Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00081 * 2 1 4 4 C 1.50700 * 109.47117 * 269.99961 * 3 2 1 5 5 H 1.08007 * 119.99532 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00356 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99805 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47001 * 89.99719 * 8 6 4 10 10 H 1.48497 * 109.47043 * 209.99530 * 8 6 4 11 11 H 1.48492 * 109.46779 * 329.99542 * 8 6 4 12 12 C 1.34780 * 119.99703 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99374 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00098 * 359.97438 * 12 2 1 15 15 S 1.81403 * 109.46845 * 179.97438 * 14 12 2 16 16 C 1.76197 * 102.99677 * 180.02562 * 15 14 12 17 17 N 1.29639 * 125.41491 * 359.96336 * 16 15 14 18 18 N 1.37764 * 115.60783 * 180.02562 * 17 16 15 19 19 C 1.29579 * 115.62577 * 359.97438 * 18 17 16 20 20 N 1.39000 * 125.40801 * 180.02562 * 19 18 17 21 21 C 1.46495 * 119.99607 * 359.95790 * 20 19 18 22 22 C 1.53001 * 109.47156 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47036 * 59.99753 * 22 21 20 24 24 F 1.39896 * 109.47531 * 179.97438 * 22 21 20 25 25 F 1.39904 * 109.47392 * 300.00047 * 22 21 20 26 26 S 1.76039 * 109.18983 * 359.97438 * 19 18 17 27 27 H 1.09002 * 109.47062 * 270.00608 * 1 2 3 28 28 H 1.08999 * 109.46977 * 30.00265 * 1 2 3 29 29 H 1.09000 * 109.47167 * 150.00553 * 1 2 3 30 30 H 1.08996 * 109.47597 * 29.99606 * 3 2 1 31 31 H 1.09000 * 109.47585 * 150.00199 * 3 2 1 32 32 H 0.97005 * 119.99617 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46739 * 60.00183 * 14 12 2 34 34 H 1.09002 * 109.47323 * 300.00005 * 14 12 2 35 35 H 0.96998 * 119.99894 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.47349 * 300.00040 * 21 20 19 37 37 H 1.09003 * 109.47628 * 60.00003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.5543 3.6175 -0.6733 8 14 3.4389 3.4162 -3.4341 9 1 2.3093 4.2593 -3.9012 10 1 4.6994 4.1987 -3.4964 11 1 3.5560 2.2189 -4.3046 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 16 2.5642 -3.8511 0.0014 16 6 1.5168 -5.2680 0.0021 17 7 0.2206 -5.2440 0.0033 18 7 -0.3977 -6.4751 0.0042 19 6 0.3948 -7.5003 0.0031 20 7 -0.0089 -8.8304 0.0032 21 6 -1.4356 -9.1627 0.0055 22 6 -1.6051 -10.6833 0.0044 23 9 -0.9992 -11.2208 1.1451 24 9 -2.9676 -11.0007 0.0072 25 9 -1.0034 -11.2188 -1.1394 26 16 2.0641 -6.9412 0.0001 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 4.0311 4.4434 -0.8506 33 1 0.7584 -2.5306 -0.8880 34 1 0.7590 -2.5295 0.8920 35 1 0.6541 -9.5384 0.0020 36 1 -1.9046 -8.7451 0.8964 37 1 -1.9077 -8.7443 -0.8835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057773268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -133.628803 kcal Electronic energy + Delta-G solvation = -26893.398190 eV Core-core repulsion = 22123.030915 eV Total energy + Delta-G solvation = -4770.367275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 370.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.26011 -48.77135 -48.74073 -40.67643 -40.60542 -37.65891 -36.69428 -34.77249 -32.65655 -31.64353 -30.09019 -29.19058 -27.30159 -26.04943 -24.80752 -24.63848 -22.10995 -21.16440 -20.29019 -19.72133 -19.59030 -18.98236 -18.70833 -18.25371 -17.99845 -17.44248 -16.86931 -16.83361 -16.56169 -16.16625 -15.89682 -15.72337 -15.44672 -15.15852 -15.01821 -14.92584 -14.87695 -14.85937 -14.66055 -14.39114 -14.30381 -13.89563 -13.61380 -13.46461 -13.13234 -13.04284 -12.83210 -12.68114 -12.54004 -12.21425 -12.17413 -11.71812 -11.67921 -11.22821 -10.88611 -10.75366 -10.63104 -9.88556 -9.51116 -8.82925 -8.22178 -6.36467 -0.87673 -0.38921 -0.09441 0.11595 0.86824 1.10964 1.36290 1.38228 1.40991 1.50901 1.62289 1.69403 2.24995 2.42424 2.55410 2.88645 3.00106 3.08116 3.38702 3.50734 3.89102 3.93011 4.04781 4.18425 4.19899 4.43181 4.70478 4.94829 4.98942 5.11005 5.22312 5.52435 5.76501 5.78435 6.04691 6.57879 6.72662 6.81309 7.18682 7.36404 8.84994 Molecular weight = 370.05amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001566 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.352442 B =17875.990327 C =18052.733333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.516 3.484 13 O -0.577 6.577 14 C -0.129 4.129 15 S 0.077 5.923 16 C -0.006 4.006 17 N -0.281 5.281 18 N -0.375 5.375 19 C 0.314 3.686 20 N -0.677 5.677 21 C 0.094 3.906 22 C 0.459 3.541 23 F -0.180 7.180 24 F -0.173 7.173 25 F -0.181 7.181 26 S 0.138 5.862 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.434 0.566 36 H 0.126 0.874 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 -31.310 2.385 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.330 5.330 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.302 3.698 13 O -0.459 6.459 14 C -0.281 4.281 15 S 0.304 5.696 16 C -0.406 4.406 17 N -0.111 5.111 18 N -0.213 5.213 19 C -0.069 4.069 20 N -0.322 5.322 21 C -0.034 4.034 22 C 0.405 3.595 23 F -0.162 7.162 24 F -0.155 7.155 25 F -0.162 7.162 26 S 0.372 5.628 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.275 0.725 36 H 0.144 0.856 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.820 -30.907 2.438 32.837 hybrid contribution -0.801 0.135 -0.684 1.062 sum -11.622 -30.772 1.754 32.940 Atomic orbital electron populations 1.22035 0.77487 1.04309 1.03049 1.48061 1.08597 1.05949 1.70411 1.18855 0.91349 0.79779 0.96254 1.21692 1.36937 1.06631 0.92998 0.92704 1.25831 0.94905 0.96455 1.01858 1.70045 1.38840 1.14763 1.32947 0.85428 0.78023 0.78220 0.79229 1.18936 1.20692 1.19749 1.20027 0.87383 0.85300 0.77090 1.90698 1.15557 1.87421 1.52177 1.23768 1.01635 0.92158 1.10549 1.86636 1.03319 0.89337 1.90350 1.30784 0.98839 1.03884 1.07090 1.75458 1.03918 1.14696 1.16982 1.75052 1.26260 0.92292 1.27711 1.25825 0.93127 0.90991 0.96922 1.43279 1.07195 1.00535 1.81231 1.22642 0.83261 0.88115 1.09361 1.20367 0.74219 0.91290 0.73666 1.93244 1.83268 1.88446 1.51232 1.93244 1.32042 1.93985 1.96195 1.93245 1.83440 1.88518 1.51009 1.85533 1.04161 0.95391 1.77722 0.90623 0.90943 0.88973 0.95266 0.97767 0.92386 0.84362 0.83836 0.72530 0.85576 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 10.24 127.77 1.31 3.40 16 2 N -0.60 -24.52 2.86 -851.13 -2.43 -26.95 16 3 C 0.26 13.61 5.16 85.63 0.44 14.05 16 4 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 8 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.52 20.60 7.69 87.66 0.67 21.27 16 13 O -0.58 -28.59 15.44 -3.04 -0.05 -28.64 16 14 C -0.13 -3.60 4.58 71.24 0.33 -3.28 16 15 S 0.08 2.12 21.30 -56.49 -1.20 0.92 16 16 C -0.01 -0.15 7.82 130.57 1.02 0.87 16 17 N -0.28 -7.17 11.62 -55.47 -0.64 -7.81 16 18 N -0.38 -8.40 11.68 -56.29 -0.66 -9.06 16 19 C 0.31 5.12 8.42 179.22 1.51 6.63 16 20 N -0.68 -6.22 5.59 -346.38 -1.94 -8.16 16 21 C 0.09 0.63 5.95 86.38 0.51 1.15 16 22 C 0.46 3.39 3.11 71.98 0.22 3.61 16 23 F -0.18 -1.62 17.18 44.97 0.77 -0.85 16 24 F -0.17 -1.63 17.32 44.97 0.78 -0.85 16 25 F -0.18 -1.65 17.18 44.97 0.77 -0.88 16 26 S 0.14 2.31 23.39 -56.49 -1.32 0.99 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.09 2.03 6.44 -2.39 -0.02 2.01 16 30 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 31 H 0.00 0.25 7.42 -2.39 -0.02 0.24 16 32 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.14 3.40 7.40 -2.39 -0.02 3.38 16 34 H 0.14 3.33 8.11 -2.39 -0.02 3.31 16 35 H 0.43 2.22 8.48 -92.71 -0.79 1.43 16 36 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -75.08 370.06 3.49 -71.59 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: 0.37 Total: 0.10 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.72 Total: 18.12 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -5.38 Total: -106.94 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 2.32 Total: -2.58 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.52 Total: 1.90 kcal Total: -75.08 3.49 -71.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057773268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.039 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds