3634 -0.1221 -1.0202 32 1 -0.3632 -0.8226 0.6161 33 1 -0.3632 0.9447 0.4045 34 1 2.9318 3.6005 -0.8905 35 1 2.9332 3.6004 0.8895 36 1 1.4247 7.9971 -0.5993 37 1 0.0263 6.9225 -0.3582 38 1 -1.0482 10.1216 1.1146 39 1 3.8293 5.4742 1.6200 40 1 6.2410 5.7751 1.2322 41 1 7.0420 6.6697 -0.9160 42 1 5.4357 7.2562 -2.6860 43 1 3.0225 6.9515 -2.3110 44 1 4.1312 2.1316 -0.0101 45 1 5.3552 -0.0041 -0.0008 46 1 4.1197 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048355248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -5.595633 kcal Electronic energy + Delta-G solvation = -32950.155745 eV Core-core repulsion = 28388.373761 eV Total energy + Delta-G solvation = -4561.781984 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45000 -40.88817 -39.99535 -38.49799 -37.60027 -36.83905 -35.07418 -33.45996 -32.85811 -31.45658 -30.94935 -29.67678 -29.10790 -27.88750 -26.89303 -25.99135 -23.40459 -22.81183 -22.46718 -22.40155 -22.10958 -19.61558 -19.30829 -18.80471 -17.80288 -17.75598 -17.31926 -16.77963 -16.44573 -16.36954 -16.28413 -15.89648 -15.47568 -15.07636 -14.57792 -14.40559 -14.19875 -14.10723 -13.62682 -13.37302 -13.33569 -13.10224 -12.99310 -12.60516 -12.58403 -12.47846 -12.33871 -11.83723 -11.63989 -11.56924 -11.51620 -11.35207 -11.28858 -11.15523 -11.00002 -10.76293 -10.74648 -10.30490 -9.90486 -9.82923 -9.61358 -8.92358 -8.79225 -8.75492 -8.56717 -7.93955 -6.18836 -4.24552 -0.40725 0.65315 1.11093 1.13892 1.31772 1.41328 2.47660 2.89050 2.93235 3.21823 3.28998 3.32240 3.64770 3.78944 4.02560 4.21298 4.28761 4.33389 4.38942 4.56530 4.62284 4.80753 4.86206 4.96741 4.97623 5.03145 5.15115 5.16786 5.22288 5.46111 5.46182 5.54208 5.59798 5.60188 5.70887 5.80022 5.82154 5.97523 6.03998 6.35215 6.38038 6.51643 6.56452 6.68520 6.84826 6.99133 7.13757 7.26280 7.48779 7.75361 8.01463 8.03961 8.55685 8.78687 9.40707 10.89594 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.002597 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.109439 B =10779.913729 C =12624.896926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.044 4.044 3 C 0.135 3.865 4 O -0.274 6.274 5 C 0.038 3.962 6 C 0.518 3.482 7 O -0.501 6.501 8 N -0.555 5.555 9 C 0.249 3.751 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.153 3.847 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.108 4.108 23 C -0.121 4.121 24 C -0.158 4.158 25 C -0.082 4.082 26 C -0.095 4.095 27 C -0.014 4.014 28 N 0.033 4.967 29 O -0.167 6.167 30 O -0.151 6.151 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.266 0.734 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.485 -14.463 -4.569 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.046 4.046 3 C 0.088 3.912 4 O -0.185 6.185 5 C -0.040 4.040 6 C 0.303 3.697 7 O -0.374 6.374 8 N -0.285 5.285 9 C 0.132 3.868 10 C -0.571 4.571 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.061 3.939 19 C -0.150 4.150 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.177 4.177 25 C -0.101 4.101 26 C -0.115 4.115 27 C -0.098 4.098 28 N 0.550 4.450 29 O -0.380 6.380 30 O -0.367 6.367 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.753 -13.731 -4.540 20.659 hybrid contribution 0.157 0.411 1.058 1.146 sum 14.910 -13.319 -3.483 20.294 Atomic orbital electron populations 1.21190 0.87530 1.05282 1.04442 1.19040 0.98725 0.88164 0.98698 1.18525 0.90041 0.86020 0.96636 1.86211 1.33960 1.10907 1.87422 1.22858 0.94339 0.83107 1.03739 1.19575 0.88614 0.83162 0.78321 1.90755 1.14858 1.84795 1.46983 1.45885 1.05805 1.07175 1.69592 1.19525 0.89512 0.79851 0.97889 1.21322 1.29412 1.13620 0.92736 0.92342 1.24906 0.94922 0.96078 0.97924 1.69913 1.29836 1.20226 1.32998 0.86464 0.77561 0.78783 0.84468 1.20527 1.20907 1.19814 1.17812 0.84046 0.98969 0.93043 1.21413 0.93168 1.02250 0.98139 1.20994 0.94898 0.99603 0.97296 1.21109 0.99498 1.00344 0.93991 1.21017 0.92610 0.99662 0.99339 1.21349 0.96009 1.00241 0.96492 1.21785 0.92936 1.00690 1.02304 1.20922 1.00838 0.90108 0.98250 1.20908 0.90705 1.00856 0.99011 1.20574 0.92081 0.82918 1.14185 1.43479 1.01167 1.02573 0.97753 1.94528 1.70150 1.19762 1.53607 1.94506 0.95967 1.93770 1.52425 0.89422 0.88558 0.89541 0.89116 0.88733 0.94303 0.93044 0.92472 0.85799 0.85935 0.86181 0.85865 0.85533 0.83379 0.83234 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.54 36.01 0.31 -1.27 16 2 C -0.04 -0.54 5.89 -104.47 -0.62 -1.15 16 3 C 0.14 1.60 6.66 -39.22 -0.26 1.34 16 4 O -0.27 -3.99 8.61 -39.30 -0.34 -4.33 16 5 C 0.04 0.52 3.76 36.01 0.14 0.65 16 6 C 0.52 10.01 7.65 -10.98 -0.08 9.93 16 7 O -0.50 -11.97 16.06 -14.31 -0.23 -12.20 16 8 N -0.55 -10.91 2.50 -114.73 -0.29 -11.20 16 9 C 0.25 6.15 5.15 -5.20 -0.03 6.13 16 10 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 11 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 14 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.15 2.42 4.39 -83.69 -0.37 2.05 16 19 C -0.13 -1.75 8.49 -39.39 -0.33 -2.08 16 20 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 21 C -0.13 -1.31 10.04 -39.55 -0.40 -1.71 16 22 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 23 C -0.12 -1.68 9.70 -39.39 -0.38 -2.07 16 24 C -0.16 -1.37 9.04 -39.43 -0.36 -1.72 16 25 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 26 C -0.10 -0.83 9.55 -39.56 -0.38 -1.20 16 27 C -0.01 -0.16 6.83 -79.98 -0.55 -0.71 16 28 N 0.03 0.42 4.45 33.95 0.15 0.58 16 29 O -0.17 -2.19 18.46 -29.46 -0.54 -2.73 16 30 O -0.15 -2.04 15.35 -29.46 -0.45 -2.50 16 31 H 0.09 1.02 8.14 -51.94 -0.42 0.60 16 32 H 0.10 1.15 5.84 -51.93 -0.30 0.85 16 33 H 0.09 1.16 7.33 -51.93 -0.38 0.78 16 34 H 0.09 1.00 7.38 -51.93 -0.38 0.61 16 35 H 0.09 1.07 6.51 -51.93 -0.34 0.74 16 36 H 0.04 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.05 1.43 7.36 -51.92 -0.38 1.05 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 1.64 7.64 -52.49 -0.40 1.24 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.15 0.98 6.30 -52.49 -0.33 0.65 16 45 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.15 1.05 7.62 -52.48 -0.40 0.65 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -33.05 398.64 -10.31 -43.36 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.41 Total: 0.65 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -4.92 Total: -8.97 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.60 Total: -35.47 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.56 Total: -21.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.05 -10.31 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048355248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.762 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds