Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00318 * 2 1 4 4 H 1.48501 * 109.46866 * 239.99849 * 3 2 1 5 5 H 1.48498 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46985 * 119.99629 * 3 2 1 7 7 C 1.37885 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99666 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46852 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99885 * 269.99822 * 10 9 7 12 12 C 1.50695 * 109.47168 * 274.99357 * 11 10 9 13 13 C 1.34516 * 125.79448 * 89.99593 * 12 11 10 14 14 C 1.41376 * 106.84685 * 179.97438 * 13 12 11 15 15 C 1.34519 * 106.83971 * 0.02562 * 14 13 12 16 16 O 1.34304 * 108.41755 * 359.73442 * 15 14 13 17 17 C 1.34773 * 120.00198 * 89.99706 * 10 9 7 18 18 O 1.21639 * 120.00092 * 5.18280 * 17 10 9 19 19 C 1.47185 * 120.00078 * 185.18372 * 17 10 9 20 20 C 1.38796 * 120.90318 * 75.15952 * 19 17 10 21 21 C 1.41145 * 118.87645 * 179.97438 * 20 19 17 22 22 C 1.38476 * 120.67771 * 359.57212 * 21 20 19 23 23 N 1.34842 * 120.47946 * 0.69679 * 22 21 20 24 24 H 0.96995 * 119.02431 * 179.50259 * 23 22 21 25 25 C 1.34322 * 121.95411 * 359.49274 * 23 22 21 26 26 O 1.21801 * 120.09293 * 180.08882 * 25 23 22 27 27 C 1.50707 * 121.41130 * 181.02773 * 22 21 20 28 28 C 1.52564 * 111.34077 * 336.75023 * 27 22 21 29 29 C 1.53025 * 109.37330 * 54.71024 * 28 27 22 30 30 C 1.47293 * 118.96665 * 179.59989 * 21 20 19 31 31 O 1.21304 * 121.06610 * 348.51316 * 30 21 20 32 32 H 0.97001 * 119.99831 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47143 * 59.99700 * 9 7 2 34 34 H 1.09000 * 109.46899 * 299.99108 * 9 7 2 35 35 H 1.09002 * 109.47046 * 34.98949 * 11 10 9 36 36 H 1.08992 * 109.47334 * 154.99074 * 11 10 9 37 37 H 1.08007 * 126.57255 * 0.04058 * 13 12 11 38 38 H 1.07997 * 126.58699 * 179.97438 * 14 13 12 39 39 H 1.08001 * 125.79010 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.56588 * 359.97438 * 20 19 17 41 41 H 1.08996 * 109.10406 * 97.23182 * 27 22 21 42 42 H 1.09000 * 109.10746 * 216.33559 * 27 22 21 43 43 H 1.08992 * 109.50839 * 174.77117 * 28 27 22 44 44 H 1.09002 * 109.51160 * 294.87473 * 28 27 22 45 45 H 1.08999 * 109.89327 * 177.11021 * 29 28 27 46 46 H 1.08999 * 109.68379 * 56.11966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6788 -4.1696 -1.2682 12 6 1.6965 -5.1988 -1.7650 13 6 0.6442 -4.9589 -2.5678 14 6 0.0000 -6.1992 -2.7805 15 6 0.6968 -7.1230 -2.0945 16 8 1.7265 -6.5121 -1.4859 17 6 2.6408 -4.1250 1.1677 18 8 2.1758 -3.7274 2.2190 19 6 3.6818 -5.1655 1.1703 20 6 5.0090 -4.8466 0.9187 21 6 5.9723 -5.8782 0.9323 22 6 5.6035 -7.1857 1.2006 23 7 4.3135 -7.4971 1.4399 24 1 4.0777 -8.4209 1.6183 25 6 3.3454 -6.5660 1.4387 26 8 2.1910 -6.8849 1.6607 27 6 6.6215 -8.2962 1.2419 28 6 7.8657 -7.9391 0.4344 29 6 8.4258 -6.6037 0.9289 30 6 7.3799 -5.5434 0.6569 31 8 7.6908 -4.4547 0.2213 32 1 -0.4850 0.8401 -0.0004 33 1 0.6245 -2.5570 -0.8896 34 1 0.6240 -2.5567 0.8904 35 1 2.7709 -3.3705 -2.0038 36 1 3.6511 -4.6384 -1.1173 37 1 0.3488 -4.0023 -2.9731 38 1 -0.8827 -6.3720 -3.3783 39 1 0.4698 -8.1777 -2.0457 40 1 5.2998 -3.8265 0.7160 41 1 6.9085 -8.4787 2.2774 42 1 6.1778 -9.2025 0.8298 43 1 8.6170 -8.7187 0.5597 44 1 7.6030 -7.8527 -0.6200 45 1 9.3442 -6.3653 0.3924 46 1 8.6248 -6.6627 1.9989 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -57.739217 kcal Electronic energy + Delta-G solvation = -34405.704226 eV Core-core repulsion = 29841.661127 eV Total energy + Delta-G solvation = -4564.043099 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19774 -41.65041 -39.60526 -38.74742 -37.41964 -35.40248 -35.11862 -33.86454 -32.72009 -32.50680 -30.06226 -30.00253 -29.20796 -27.31840 -25.48887 -24.65893 -23.80339 -23.03038 -22.64988 -21.36618 -20.77500 -20.23631 -18.90097 -17.97208 -17.76430 -17.13389 -16.80560 -16.26468 -16.15699 -15.94719 -15.87910 -15.48811 -15.31857 -15.01177 -14.98355 -14.47121 -14.45148 -14.28853 -14.04698 -13.61433 -13.23048 -13.12722 -12.67349 -12.50951 -12.48881 -12.35094 -12.21686 -12.04222 -12.01272 -11.68252 -11.55686 -11.45062 -11.23344 -10.89574 -10.61994 -10.39591 -10.23574 -10.15351 -9.96583 -9.69069 -9.55431 -9.10775 -8.40422 -8.21425 -8.08338 -7.76422 -6.01005 -4.06574 0.28611 1.06344 2.01399 2.32005 2.37117 2.93093 3.13807 3.31148 3.35913 3.40025 3.43127 3.47573 3.65880 3.80326 3.96341 4.07342 4.25883 4.41252 4.48164 4.60254 4.73376 4.83890 4.96807 4.99049 5.02735 5.05030 5.22410 5.27746 5.33488 5.36710 5.42710 5.52388 5.57753 5.62140 5.85900 5.93104 5.97527 6.11861 6.27113 6.28716 6.40230 6.53865 6.83330 7.05938 7.30635 7.41802 7.50564 7.54780 7.79957 7.94687 8.24054 8.31359 8.88155 9.03616 9.58359 11.07107 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.003842 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.602004 B = 7286.705901 C = 9271.692274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.583 5.583 11 C 0.190 3.810 12 C -0.024 4.024 13 C -0.193 4.193 14 C -0.214 4.214 15 C -0.049 4.049 16 O -0.172 6.172 17 C 0.579 3.421 18 O -0.518 6.518 19 C -0.228 4.228 20 C 0.032 3.968 21 C -0.273 4.273 22 C 0.237 3.763 23 N -0.598 5.598 24 H 0.417 0.583 25 C 0.542 3.458 26 O -0.502 6.502 27 C -0.102 4.102 28 C -0.109 4.109 29 C -0.166 4.166 30 C 0.413 3.587 31 O -0.449 6.449 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.195 0.805 40 H 0.152 0.848 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.318 -22.892 -3.082 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.128 3.872 10 N -0.314 5.314 11 C 0.065 3.935 12 C -0.075 4.075 13 C -0.213 4.213 14 C -0.233 4.233 15 C -0.117 4.117 16 O -0.068 6.068 17 C 0.364 3.636 18 O -0.394 6.394 19 C -0.236 4.236 20 C 0.011 3.989 21 C -0.280 4.280 22 C 0.122 3.878 23 N -0.229 5.229 24 H 0.256 0.744 25 C 0.338 3.662 26 O -0.378 6.378 27 C -0.139 4.139 28 C -0.147 4.147 29 C -0.204 4.204 30 C 0.290 3.710 31 O -0.324 6.324 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.211 0.789 40 H 0.170 0.830 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.470 -22.082 -2.435 27.071 hybrid contribution -0.096 0.425 -0.053 0.439 sum 15.373 -21.656 -2.488 26.674 Atomic orbital electron populations 1.69933 1.06011 1.27155 1.49973 1.24919 0.94852 0.99156 0.94946 0.86561 0.79519 0.82668 0.78716 1.20136 1.21204 1.20123 1.21397 0.93397 0.90482 1.51730 0.92248 1.19375 0.87363 0.81396 0.99019 1.48214 1.45735 1.34486 1.02958 1.19879 0.93124 0.92184 0.88291 1.23175 1.01493 0.82170 1.00668 1.21681 0.96870 0.99476 1.03314 1.21783 1.03031 0.93054 1.05434 1.23862 0.90002 0.98731 0.99094 1.83998 1.43661 1.20346 1.58806 1.17294 0.81274 0.80474 0.84524 1.90793 1.56850 1.60664 1.31045 1.22092 0.95641 0.93380 1.12466 1.21867 0.89996 0.99950 0.87047 1.19628 0.97151 0.91760 1.19449 1.21111 0.84539 0.95207 0.86968 1.43353 1.06726 1.13632 1.59177 0.74401 1.17940 0.84537 0.85396 0.78316 1.90990 1.17691 1.81077 1.48090 1.20918 0.94068 0.95102 1.03827 1.21400 0.95940 0.96989 1.00414 1.22273 0.99074 0.94653 1.04369 1.22131 0.87889 0.87600 0.73374 1.90608 1.83536 1.24260 1.33950 0.92622 0.94523 0.93512 0.86592 0.90073 0.83196 0.83838 0.78870 0.82998 0.87407 0.88393 0.89041 0.90331 0.88183 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.71 5.22 -5.19 -0.03 6.68 16 10 N -0.58 -13.42 2.44 -177.80 -0.43 -13.85 16 11 C 0.19 3.49 5.89 -5.20 -0.03 3.46 16 12 C -0.02 -0.43 6.90 -35.63 -0.25 -0.67 16 13 C -0.19 -3.37 10.81 -39.70 -0.43 -3.80 16 14 C -0.21 -3.22 10.91 -39.70 -0.43 -3.66 16 15 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 16 O -0.17 -2.97 10.65 5.70 0.06 -2.91 16 17 C 0.58 13.70 6.80 -12.63 -0.09 13.61 16 18 O -0.52 -14.57 16.66 5.24 0.09 -14.49 16 19 C -0.23 -4.18 4.36 -102.72 -0.45 -4.62 16 20 C 0.03 0.49 8.30 -38.27 -0.32 0.17 16 21 C -0.27 -2.97 5.82 -105.03 -0.61 -3.59 16 22 C 0.24 1.84 6.73 -81.18 -0.55 1.29 16 23 N -0.60 -5.92 5.14 -9.18 -0.05 -5.97 16 24 H 0.42 2.73 8.66 -40.82 -0.35 2.38 16 25 C 0.54 8.90 7.88 -13.13 -0.10 8.79 16 26 O -0.50 -10.25 17.51 5.10 0.09 -10.16 16 27 C -0.10 -0.26 5.74 -28.10 -0.16 -0.43 16 28 C -0.11 -0.28 5.89 -26.94 -0.16 -0.43 16 29 C -0.17 -0.81 6.17 -27.53 -0.17 -0.98 16 30 C 0.41 4.12 6.88 -30.28 -0.21 3.91 16 31 O -0.45 -6.31 17.21 5.54 0.10 -6.21 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.05 1.46 7.36 -51.93 -0.38 1.07 16 35 H 0.12 2.02 8.11 -51.93 -0.42 1.59 16 36 H 0.08 1.31 5.76 -51.93 -0.30 1.01 16 37 H 0.15 2.56 8.06 -52.48 -0.42 2.13 16 38 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.15 2.42 7.70 -52.49 -0.40 2.01 16 41 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -41.20 399.77 -8.08 -49.28 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.63 Total: 1.71 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -4.04 Total: 5.66 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.26 Total: -45.94 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: 0.33 Total: -33.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -41.20 -8.08 -49.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -41.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds