Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 120.00003 * 2 1 4 4 C 1.50699 * 109.46905 * 274.99915 * 3 2 1 5 5 H 1.07996 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99957 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99722 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00124 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47313 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47303 * 120.00306 * 8 6 4 11 11 H 1.48500 * 109.46810 * 239.99852 * 8 6 4 12 12 S 1.65597 * 119.99900 * 180.02562 * 2 1 3 13 13 O 1.42107 * 106.40281 * 156.45653 * 12 2 1 14 14 O 1.42095 * 106.40546 * 23.53998 * 12 2 1 15 15 N 1.65601 * 107.21930 * 269.99888 * 12 2 1 16 16 C 1.46496 * 120.00258 * 64.99836 * 15 12 2 17 17 C 1.52996 * 109.47178 * 165.49887 * 16 15 12 18 18 C 1.50694 * 110.01665 * 296.56446 * 17 16 15 19 19 C 1.38240 * 119.97891 * 352.30403 * 18 17 16 20 20 C 1.38197 * 120.03020 * 179.76377 * 19 18 17 21 21 C 1.38463 * 119.97232 * 0.51291 * 20 19 18 22 22 F 1.35101 * 120.02468 * 179.76271 * 21 20 19 23 23 C 1.38461 * 119.94601 * 359.74248 * 21 20 19 24 24 C 1.38194 * 119.97745 * 0.02562 * 23 21 20 25 25 C 1.54265 * 110.07172 * 57.98676 * 17 16 15 26 26 C 1.54883 * 104.19869 * 95.69764 * 25 17 16 27 27 C 1.54893 * 102.75175 * 37.93794 * 26 25 17 28 28 C 1.53875 * 110.02918 * 175.17487 * 17 16 15 29 29 H 1.09001 * 109.46933 * 269.99962 * 1 2 3 30 30 H 1.08997 * 109.47120 * 29.99413 * 1 2 3 31 31 H 1.08995 * 109.47263 * 150.00033 * 1 2 3 32 32 H 1.08997 * 109.47232 * 34.99915 * 3 2 1 33 33 H 1.09001 * 109.47210 * 155.00269 * 3 2 1 34 34 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 35 35 H 0.97005 * 120.00155 * 245.00600 * 15 12 2 36 36 H 1.09005 * 109.46923 * 45.49881 * 16 15 12 37 37 H 1.09001 * 109.46830 * 285.50198 * 16 15 12 38 38 H 1.08006 * 119.98158 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.01541 * 180.25654 * 20 19 18 40 40 H 1.08003 * 120.00821 * 180.02562 * 23 21 20 41 41 H 1.07999 * 119.98808 * 180.02562 * 24 23 21 42 42 H 1.09005 * 110.48136 * 214.37112 * 25 17 16 43 43 H 1.08990 * 110.48946 * 337.01423 * 25 17 16 44 44 H 1.09005 * 110.75865 * 279.62808 * 26 25 17 45 45 H 1.09000 * 110.75816 * 156.25436 * 26 25 17 46 46 H 1.08997 * 110.48809 * 203.38010 * 27 26 25 47 47 H 1.09005 * 110.48623 * 80.73507 * 27 26 25 48 48 H 1.08994 * 110.03718 * 359.94869 * 28 17 16 49 49 H 1.08999 * 110.03305 * 121.38208 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 3.0007 2.9503 -1.6665 7 7 3.5034 3.6469 -0.6707 8 14 3.1784 3.5667 -3.4209 9 1 2.5301 2.6073 -4.3507 10 1 2.5280 4.8956 -3.5470 11 1 4.6193 3.6867 -3.7596 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5451 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5810 16 6 1.3947 -2.1789 2.4393 17 6 1.8888 -2.8754 3.7087 18 6 2.5367 -4.1897 3.3570 19 6 2.4700 -4.6680 2.0617 20 6 3.0679 -5.8709 1.7369 21 6 3.7250 -6.6022 2.7119 22 9 4.3058 -7.7806 2.3967 23 6 3.7866 -6.1248 4.0101 24 6 3.1920 -4.9194 4.3315 25 6 2.8952 -1.9719 4.4508 26 6 2.0373 -1.2397 5.5124 27 6 1.0460 -2.3390 5.9683 28 6 0.7130 -3.1088 4.6735 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6502 2.0043 0.5894 33 1 3.1858 1.1177 0.4343 34 1 3.9675 4.4801 -0.8473 35 1 3.4388 -1.8968 1.9392 36 1 0.7123 -2.8396 1.9044 37 1 0.8743 -1.2597 2.7082 38 1 1.9539 -4.0993 1.3023 39 1 3.0192 -6.2423 0.7240 40 1 4.2992 -6.6942 4.7714 41 1 3.2404 -4.5466 5.3439 42 1 3.6656 -2.5743 4.9323 43 1 3.3441 -1.2556 3.7629 44 1 1.5044 -0.4000 5.0662 45 1 2.6556 -0.9071 6.3462 46 1 0.1455 -1.8905 6.3878 47 1 1.5178 -3.0007 6.6948 48 1 -0.2094 -2.7250 4.2378 49 1 0.6111 -4.1727 4.8874 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056070485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -124.038555 kcal Electronic energy + Delta-G solvation = -33037.303601 eV Core-core repulsion = 28618.202287 eV Total energy + Delta-G solvation = -4419.101314 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.151 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.90182 -41.38966 -38.56538 -38.27436 -37.20923 -36.85713 -35.75119 -34.50485 -32.24993 -32.04232 -29.68022 -29.57970 -28.93487 -26.78464 -25.83625 -24.21680 -23.74238 -23.24694 -21.53203 -20.32159 -20.08858 -19.09378 -18.78004 -18.36180 -18.25697 -17.54773 -17.23907 -16.99154 -16.60249 -16.54370 -16.15225 -15.93372 -15.50016 -15.09052 -14.98042 -14.79654 -14.53855 -14.30679 -14.13747 -14.05913 -13.96768 -13.72311 -13.62537 -13.35666 -13.24826 -13.14465 -13.03526 -12.94579 -12.93336 -12.47663 -12.39535 -12.13937 -12.10309 -11.99250 -11.87512 -11.79043 -11.73212 -11.71447 -11.32965 -11.28307 -10.61272 -10.47530 -10.04151 -9.77740 -9.47529 -8.21261 -6.32768 -0.31854 0.14595 0.27329 1.37426 1.40281 1.51567 2.05563 2.39798 2.58387 2.64750 3.09740 3.28463 3.41623 3.51382 3.55658 3.78006 3.89420 3.95721 4.03776 4.11002 4.29147 4.36866 4.39148 4.40321 4.59037 4.63197 4.66981 4.76801 4.81289 4.85997 4.87721 4.96390 4.99911 5.04134 5.09108 5.11716 5.16919 5.19715 5.21090 5.26801 5.34347 5.42815 5.45969 5.50696 5.58916 5.60355 5.69774 5.86250 5.93557 6.08298 6.14283 6.75716 7.36124 8.86274 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002973 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.830397 B = 9416.464992 C =10638.525471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.274 3.726 4 C -0.551 4.551 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.268 1.268 11 H -0.280 1.280 12 S 2.795 3.205 13 O -1.014 7.014 14 O -1.006 7.006 15 N -1.117 6.117 16 C 0.120 3.880 17 C -0.020 4.020 18 C -0.075 4.075 19 C -0.105 4.105 20 C -0.167 4.167 21 C 0.072 3.928 22 F -0.152 7.152 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.109 4.109 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.419 0.581 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -15.725 18.224 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.844 5.844 3 C 0.150 3.850 4 C -0.590 4.590 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.205 1.205 12 S 2.803 3.197 13 O -0.998 6.998 14 O -0.990 6.990 15 N -0.881 5.881 16 C -0.005 4.005 17 C -0.021 4.021 18 C -0.075 4.075 19 C -0.123 4.123 20 C -0.186 4.186 21 C 0.053 3.947 22 F -0.130 7.130 23 C -0.167 4.167 24 C -0.096 4.096 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.154 4.154 28 C -0.147 4.147 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.820 -16.092 17.395 24.401 hybrid contribution 0.836 0.479 -1.170 1.516 sum -4.984 -15.613 16.225 23.062 Atomic orbital electron populations 1.21622 0.78062 1.03554 1.02705 1.57456 1.15719 1.21863 1.89359 1.18585 0.90414 0.80286 0.95715 1.21882 1.36174 1.06630 0.94320 0.93208 1.25718 0.94823 0.96784 1.01338 1.70003 1.37827 1.15757 1.32599 0.85569 0.78032 0.78470 0.80030 1.19549 1.19337 1.20548 1.01268 0.72068 0.72612 0.73710 1.93575 1.43132 1.85460 1.77675 1.93499 1.67586 1.60010 1.77858 1.55896 1.15979 1.85361 1.30899 1.21662 0.87191 1.00539 0.91146 1.20349 0.96571 0.90844 0.94373 1.19973 0.98379 0.96295 0.92851 1.21292 0.98713 0.94819 0.97483 1.21312 1.00757 0.96586 0.99930 1.17968 0.98522 0.83106 0.95099 1.91464 1.82580 1.45209 1.93790 1.21379 1.02479 0.98234 0.94566 1.21099 0.95284 0.92748 1.00504 1.22661 0.97480 0.98039 0.97733 1.22508 0.97680 0.97927 0.98084 1.22352 0.99477 0.96977 0.96570 1.22279 0.96206 1.01660 0.94548 0.90476 0.91249 0.90702 0.95115 0.96617 0.92359 0.74436 0.90119 0.89803 0.85451 0.85126 0.82610 0.82088 0.89686 0.92000 0.91898 0.90628 0.90669 0.90387 0.90350 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.72 10.68 127.77 1.36 4.08 16 2 N -1.00 -40.18 3.23 -543.23 -1.75 -41.93 16 3 C 0.27 13.69 5.08 85.63 0.43 14.12 16 4 C -0.55 -31.26 9.38 25.60 0.24 -31.02 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.74 5.46 84.66 0.46 1.20 16 7 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 8 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 S 2.80 107.69 6.09 -56.49 -0.34 107.34 16 13 O -1.01 -49.51 17.11 -128.00 -2.19 -51.70 16 14 O -1.01 -39.48 15.57 -128.00 -1.99 -41.48 16 15 N -1.12 -30.61 4.12 -187.50 -0.77 -31.38 16 16 C 0.12 2.48 4.16 86.38 0.36 2.84 16 17 C -0.02 -0.31 0.52 -52.21 -0.03 -0.34 16 18 C -0.07 -1.36 4.45 -19.86 -0.09 -1.45 16 19 C -0.10 -2.45 8.53 22.26 0.19 -2.26 16 20 C -0.17 -4.00 10.03 22.31 0.22 -3.77 16 21 C 0.07 1.59 7.30 22.38 0.16 1.76 16 22 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 23 C -0.15 -2.46 10.03 22.31 0.22 -2.24 16 24 C -0.08 -1.15 8.40 22.26 0.19 -0.96 16 25 C -0.12 -1.84 5.45 31.67 0.17 -1.67 16 26 C -0.12 -1.57 6.91 31.88 0.22 -1.35 16 27 C -0.12 -1.11 6.83 31.67 0.22 -0.89 16 28 C -0.11 -1.26 5.95 31.32 0.19 -1.08 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.07 2.23 7.02 -2.39 -0.02 2.21 16 32 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 33 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 35 H 0.42 10.78 7.23 -96.74 -0.70 10.08 16 36 H 0.08 1.67 6.58 -2.38 -0.02 1.66 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.13 3.33 4.78 -2.91 -0.01 3.32 16 39 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.16 1.42 7.32 -2.91 -0.02 1.40 16 42 H 0.08 1.08 6.44 -2.38 -0.02 1.07 16 43 H 0.06 1.16 6.46 -2.39 -0.02 1.15 16 44 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 49 H 0.08 0.84 7.49 -2.39 -0.02 0.82 16 Total: -1.00 -72.86 402.55 0.84 -72.02 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.27 Total: 19.71 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.53 Total: -23.03 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -2.24 Total: -126.79 kcal Atomic # 8 Polarization: -89.00 SS G_CDS: -4.18 Total: -93.18 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 107.69 SS G_CDS: -0.34 Total: 107.34 kcal Total: -72.86 0.84 -72.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056070485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.015 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds