Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 120.00003 * 2 1 4 4 C 1.50699 * 109.46905 * 274.99915 * 3 2 1 5 5 H 1.07996 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99957 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99722 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00124 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47313 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47303 * 120.00306 * 8 6 4 11 11 H 1.48500 * 109.46810 * 239.99852 * 8 6 4 12 12 S 1.65597 * 119.99900 * 180.02562 * 2 1 3 13 13 O 1.42107 * 106.40281 * 156.45653 * 12 2 1 14 14 O 1.42095 * 106.40546 * 23.53998 * 12 2 1 15 15 N 1.65601 * 107.21930 * 269.99888 * 12 2 1 16 16 C 1.46496 * 120.00258 * 64.99836 * 15 12 2 17 17 C 1.52996 * 109.47178 * 165.49887 * 16 15 12 18 18 C 1.50694 * 110.01665 * 296.56446 * 17 16 15 19 19 C 1.38240 * 119.97891 * 352.30403 * 18 17 16 20 20 C 1.38197 * 120.03020 * 179.76377 * 19 18 17 21 21 C 1.38463 * 119.97232 * 0.51291 * 20 19 18 22 22 F 1.35101 * 120.02468 * 179.76271 * 21 20 19 23 23 C 1.38461 * 119.94601 * 359.74248 * 21 20 19 24 24 C 1.38194 * 119.97745 * 0.02562 * 23 21 20 25 25 C 1.54265 * 110.07172 * 57.98676 * 17 16 15 26 26 C 1.54883 * 104.19869 * 95.69764 * 25 17 16 27 27 C 1.54893 * 102.75175 * 37.93794 * 26 25 17 28 28 C 1.53875 * 110.02918 * 175.17487 * 17 16 15 29 29 H 1.09001 * 109.46933 * 269.99962 * 1 2 3 30 30 H 1.08997 * 109.47120 * 29.99413 * 1 2 3 31 31 H 1.08995 * 109.47263 * 150.00033 * 1 2 3 32 32 H 1.08997 * 109.47232 * 34.99915 * 3 2 1 33 33 H 1.09001 * 109.47210 * 155.00269 * 3 2 1 34 34 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 35 35 H 0.97005 * 120.00155 * 245.00600 * 15 12 2 36 36 H 1.09005 * 109.46923 * 45.49881 * 16 15 12 37 37 H 1.09001 * 109.46830 * 285.50198 * 16 15 12 38 38 H 1.08006 * 119.98158 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.01541 * 180.25654 * 20 19 18 40 40 H 1.08003 * 120.00821 * 180.02562 * 23 21 20 41 41 H 1.07999 * 119.98808 * 180.02562 * 24 23 21 42 42 H 1.09005 * 110.48136 * 214.37112 * 25 17 16 43 43 H 1.08990 * 110.48946 * 337.01423 * 25 17 16 44 44 H 1.09005 * 110.75865 * 279.62808 * 26 25 17 45 45 H 1.09000 * 110.75816 * 156.25436 * 26 25 17 46 46 H 1.08997 * 110.48809 * 203.38010 * 27 26 25 47 47 H 1.09005 * 110.48623 * 80.73507 * 27 26 25 48 48 H 1.08994 * 110.03718 * 359.94869 * 28 17 16 49 49 H 1.08999 * 110.03305 * 121.38208 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 3.0007 2.9503 -1.6665 7 7 3.5034 3.6469 -0.6707 8 14 3.1784 3.5667 -3.4209 9 1 2.5301 2.6073 -4.3507 10 1 2.5280 4.8956 -3.5470 11 1 4.6193 3.6867 -3.7596 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5451 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5810 16 6 1.3947 -2.1789 2.4393 17 6 1.8888 -2.8754 3.7087 18 6 2.5367 -4.1897 3.3570 19 6 2.4700 -4.6680 2.0617 20 6 3.0679 -5.8709 1.7369 21 6 3.7250 -6.6022 2.7119 22 9 4.3058 -7.7806 2.3967 23 6 3.7866 -6.1248 4.0101 24 6 3.1920 -4.9194 4.3315 25 6 2.8952 -1.9719 4.4508 26 6 2.0373 -1.2397 5.5124 27 6 1.0460 -2.3390 5.9683 28 6 0.7130 -3.1088 4.6735 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6502 2.0043 0.5894 33 1 3.1858 1.1177 0.4343 34 1 3.9675 4.4801 -0.8473 35 1 3.4388 -1.8968 1.9392 36 1 0.7123 -2.8396 1.9044 37 1 0.8743 -1.2597 2.7082 38 1 1.9539 -4.0993 1.3023 39 1 3.0192 -6.2423 0.7240 40 1 4.2992 -6.6942 4.7714 41 1 3.2404 -4.5466 5.3439 42 1 3.6656 -2.5743 4.9323 43 1 3.3441 -1.2556 3.7629 44 1 1.5044 -0.4000 5.0662 45 1 2.6556 -0.9071 6.3462 46 1 0.1455 -1.8905 6.3878 47 1 1.5178 -3.0007 6.6948 48 1 -0.2094 -2.7250 4.2378 49 1 0.6111 -4.1727 4.8874 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056070485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -103.512633 kcal Electronic energy + Delta-G solvation = -33036.413530 eV Core-core repulsion = 28618.202287 eV Total energy + Delta-G solvation = -4418.211243 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.151 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.01349 -40.62399 -37.80392 -36.65026 -35.51695 -35.19893 -34.76821 -32.45012 -31.44459 -31.22675 -28.97906 -28.13208 -27.79323 -25.16391 -24.91893 -22.93743 -22.48867 -22.29992 -20.90388 -19.37065 -18.91007 -18.02992 -17.35831 -16.83363 -16.65608 -16.39869 -16.18260 -15.74182 -15.70566 -15.38873 -15.04693 -14.69410 -14.30149 -14.06481 -13.82693 -13.59291 -13.41343 -13.39572 -13.30776 -12.84326 -12.80246 -12.42383 -12.31515 -12.17895 -11.86991 -11.64928 -11.52680 -11.36022 -11.33711 -11.26306 -11.17049 -11.11836 -11.09612 -11.01106 -10.73859 -10.71760 -10.57491 -10.49487 -10.04858 -9.76775 -9.40384 -9.19257 -8.66448 -8.46365 -8.09124 -6.08193 -4.12053 0.96206 1.07141 1.20341 3.30029 3.37827 3.38045 3.42773 3.50227 4.06383 4.11109 4.24439 4.28266 4.43260 4.44123 4.62309 4.73242 4.76277 4.92788 4.99525 5.11033 5.14120 5.22160 5.25613 5.27404 5.35160 5.45723 5.47080 5.58913 5.63561 5.67940 5.70988 5.76272 5.81336 5.85280 5.90820 5.95677 5.97225 6.02766 6.13792 6.15460 6.20088 6.27925 6.39029 6.53568 6.73519 7.07075 7.23849 7.39840 7.59008 7.89538 8.18670 8.90684 9.53390 11.00411 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002973 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.830397 B = 9416.464992 C =10638.525471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.779 3.221 13 O -0.963 6.963 14 O -0.999 6.999 15 N -1.134 6.134 16 C 0.130 3.870 17 C -0.026 4.026 18 C -0.077 4.077 19 C -0.086 4.086 20 C -0.151 4.151 21 C 0.090 3.910 22 F -0.143 7.143 23 C -0.155 4.155 24 C -0.087 4.087 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.111 4.111 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.413 0.587 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -15.369 16.085 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.787 3.213 13 O -0.946 6.946 14 O -0.982 6.982 15 N -0.894 5.894 16 C 0.003 3.997 17 C -0.028 4.028 18 C -0.077 4.077 19 C -0.104 4.104 20 C -0.170 4.170 21 C 0.071 3.929 22 F -0.122 7.122 23 C -0.174 4.174 24 C -0.105 4.105 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.952 -15.729 15.259 22.467 hybrid contribution 0.607 0.435 -0.570 0.939 sum -4.345 -15.294 14.689 21.646 Atomic orbital electron populations 1.21375 0.80227 1.03551 1.00141 1.57576 1.14246 1.23290 1.88706 1.19046 0.90988 0.78714 0.97662 1.21537 1.36024 1.06319 0.92984 0.92144 1.24933 0.95098 0.96507 0.97498 1.69925 1.37346 1.15325 1.30859 0.86463 0.78030 0.78502 0.84592 1.19624 1.20949 1.20782 1.01998 0.73402 0.73020 0.72886 1.93652 1.40620 1.84787 1.75591 1.93515 1.67636 1.60172 1.76900 1.56375 1.14646 1.86096 1.32311 1.21341 0.88127 0.99573 0.90658 1.20354 0.95680 0.91608 0.95123 1.19829 0.98597 0.95927 0.93356 1.21351 0.97713 0.94586 0.96782 1.21248 0.99963 0.96084 0.99658 1.17765 0.97807 0.83086 0.94209 1.91489 1.82362 1.44748 1.93610 1.21074 1.03226 0.98051 0.95045 1.20814 0.96632 0.93450 0.99575 1.22631 0.97156 0.98209 0.97687 1.22513 0.97530 0.97915 0.98288 1.22370 0.99397 0.97403 0.96900 1.22269 0.97011 1.00996 0.94678 0.94332 0.90382 0.91569 0.94708 0.94463 0.92743 0.75216 0.90283 0.91032 0.83895 0.84668 0.84985 0.85034 0.90900 0.90290 0.90930 0.91410 0.91473 0.91738 0.90821 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.68 59.85 0.64 2.16 16 2 N -1.00 -19.81 3.23 -123.05 -0.40 -20.20 16 3 C 0.26 6.31 5.08 -5.19 -0.03 6.29 16 4 C -0.53 -14.75 9.38 -34.44 -0.32 -15.07 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 S 2.78 52.55 6.09 -107.50 -0.65 51.90 16 13 O -0.96 -22.63 17.11 -57.17 -0.98 -23.61 16 14 O -1.00 -19.42 15.57 -57.17 -0.89 -20.31 16 15 N -1.13 -15.56 4.12 -10.62 -0.04 -15.60 16 16 C 0.13 1.42 4.16 -4.05 -0.02 1.40 16 17 C -0.03 -0.24 0.52 -154.55 -0.08 -0.32 16 18 C -0.08 -0.77 4.45 -104.62 -0.47 -1.23 16 19 C -0.09 -1.02 8.53 -39.60 -0.34 -1.35 16 20 C -0.15 -1.77 10.03 -39.51 -0.40 -2.17 16 21 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 22 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 23 C -0.16 -1.47 10.03 -39.52 -0.40 -1.87 16 24 C -0.09 -0.76 8.40 -39.59 -0.33 -1.10 16 25 C -0.12 -1.04 5.45 -25.08 -0.14 -1.17 16 26 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 27 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 28 C -0.11 -0.82 5.95 -25.61 -0.15 -0.97 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 31 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 32 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.41 5.27 7.23 -34.47 -0.25 5.02 16 36 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.14 1.84 4.78 -52.48 -0.25 1.58 16 39 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.13 0.89 7.32 -52.49 -0.38 0.50 16 42 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 43 H 0.08 0.79 6.46 -51.93 -0.34 0.45 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 49 H 0.07 0.51 7.49 -51.93 -0.39 0.12 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -33.28 402.55 -11.11 -44.39 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.21 Total: 2.59 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.75 Total: -15.12 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.94 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.87 Total: -43.92 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.65 Total: 51.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.28 -11.11 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056070485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.126 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds