Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00081 * 2 1 4 4 C 1.50700 * 109.47117 * 269.99961 * 3 2 1 5 5 H 1.08007 * 119.99532 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00356 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99805 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47001 * 89.99719 * 8 6 4 10 10 H 1.48497 * 109.47043 * 209.99530 * 8 6 4 11 11 H 1.48492 * 109.46779 * 329.99542 * 8 6 4 12 12 C 1.34780 * 119.99703 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99374 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00098 * 359.97438 * 12 2 1 15 15 S 1.81403 * 109.46845 * 179.97438 * 14 12 2 16 16 C 1.76197 * 102.99677 * 180.02562 * 15 14 12 17 17 N 1.29639 * 125.41491 * 359.96336 * 16 15 14 18 18 N 1.37764 * 115.60783 * 180.02562 * 17 16 15 19 19 C 1.29579 * 115.62577 * 359.97438 * 18 17 16 20 20 N 1.39000 * 125.40801 * 180.02562 * 19 18 17 21 21 C 1.46495 * 119.99607 * 359.95790 * 20 19 18 22 22 C 1.53001 * 109.47156 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47036 * 59.99753 * 22 21 20 24 24 F 1.39896 * 109.47531 * 179.97438 * 22 21 20 25 25 F 1.39904 * 109.47392 * 300.00047 * 22 21 20 26 26 S 1.76039 * 109.18983 * 359.97438 * 19 18 17 27 27 H 1.09002 * 109.47062 * 270.00608 * 1 2 3 28 28 H 1.08999 * 109.46977 * 30.00265 * 1 2 3 29 29 H 1.09000 * 109.47167 * 150.00553 * 1 2 3 30 30 H 1.08996 * 109.47597 * 29.99606 * 3 2 1 31 31 H 1.09000 * 109.47585 * 150.00199 * 3 2 1 32 32 H 0.97005 * 119.99617 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46739 * 60.00183 * 14 12 2 34 34 H 1.09002 * 109.47323 * 300.00005 * 14 12 2 35 35 H 0.96998 * 119.99894 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.47349 * 300.00040 * 21 20 19 37 37 H 1.09003 * 109.47628 * 60.00003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.5543 3.6175 -0.6733 8 14 3.4389 3.4162 -3.4341 9 1 2.3093 4.2593 -3.9012 10 1 4.6994 4.1987 -3.4964 11 1 3.5560 2.2189 -4.3046 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 16 2.5642 -3.8511 0.0014 16 6 1.5168 -5.2680 0.0021 17 7 0.2206 -5.2440 0.0033 18 7 -0.3977 -6.4751 0.0042 19 6 0.3948 -7.5003 0.0031 20 7 -0.0089 -8.8304 0.0032 21 6 -1.4356 -9.1627 0.0055 22 6 -1.6051 -10.6833 0.0044 23 9 -0.9992 -11.2208 1.1451 24 9 -2.9676 -11.0007 0.0072 25 9 -1.0034 -11.2188 -1.1394 26 16 2.0641 -6.9412 0.0001 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 4.0311 4.4434 -0.8506 33 1 0.7584 -2.5306 -0.8880 34 1 0.7590 -2.5295 0.8920 35 1 0.6541 -9.5384 0.0020 36 1 -1.9046 -8.7451 0.8964 37 1 -1.9077 -8.7443 -0.8835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057773268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -110.850603 kcal Electronic energy + Delta-G solvation = -26892.410453 eV Core-core repulsion = 22123.030915 eV Total energy + Delta-G solvation = -4769.379538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 370.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.84175 -48.34719 -48.31991 -39.78443 -39.06826 -37.04084 -34.99539 -32.73197 -31.89615 -30.21012 -29.44477 -27.47810 -25.75986 -25.26234 -24.15304 -22.85107 -21.35422 -20.38240 -19.31125 -19.10750 -18.94508 -18.23696 -17.41703 -16.67068 -16.52553 -16.47304 -15.98735 -15.60871 -15.34954 -15.21103 -15.10532 -14.93056 -14.73478 -14.47440 -14.45047 -14.34915 -14.22745 -13.88164 -13.45432 -13.27896 -12.74988 -12.60983 -12.29146 -12.15502 -11.94295 -11.86810 -11.31533 -11.23862 -10.94162 -10.75398 -10.58928 -10.34902 -10.20972 -9.96031 -9.70020 -9.24632 -9.20388 -8.48010 -7.87741 -7.75935 -6.09104 -4.14268 -0.04711 0.44262 0.72505 1.06665 1.83693 1.94406 1.95464 2.22604 2.94560 3.13628 3.27521 3.28211 3.35207 3.39798 3.45983 3.78154 4.11567 4.40854 4.41001 4.55235 4.71038 4.86352 5.05003 5.25697 5.31583 5.60733 5.75877 5.85563 6.15074 6.24095 6.90289 7.33249 7.40018 7.63373 7.86064 8.15620 8.20003 8.72918 8.92091 9.50934 10.99027 Molecular weight = 370.05amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001566 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.352442 B =17875.990327 C =18052.733333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.522 3.478 13 O -0.527 6.527 14 C -0.146 4.146 15 S 0.103 5.897 16 C 0.008 3.992 17 N -0.265 5.265 18 N -0.348 5.348 19 C 0.307 3.693 20 N -0.691 5.691 21 C 0.094 3.906 22 C 0.450 3.550 23 F -0.177 7.177 24 F -0.170 7.170 25 F -0.177 7.177 26 S 0.092 5.908 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 -29.293 3.225 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.306 3.694 13 O -0.405 6.405 14 C -0.300 4.300 15 S 0.331 5.669 16 C -0.391 4.391 17 N -0.095 5.095 18 N -0.184 5.184 19 C -0.076 4.076 20 N -0.337 5.337 21 C -0.034 4.034 22 C 0.395 3.605 23 F -0.158 7.158 24 F -0.151 7.151 25 F -0.158 7.158 26 S 0.326 5.674 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.262 0.738 36 H 0.136 0.864 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.290 -28.827 3.273 30.463 hybrid contribution -1.218 -0.300 -0.997 1.602 sum -10.508 -29.126 2.276 31.047 Atomic orbital electron populations 1.21747 0.80906 1.03021 1.00900 1.48083 1.06496 1.07264 1.70467 1.19390 0.92654 0.77506 0.97808 1.21407 1.36828 1.06458 0.92138 0.92343 1.24934 0.95234 0.96343 0.97539 1.69930 1.38199 1.14301 1.30774 0.86477 0.77712 0.78628 0.84511 1.20622 1.21035 1.19834 1.19260 0.87673 0.83898 0.78577 1.90729 1.13113 1.86422 1.50206 1.24013 1.02209 0.95077 1.08660 1.86550 1.02662 0.88455 1.89269 1.31010 0.98905 1.03090 1.06060 1.75511 1.03457 1.13282 1.17247 1.75075 1.25925 0.92209 1.25199 1.25673 0.93037 0.90321 0.98571 1.43144 1.06102 1.01528 1.82895 1.22537 0.84148 0.88271 1.08487 1.20466 0.74541 0.91453 0.73996 1.93246 1.83227 1.88349 1.51018 1.93248 1.31686 1.93969 1.96193 1.93248 1.83392 1.88415 1.50765 1.85677 1.05127 0.98101 1.78526 0.93244 0.90282 0.92208 0.94572 0.93525 0.92631 0.86073 0.86202 0.73792 0.86440 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.24 59.85 0.61 1.79 16 2 N -0.59 -12.02 2.86 -182.96 -0.52 -12.54 16 3 C 0.25 6.22 5.16 -5.20 -0.03 6.19 16 4 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.52 10.34 7.69 -10.98 -0.08 10.25 16 13 O -0.53 -12.57 15.44 5.55 0.09 -12.48 16 14 C -0.15 -2.14 4.58 36.01 0.16 -1.97 16 15 S 0.10 1.45 21.30 -107.50 -2.29 -0.84 16 16 C 0.01 0.11 7.82 51.84 0.41 0.51 16 17 N -0.27 -3.62 11.62 31.11 0.36 -3.26 16 18 N -0.35 -4.25 11.68 30.85 0.36 -3.89 16 19 C 0.31 2.86 8.42 -87.39 -0.74 2.12 16 20 N -0.69 -4.08 5.59 -60.83 -0.34 -4.42 16 21 C 0.09 0.43 5.95 -4.04 -0.02 0.41 16 22 C 0.45 2.13 3.11 37.16 0.12 2.25 16 23 F -0.18 -0.98 17.18 2.25 0.04 -0.94 16 24 F -0.17 -0.95 17.32 2.25 0.04 -0.91 16 25 F -0.18 -0.99 17.18 2.25 0.04 -0.95 16 26 S 0.09 0.87 23.39 -107.50 -2.51 -1.65 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.12 1.62 7.40 -51.92 -0.38 1.23 16 34 H 0.12 1.52 8.11 -51.92 -0.42 1.09 16 35 H 0.42 1.67 8.48 -40.82 -0.35 1.33 16 36 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -33.78 370.06 -6.97 -40.75 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -3.52 Total: -3.83 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 0.01 Total: 8.19 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.60 Total: -49.45 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.12 Total: -2.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -4.80 Total: -2.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.78 -6.97 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057773268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.103 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds