Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29035 * 124.91468 * 2 1 4 4 C 1.31786 * 117.12066 * 179.97438 * 3 2 1 5 5 C 1.33635 * 114.50098 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.03577 * 179.97438 * 5 4 3 7 7 N 1.46894 * 109.47335 * 89.99575 * 6 5 4 8 8 C 1.46903 * 111.00031 * 293.95311 * 7 6 5 9 9 C 1.46907 * 111.00286 * 169.99965 * 7 6 5 10 10 C 1.50698 * 109.47234 * 189.99992 * 9 7 6 11 11 N 1.29828 * 118.34810 * 359.73312 * 10 9 7 12 12 C 1.35641 * 121.62174 * 179.76499 * 11 10 9 13 13 C 1.39631 * 121.62292 * 180.27619 * 12 11 10 14 14 C 1.37710 * 119.69254 * 180.19541 * 13 12 11 15 15 C 1.38866 * 120.82819 * 0.02562 * 14 13 12 16 16 C 1.37792 * 120.57289 * 0.02562 * 15 14 13 17 17 C 1.39368 * 119.51532 * 359.97438 * 16 15 14 18 18 C 1.46967 * 121.90787 * 180.02562 * 17 16 15 19 19 O 1.21720 * 121.28491 * 359.97438 * 18 17 16 20 20 N 1.35334 * 117.42856 * 179.97438 * 18 17 16 21 21 C 1.37108 * 119.71785 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99680 * 138.86504 * 21 20 18 23 23 C 1.39071 * 120.00051 * 318.86683 * 21 20 18 24 24 N 1.31253 * 119.99933 * 340.41233 * 23 21 20 25 25 Si 1.86804 * 119.99979 * 160.40952 * 23 21 20 26 26 H 1.48496 * 109.47142 * 90.00177 * 25 23 21 27 27 H 1.48504 * 109.46969 * 210.00512 * 25 23 21 28 28 H 1.48496 * 109.46983 * 329.99950 * 25 23 21 29 29 S 1.70977 * 124.91723 * 180.31398 * 2 1 3 30 30 H 1.09002 * 109.47073 * 89.97173 * 1 2 3 31 31 H 1.08997 * 109.47317 * 209.97315 * 1 2 3 32 32 H 1.08997 * 109.47239 * 329.97423 * 1 2 3 33 33 H 1.07996 * 122.74378 * 179.97438 * 4 3 2 34 34 H 1.09009 * 109.47065 * 329.99461 * 6 5 4 35 35 H 1.08999 * 109.47307 * 210.00109 * 6 5 4 36 36 H 1.08998 * 109.46921 * 60.00295 * 8 7 6 37 37 H 1.09005 * 109.47113 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47535 * 299.99836 * 8 7 6 39 39 H 1.08995 * 109.46742 * 310.00400 * 9 7 6 40 40 H 1.09000 * 109.46576 * 70.00139 * 9 7 6 41 41 H 1.08006 * 120.15130 * 0.17710 * 13 12 11 42 42 H 1.08001 * 119.58584 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.71496 * 179.97438 * 15 14 13 44 44 H 1.07996 * 120.24602 * 180.02562 * 16 15 14 45 45 H 0.97008 * 120.00102 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3574 -0.8994 0.0004 7 7 5.8196 -1.0614 1.3853 8 6 5.9047 0.2369 2.0673 9 6 7.1080 -1.7657 1.4315 10 6 7.4304 -2.1303 2.8577 11 7 6.5884 -1.7915 3.7860 12 6 6.8099 -2.0902 5.0905 13 6 5.9016 -1.7308 6.0882 14 6 6.1683 -2.0506 7.4009 15 6 7.3311 -2.7266 7.7465 16 6 8.2434 -3.0911 6.7803 17 6 7.9926 -2.7770 5.4458 18 6 8.9288 -3.1409 4.3730 19 8 9.9648 -3.7335 4.6122 20 7 8.5947 -2.7917 3.1089 21 6 9.4343 -3.1075 2.0720 22 1 9.0278 -3.4675 1.1385 23 6 10.8094 -2.9642 2.2225 24 7 11.2891 -2.1900 3.1675 25 14 11.9738 -3.8738 1.0795 26 1 12.2657 -3.0278 -0.1055 27 1 13.2387 -4.1734 1.7976 28 1 11.3427 -5.1434 0.6380 29 16 2.4856 -1.4020 -0.0077 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 4.2531 1.7001 0.0002 34 1 5.9949 -0.1798 -0.5135 35 1 5.4057 -1.8594 -0.5135 36 1 4.9208 0.7059 2.0798 37 1 6.2496 0.0880 3.0905 38 1 6.6072 0.8803 1.5375 39 1 7.0482 -2.6723 0.8293 40 1 7.8904 -1.1179 1.0362 41 1 4.9941 -1.2042 5.8317 42 1 5.4648 -1.7714 8.1713 43 1 7.5224 -2.9679 8.7816 44 1 9.1457 -3.6170 7.0550 45 1 12.2483 -2.0903 3.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053145693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = 85.681391 kcal Electronic energy + Delta-G solvation = -30823.671828 eV Core-core repulsion = 26740.893535 eV Total energy + Delta-G solvation = -4082.778293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.120 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.52741 -39.75845 -37.77640 -37.38336 -35.83375 -33.79521 -32.54442 -31.92539 -30.42192 -30.14223 -28.76321 -27.38182 -26.09054 -25.79306 -23.89605 -23.09141 -22.55071 -21.27760 -20.58916 -19.35203 -18.77975 -17.98775 -17.82912 -16.95051 -15.78685 -15.56703 -15.31486 -15.06309 -14.89924 -14.65243 -14.57297 -14.20818 -14.01746 -13.84082 -13.72300 -13.50247 -13.02370 -12.90248 -12.73651 -12.57138 -12.33002 -12.22862 -12.05353 -11.91720 -11.87479 -11.44317 -11.29386 -11.22133 -11.10379 -10.96047 -10.94435 -10.66071 -10.50217 -9.62746 -9.58437 -9.25525 -8.94560 -8.78942 -8.74762 -8.37561 -8.36575 -8.00839 -7.05503 -6.71573 -4.56012 0.68095 1.33863 1.49565 1.66831 1.78186 2.79076 2.99846 3.10195 3.13511 3.22040 3.70175 3.89762 4.03710 4.12096 4.49676 4.66669 4.85938 4.88369 4.94731 5.09904 5.11947 5.22804 5.27960 5.37794 5.44614 5.50011 5.55379 5.65636 5.66270 5.71054 5.80734 5.85458 5.96158 6.00737 6.08911 6.16599 6.17103 6.42049 6.59602 6.71943 6.80847 7.01171 7.05814 7.12716 7.22939 7.32761 7.50195 7.58715 7.71633 8.09345 8.44095 8.69429 9.16885 9.49256 10.29474 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.009243 B = 0.003154 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.574472 B = 8876.159440 C =11277.489314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.028 3.972 3 N -0.476 5.476 4 C 0.034 3.966 5 C -0.196 4.196 6 C 0.127 3.873 7 N -0.515 5.515 8 C 0.022 3.978 9 C 0.124 3.876 10 C 0.363 3.637 11 N -0.544 5.544 12 C 0.167 3.833 13 C -0.130 4.130 14 C -0.090 4.090 15 C -0.176 4.176 16 C -0.039 4.039 17 C -0.209 4.209 18 C 0.520 3.480 19 O -0.502 6.502 20 N -0.351 5.351 21 C -0.386 4.386 22 H 0.107 0.893 23 C 0.079 3.921 24 N -0.799 5.799 25 Si 0.927 3.073 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.263 1.263 29 S 0.143 5.857 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.014 0.986 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 3.304 -5.390 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.249 4.249 3 N -0.191 5.191 4 C -0.117 4.117 5 C -0.317 4.317 6 C -0.003 4.003 7 N -0.239 5.239 8 C -0.126 4.126 9 C -0.005 4.005 10 C 0.100 3.900 11 N -0.272 5.272 12 C 0.051 3.949 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.195 4.195 16 C -0.058 4.058 17 C -0.217 4.217 18 C 0.315 3.685 19 O -0.376 6.376 20 N -0.055 5.055 21 C -0.513 4.513 22 H 0.125 0.875 23 C -0.138 4.138 24 N -0.426 5.426 25 Si 0.752 3.248 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.187 1.187 29 S 0.397 5.603 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.314 2.538 -4.972 16.300 hybrid contribution 2.656 0.482 -0.448 2.737 sum -12.658 3.019 -5.421 14.097 Atomic orbital electron populations 1.20389 0.85561 1.04059 1.03523 1.26970 1.01684 0.91596 1.04680 1.66263 1.04892 1.31805 1.16099 1.21637 0.91013 0.95830 1.03247 1.25787 0.99733 0.95902 1.10322 1.20437 0.88049 1.00909 0.90941 1.61682 1.28078 1.21569 1.12567 1.22614 1.00267 0.88058 1.01656 1.20744 0.89760 0.99342 0.90656 1.22591 0.84633 0.87090 0.95661 1.68467 1.30930 1.29256 0.98551 1.18843 0.91647 0.93283 0.91146 1.20594 0.99538 1.03548 0.91331 1.20968 0.96742 0.97607 0.95690 1.20830 0.95878 1.04170 0.98664 1.20878 0.98001 0.95732 0.91228 1.20857 0.97840 1.07818 0.95213 1.18189 0.86664 0.81446 0.82240 1.90664 1.24625 1.40448 1.81874 1.42248 1.15696 1.38917 1.08626 1.19558 0.87879 1.48916 0.94903 0.87540 1.25397 0.98042 0.93716 0.96627 1.69805 1.15305 1.28277 1.29227 0.85955 0.79497 0.80215 0.79163 1.19860 1.20201 1.18709 1.83990 0.97277 1.11737 1.67254 0.89940 0.90232 0.89529 0.81237 0.92567 0.89516 0.92171 0.88200 0.96733 0.88545 0.91192 0.85792 0.86558 0.86665 0.85953 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.00 0.38 -0.18 16 2 C 0.03 0.31 7.39 -13.45 -0.10 0.21 16 3 N -0.48 -6.20 10.54 -11.86 -0.13 -6.33 16 4 C 0.03 0.43 9.85 -19.18 -0.19 0.24 16 5 C -0.20 -2.38 5.50 -35.92 -0.20 -2.58 16 6 C 0.13 1.54 5.50 -4.98 -0.03 1.51 16 7 N -0.51 -7.81 4.42 -245.82 -1.09 -8.90 16 8 C 0.02 0.34 8.86 60.07 0.53 0.87 16 9 C 0.12 2.12 4.08 -4.97 -0.02 2.10 16 10 C 0.36 7.81 7.20 -154.87 -1.11 6.69 16 11 N -0.54 -11.49 7.07 -8.10 -0.06 -11.55 16 12 C 0.17 3.59 6.63 -84.49 -0.56 3.03 16 13 C -0.13 -2.36 10.03 -39.25 -0.39 -2.75 16 14 C -0.09 -1.45 10.00 -39.54 -0.40 -1.84 16 15 C -0.18 -2.99 10.02 -39.51 -0.40 -3.38 16 16 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 17 C -0.21 -4.90 5.89 -104.77 -0.62 -5.52 16 18 C 0.52 13.80 6.93 -12.47 -0.09 13.72 16 19 O -0.50 -14.63 14.28 5.17 0.07 -14.56 16 20 N -0.35 -8.71 2.68 -59.56 -0.16 -8.87 16 21 C -0.39 -9.48 8.24 -14.88 -0.12 -9.60 16 22 H 0.11 2.34 7.07 -52.49 -0.37 1.97 16 23 C 0.08 2.00 4.36 -17.49 -0.08 1.93 16 24 N -0.80 -21.76 11.54 55.50 0.64 -21.12 16 25 Si 0.93 19.32 29.60 -169.99 -5.03 14.29 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 29 S 0.14 1.58 23.18 -107.50 -2.49 -0.91 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.06 0.62 8.12 -51.92 -0.42 0.20 16 35 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 36 H 0.06 0.87 6.32 -51.93 -0.33 0.54 16 37 H 0.10 1.80 5.59 -51.93 -0.29 1.51 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 1.52 7.38 -51.93 -0.38 1.14 16 40 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 41 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.12 2.50 7.83 -52.49 -0.41 2.09 16 45 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -31.63 386.61 -11.73 -43.36 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.55 Total: 5.50 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.77 Total: 3.25 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.79 Total: -56.77 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.49 Total: -0.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.63 -11.73 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053145693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.042 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds