Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35860 * 116.99899 * 2 1 4 4 C 1.38861 * 119.91168 * 180.02562 * 3 2 1 5 5 C 1.37860 * 120.08351 * 180.02562 * 4 3 2 6 6 C 1.39576 * 119.91614 * 359.97339 * 5 4 3 7 7 C 1.47771 * 120.08662 * 180.02562 * 6 5 4 8 8 C 1.31514 * 118.66187 * 64.84123 * 7 6 5 9 9 C 1.50168 * 123.05325 * 180.38614 * 8 7 6 10 10 N 1.46835 * 110.25089 * 342.89497 * 9 8 7 11 11 C 1.46903 * 110.99862 * 287.75563 * 10 9 8 12 12 C 1.53006 * 109.46807 * 176.08522 * 11 10 9 13 13 C 1.50693 * 109.47176 * 183.15603 * 12 11 10 14 14 O 1.21300 * 119.99868 * 354.67838 * 13 12 11 15 15 N 1.34774 * 120.00132 * 174.67789 * 13 12 11 16 16 C 1.37102 * 119.99925 * 185.00453 * 15 13 12 17 17 H 1.07995 * 120.00244 * 344.50667 * 16 15 13 18 18 C 1.38950 * 119.99939 * 164.49787 * 16 15 13 19 19 N 1.31410 * 119.99813 * 0.29136 * 18 16 15 20 20 Si 1.86803 * 120.00154 * 180.28634 * 18 16 15 21 21 H 1.48500 * 109.47148 * 60.00203 * 20 18 16 22 22 H 1.48498 * 109.46916 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46780 * 300.00443 * 20 18 16 24 24 C 1.46494 * 120.00153 * 5.00602 * 15 13 12 25 25 C 1.47193 * 109.47268 * 264.76624 * 24 15 13 26 26 N 9.87057 * 87.11385 * 25.37314 * 2 1 3 27 27 C 1.47194 * 110.26492 * 51.19190 * 10 9 8 28 28 C 1.50326 * 118.66332 * 244.86201 * 7 6 5 29 29 C 1.39581 * 119.82601 * 0.27529 * 6 5 4 30 30 C 1.37854 * 119.91449 * 359.47035 * 29 6 5 31 31 H 1.09001 * 109.47089 * 300.00392 * 1 2 3 32 32 H 1.09004 * 109.47143 * 60.00167 * 1 2 3 33 33 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 34 34 H 1.08001 * 119.95898 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.04025 * 179.97438 * 5 4 3 36 36 H 1.08002 * 118.47070 * 0.35813 * 8 7 6 37 37 H 1.08990 * 109.34308 * 103.13936 * 9 8 7 38 38 H 1.09007 * 109.33679 * 222.66231 * 9 8 7 39 39 H 1.08994 * 109.47326 * 296.08104 * 11 10 9 40 40 H 1.08995 * 109.46941 * 56.08314 * 11 10 9 41 41 H 1.09001 * 109.46797 * 303.15231 * 12 11 10 42 42 H 1.08994 * 109.47255 * 63.15129 * 12 11 10 43 43 H 0.96997 * 120.00268 * 179.97438 * 19 18 16 44 44 H 1.09008 * 109.46696 * 24.76673 * 24 15 13 45 45 H 1.09000 * 109.47303 * 144.75785 * 24 15 13 46 46 H 1.09003 * 109.63740 * 170.99271 * 27 10 9 47 47 H 1.08999 * 109.77783 * 50.50963 * 27 10 9 48 48 H 1.09003 * 109.43016 * 283.51531 * 28 7 6 49 49 H 1.08995 * 109.43546 * 43.42430 * 28 7 6 50 50 H 1.08003 * 120.04040 * 179.72586 * 29 6 5 51 51 H 1.08003 * 119.95681 * 180.23157 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.4326 1.2811 -0.0005 5 6 4.0622 2.5076 0.0000 6 6 3.3038 3.6793 0.0005 7 6 3.9746 4.9959 0.0005 8 6 4.6977 5.3355 -1.0442 9 6 5.4278 6.6439 -1.1447 10 7 4.9016 7.5966 -0.1591 11 6 3.5662 8.0708 -0.5463 12 6 3.0113 8.9830 0.5497 13 6 1.6111 9.4072 0.1890 14 8 1.1418 9.0984 -0.8860 15 7 0.8802 10.1297 1.0609 16 6 -0.4275 10.4282 0.7770 17 1 -0.8018 10.3115 -0.2293 18 6 -1.2713 10.8807 1.7840 19 7 -0.8143 11.0279 3.0073 20 14 -3.0551 11.2797 1.3989 21 1 -3.7336 10.0644 0.8814 22 1 -3.7373 11.7398 2.6350 23 1 -3.1120 12.3527 0.3739 24 6 1.4829 10.5962 2.3120 25 6 1.1736 9.6437 3.3907 26 7 0.9320 8.9071 4.2243 27 6 4.8765 6.9841 1.1791 28 6 3.8032 5.8926 1.1949 29 6 1.9100 3.6041 0.0063 30 6 1.2878 2.3740 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 4.0188 0.3740 -0.0014 35 1 5.1408 2.5616 0.0000 36 1 4.7701 4.6408 -1.8680 37 1 6.4891 6.4804 -0.9578 38 1 5.2990 7.0531 -2.1468 39 1 3.6349 8.6267 -1.4813 40 1 2.9019 7.2169 -0.6792 41 1 2.9950 8.4441 1.4971 42 1 3.6452 9.8646 0.6440 43 1 -1.4032 11.3441 3.7102 44 1 2.5637 10.6683 2.1897 45 1 1.0799 11.5765 2.5661 46 1 4.6381 7.7426 1.9248 47 1 5.8487 6.5445 1.4018 48 1 2.8162 6.3541 1.1631 49 1 3.8991 5.3038 2.1071 50 1 1.3198 4.5086 0.0112 51 1 0.2094 2.3151 0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058367654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = 21.135798 kcal Electronic energy + Delta-G solvation = -33412.638980 eV Core-core repulsion = 29085.567915 eV Total energy + Delta-G solvation = -4327.071065 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.45243 -39.77547 -38.68755 -37.52355 -35.79584 -34.24107 -33.67668 -31.96001 -31.41303 -31.05857 -30.46554 -28.96306 -27.50892 -27.32496 -25.55828 -24.14653 -23.80209 -22.54462 -22.32141 -20.89965 -18.89761 -18.38420 -17.95799 -17.83566 -16.88607 -16.38932 -16.29105 -16.01686 -15.95251 -15.45556 -14.89047 -14.72490 -14.70727 -14.14979 -14.02899 -13.88399 -13.80097 -13.71595 -13.52778 -13.02106 -12.96306 -12.75932 -12.47454 -12.44124 -12.31220 -12.15889 -11.89469 -11.62327 -11.55448 -11.39369 -11.27802 -11.19565 -11.15669 -11.02354 -10.97090 -10.88764 -10.46519 -10.46434 -10.37114 -10.29684 -9.26401 -9.17074 -8.97794 -8.62225 -8.19709 -8.11871 -8.10713 -6.45430 -4.05765 1.13424 1.22294 2.11772 3.05044 3.10638 3.19080 3.21321 3.59571 3.59830 3.77907 4.00095 4.06542 4.19724 4.62647 4.63993 4.72003 4.84567 4.88651 4.89920 4.91182 4.93100 5.08398 5.16163 5.20439 5.22304 5.25334 5.35076 5.36901 5.42644 5.49901 5.52997 5.60902 5.66076 5.77031 5.78410 5.86876 5.89137 5.95786 6.01108 6.13473 6.18502 6.19436 6.37642 6.41343 6.42976 6.52147 6.59718 6.78857 6.83188 7.11865 7.17881 7.20091 7.42261 7.86327 8.27133 8.88475 8.98546 9.18062 9.70494 10.53881 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.002706 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.214240 B =10343.916295 C =12222.593737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.153 4.153 5 C -0.070 4.070 6 C -0.084 4.084 7 C -0.073 4.073 8 C -0.179 4.179 9 C 0.085 3.915 10 N -0.530 5.530 11 C 0.071 3.929 12 C -0.137 4.137 13 C 0.459 3.541 14 O -0.577 6.577 15 N -0.450 5.450 16 C -0.300 4.300 17 H 0.108 0.892 18 C 0.028 3.972 19 N -0.896 5.896 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.224 3.776 25 C 0.259 3.741 26 N -0.492 5.492 27 C 0.050 3.950 28 C -0.120 4.120 29 C -0.063 4.063 30 C -0.204 4.204 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.274 0.726 44 H 0.076 0.924 45 H 0.139 0.861 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.128 0.872 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -12.800 -4.567 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.172 4.172 5 C -0.088 4.088 6 C -0.085 4.085 7 C -0.074 4.074 8 C -0.199 4.199 9 C -0.043 4.043 10 N -0.252 5.252 11 C -0.057 4.057 12 C -0.177 4.177 13 C 0.247 3.753 14 O -0.460 6.460 15 N -0.170 5.170 16 C -0.427 4.427 17 H 0.125 0.875 18 C -0.173 4.173 19 N -0.537 5.537 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.197 1.197 24 C 0.096 3.904 25 C -0.058 4.058 26 N -0.174 5.174 27 C -0.078 4.078 28 C -0.159 4.159 29 C -0.081 4.081 30 C -0.223 4.223 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.157 0.843 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.146 0.854 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.664 -13.712 -3.704 17.761 hybrid contribution -1.954 -0.153 -0.201 1.970 sum 8.710 -13.865 -3.905 16.833 Atomic orbital electron populations 1.23067 0.78309 1.03864 1.01626 1.86034 1.21471 1.27081 1.88767 1.19109 0.92357 0.84068 0.96733 1.20312 0.91246 0.98505 1.07106 1.21042 0.99572 0.90559 0.97644 1.18929 0.92962 0.92890 1.03693 1.19637 0.98146 0.93335 0.96248 1.23214 0.99356 0.99642 0.97650 1.21053 0.98399 0.87958 0.96885 1.62762 1.24855 1.35485 1.02060 1.21843 0.87618 0.97998 0.98213 1.21679 0.95472 1.00857 0.99727 1.20093 0.87705 0.81416 0.86070 1.90546 1.73441 1.58316 1.23701 1.43643 1.11554 1.46411 1.15421 1.19771 0.84267 1.41672 0.96989 0.87461 1.25289 1.00559 0.96942 0.94517 1.69583 1.36401 1.46733 1.01032 0.85812 0.81268 0.78961 0.77634 1.19985 1.20906 1.19700 1.18971 0.95616 0.96543 0.79221 1.29260 0.90272 0.92527 0.93741 1.80976 1.12288 1.12276 1.11823 1.22288 0.98192 0.95385 0.91948 1.21081 1.01553 0.96979 0.96263 1.21141 0.93797 0.97326 0.95863 1.21206 1.00174 0.92202 1.08719 0.92513 0.92537 0.88270 0.85253 0.85325 0.87427 0.89552 0.89708 0.90062 0.93443 0.90215 0.89155 0.91492 0.90659 0.84328 0.89647 0.90666 0.89968 0.90569 0.85405 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.60 10.49 -19.30 -0.20 -3.81 16 3 C 0.12 1.48 6.69 -39.12 -0.26 1.22 16 4 C -0.15 -1.73 9.97 -39.49 -0.39 -2.12 16 5 C -0.07 -0.79 9.67 -39.22 -0.38 -1.17 16 6 C -0.08 -1.08 5.17 -105.00 -0.54 -1.63 16 7 C -0.07 -0.93 4.64 -102.75 -0.48 -1.41 16 8 C -0.18 -2.08 8.98 -36.41 -0.33 -2.41 16 9 C 0.09 0.93 5.94 -5.27 -0.03 0.90 16 10 N -0.53 -6.72 5.13 -236.14 -1.21 -7.93 16 11 C 0.07 1.09 3.66 -3.82 -0.01 1.08 16 12 C -0.14 -2.24 3.62 -27.88 -0.10 -2.34 16 13 C 0.46 9.94 7.61 -10.99 -0.08 9.86 16 14 O -0.58 -14.45 15.62 5.54 0.09 -14.37 16 15 N -0.45 -10.23 2.60 -117.94 -0.31 -10.54 16 16 C -0.30 -7.61 9.45 -14.93 -0.14 -7.75 16 17 H 0.11 2.87 7.24 -52.49 -0.38 2.49 16 18 C 0.03 0.68 5.36 -17.47 -0.09 0.58 16 19 N -0.90 -21.98 8.07 55.50 0.45 -21.53 16 20 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C 0.22 4.40 5.02 -6.84 -0.03 4.36 16 25 C 0.26 5.70 13.09 -20.69 -0.27 5.43 16 26 N -0.49 -11.66 18.55 42.24 0.78 -10.88 16 27 C 0.05 0.60 5.41 -3.62 -0.02 0.58 16 28 C -0.12 -1.58 5.10 -28.02 -0.14 -1.73 16 29 C -0.06 -0.86 9.74 -39.22 -0.38 -1.24 16 30 C -0.20 -2.53 9.02 -39.49 -0.36 -2.88 16 31 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 32 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.11 1.17 7.98 -52.49 -0.42 0.75 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 39 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 40 H 0.05 0.83 5.84 -51.93 -0.30 0.52 16 41 H 0.08 1.28 5.37 -51.93 -0.28 1.00 16 42 H 0.09 1.30 7.53 -51.93 -0.39 0.90 16 43 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.08 1.15 6.42 -51.92 -0.33 0.81 16 45 H 0.14 2.85 6.36 -51.93 -0.33 2.52 16 46 H 0.09 1.03 6.50 -51.93 -0.34 0.69 16 47 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 48 H 0.08 1.28 6.24 -51.93 -0.32 0.96 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 51 H 0.13 1.38 6.28 -52.48 -0.33 1.05 16 LS Contribution 411.48 15.07 6.20 6.20 Total: -1.00 -30.59 411.48 -9.44 -40.03 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.15 Total: 7.26 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.06 Total: 0.55 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.29 Total: -50.87 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.12 Total: -18.17 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.59 -9.44 -40.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058367654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.163 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds