Wall clock time and date at job start Tue Mar 31 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 119.99926 * 2 1 4 4 H 1.48499 * 109.47069 * 240.00116 * 3 2 1 5 5 H 1.48497 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46948 * 120.00252 * 3 2 1 7 7 C 1.38648 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99728 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.35612 * 116.99684 * 185.08031 * 9 7 2 11 11 C 1.38726 * 120.15718 * 354.41690 * 10 9 7 12 12 C 1.38112 * 120.08245 * 179.97438 * 11 10 9 13 13 C 1.38529 * 120.40807 * 0.02562 * 12 11 10 14 14 C 1.37891 * 120.31344 * 359.97438 * 13 12 11 15 15 C 1.39684 * 119.90875 * 0.02562 * 14 13 12 16 16 C 1.47305 * 120.19611 * 179.72487 * 15 14 13 17 17 N 1.29848 * 119.99409 * 180.02562 * 16 15 14 18 18 N 1.40104 * 119.99284 * 180.02562 * 17 16 15 19 19 C 1.34778 * 119.99333 * 179.97438 * 18 17 16 20 20 O 1.21307 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99474 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.46979 * 180.02562 * 21 19 18 23 23 C 1.38230 * 120.00283 * 269.73204 * 22 21 19 24 24 C 1.38237 * 120.00113 * 179.76464 * 23 22 21 25 25 C 1.38242 * 119.99985 * 0.48626 * 24 23 22 26 26 N 1.48019 * 120.00153 * 179.76614 * 25 24 23 27 27 O 1.21790 * 119.99904 * 180.02562 * 26 25 24 28 28 O 1.21803 * 119.99564 * 0.02730 * 26 25 24 29 29 C 1.38232 * 119.99356 * 359.78995 * 25 24 23 30 30 C 1.38233 * 120.00730 * 359.95272 * 29 25 24 31 31 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.95885 * 359.95610 * 11 10 9 33 33 H 1.08002 * 119.79648 * 180.02562 * 12 11 10 34 34 H 1.07999 * 119.84344 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.04192 * 180.02562 * 14 13 12 36 36 H 1.07995 * 119.99933 * 0.02562 * 16 15 14 37 37 H 0.96993 * 120.00251 * 359.97438 * 18 17 16 38 38 H 1.08997 * 109.47545 * 300.00355 * 21 19 18 39 39 H 1.09005 * 109.46894 * 60.00649 * 21 19 18 40 40 H 1.08002 * 120.00264 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.00295 * 180.25655 * 24 23 22 42 42 H 1.08001 * 119.99522 * 179.97438 * 29 25 24 43 43 H 1.07997 * 120.00181 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6963 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0693 -3.5031 0.1059 11 6 3.4550 -3.4403 0.0921 12 6 4.2016 -4.5971 0.2012 13 6 3.5755 -5.8267 0.3244 14 6 2.1991 -5.9084 0.3400 15 6 1.4311 -4.7467 0.2306 16 6 -0.0397 -4.8272 0.2404 17 7 -0.7497 -3.7449 0.1379 18 7 -2.1486 -3.8215 0.1478 19 6 -2.8856 -2.6980 0.0420 20 8 -2.3378 -1.6207 -0.0623 21 6 -4.3904 -2.7804 0.0521 22 6 -4.9701 -1.3956 -0.0795 23 6 -5.2395 -0.6486 1.0520 24 6 -5.7667 0.6235 0.9311 25 6 -6.0340 1.1448 -0.3211 26 7 -6.6034 2.5050 -0.4504 27 8 -6.8393 2.9641 -1.5535 28 8 -6.8359 3.1651 0.5465 29 6 -5.7699 0.3956 -1.4523 30 6 -5.2378 -0.8745 -1.3316 31 1 -0.4850 0.8400 -0.0004 32 1 3.9507 -2.4856 -0.0043 33 1 5.2802 -4.5428 0.1904 34 1 4.1682 -6.7255 0.4095 35 1 1.7155 -6.8692 0.4366 36 1 -0.5273 -5.7863 0.3328 37 1 -2.5866 -4.6829 0.2308 38 1 -4.7263 -3.3953 -0.7828 39 1 -4.7236 -3.2266 0.9891 40 1 -5.0340 -1.0572 2.0304 41 1 -5.9733 1.2087 1.8150 42 1 -5.9792 0.8027 -2.4305 43 1 -5.0311 -1.4596 -2.2155 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059147749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:27 Heat of formation + Delta-G solvation = 49.408695 kcal Electronic energy + Delta-G solvation = -31791.834484 eV Core-core repulsion = 27194.323235 eV Total energy + Delta-G solvation = -4597.511250 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.120 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18593 -40.03353 -39.04819 -38.55329 -36.57774 -36.37537 -35.69075 -33.44309 -32.39592 -32.03880 -31.53990 -29.89837 -29.01672 -28.25261 -25.56633 -25.28963 -23.34466 -23.21335 -21.93898 -21.53837 -20.13567 -19.97754 -19.41118 -18.68857 -17.89010 -17.54210 -17.35999 -16.56252 -16.36040 -15.92262 -15.82536 -14.95122 -14.84109 -14.59535 -14.44944 -14.11052 -13.98159 -13.78777 -13.62897 -13.48704 -12.97715 -12.70541 -12.52974 -12.42700 -12.26387 -11.74884 -11.63295 -11.60064 -11.47159 -11.19526 -11.16071 -11.11602 -10.83751 -10.81028 -10.71304 -10.42139 -9.66707 -9.55743 -9.48920 -9.30127 -9.02008 -8.97442 -8.72047 -7.74396 -6.99745 -6.23850 -3.87660 -0.21659 0.86773 1.28252 1.39413 1.63431 2.42028 2.86439 2.88593 3.17906 3.18853 3.21596 3.30950 3.49558 4.02099 4.20955 4.23347 4.38692 4.65595 4.68635 4.79416 4.86681 5.10176 5.14136 5.15510 5.21872 5.22967 5.31289 5.50907 5.50944 5.61657 5.64823 5.67316 5.84864 6.03790 6.05152 6.13095 6.22211 6.42509 6.46111 6.70617 6.83486 7.10585 7.21028 7.37239 7.39854 7.62637 7.62744 7.81541 8.03735 8.23883 9.03694 9.10278 9.77910 10.80740 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.002598 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.233568 B =10773.899624 C =12977.151854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.046 3.954 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.408 4.408 8 H 0.088 0.912 9 O -0.114 6.114 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.230 4.230 14 C -0.043 4.043 15 C -0.150 4.150 16 C 0.099 3.901 17 N -0.184 5.184 18 N -0.596 5.596 19 C 0.500 3.500 20 O -0.425 6.425 21 C -0.106 4.106 22 C -0.003 4.003 23 C -0.101 4.101 24 C -0.051 4.051 25 C -0.048 4.048 26 N 0.032 4.968 27 O -0.166 6.166 28 O -0.166 6.166 29 C -0.051 4.051 30 C -0.101 4.101 31 H 0.267 0.733 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.366 0.634 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -9.475 0.636 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.165 4.165 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.106 0.894 9 O -0.010 6.010 10 C 0.103 3.897 11 C -0.256 4.256 12 C -0.080 4.080 13 C -0.249 4.249 14 C -0.064 4.064 15 C -0.154 4.154 16 C -0.110 4.110 17 N 0.010 4.990 18 N -0.339 5.339 19 C 0.283 3.717 20 O -0.290 6.290 21 C -0.148 4.148 22 C -0.004 4.004 23 C -0.120 4.120 24 C -0.070 4.070 25 C -0.131 4.131 26 N 0.550 4.450 27 O -0.381 6.381 28 O -0.381 6.381 29 C -0.071 4.071 30 C -0.120 4.120 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.202 0.798 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.794 -7.981 0.490 13.433 hybrid contribution 0.168 -0.242 0.106 0.313 sum -10.626 -8.223 0.596 13.449 Atomic orbital electron populations 1.70254 1.04738 1.27067 1.39584 1.25330 0.95891 0.98342 0.96913 0.86026 0.78966 0.80802 0.79076 1.19636 1.20448 1.19629 1.21294 0.91611 0.81213 1.54312 0.89435 1.84166 1.33154 1.10739 1.72939 1.19442 0.89957 0.87840 0.92417 1.21126 0.93700 0.99063 1.11740 1.20843 0.98440 0.92433 0.96282 1.20399 0.94034 0.96940 1.13553 1.20631 0.93503 0.95446 0.96773 1.17318 0.88958 0.91614 1.17546 1.24234 0.94032 0.93451 0.99264 1.75937 0.87077 1.24026 1.11986 1.47119 1.03487 1.08672 1.74621 1.20041 0.87333 0.84638 0.79732 1.91143 1.71449 1.25768 1.40605 1.20797 0.93554 0.94687 1.05753 1.19736 0.92269 0.95079 0.93329 1.21040 0.98359 0.92990 0.99562 1.20983 0.94510 0.95573 0.95953 1.21092 1.10573 0.84350 0.97119 1.43635 0.98149 1.02815 1.00351 1.94520 1.55896 1.74019 1.13687 1.94524 1.56010 1.58982 1.28613 1.20977 0.94547 0.93445 0.98090 1.21037 0.98369 0.94634 0.97949 0.92271 0.85507 0.87599 0.87547 0.86939 0.88352 0.79771 0.87452 0.87450 0.83654 0.83031 0.83038 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.96 12.59 55.48 0.70 -22.26 16 2 C 0.05 1.27 5.49 -17.52 -0.10 1.18 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.41 -11.33 9.49 30.88 0.29 -11.04 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.11 -3.15 7.64 0.55 0.00 -3.15 16 10 C 0.16 3.89 6.66 -38.62 -0.26 3.63 16 11 C -0.24 -5.06 9.16 -39.45 -0.36 -5.42 16 12 C -0.06 -1.08 10.03 -39.52 -0.40 -1.47 16 13 C -0.23 -3.74 10.03 -39.60 -0.40 -4.14 16 14 C -0.04 -0.70 9.79 -39.17 -0.38 -1.09 16 15 C -0.15 -3.00 5.88 -104.88 -0.62 -3.62 16 16 C 0.10 1.80 10.75 -14.70 -0.16 1.65 16 17 N -0.18 -3.91 8.90 32.13 0.29 -3.62 16 18 N -0.60 -9.56 6.26 31.22 0.20 -9.36 16 19 C 0.50 8.23 7.94 -10.98 -0.09 8.15 16 20 O -0.43 -9.71 15.29 5.53 0.08 -9.63 16 21 C -0.11 -1.02 5.83 -29.03 -0.17 -1.19 16 22 C 0.00 -0.04 4.37 -104.63 -0.46 -0.49 16 23 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 24 C -0.05 -0.61 9.56 -39.58 -0.38 -0.99 16 25 C -0.05 -0.65 6.85 -79.95 -0.55 -1.20 16 26 N 0.03 0.49 4.45 33.96 0.15 0.64 16 27 O -0.17 -2.59 18.45 -29.46 -0.54 -3.13 16 28 O -0.17 -2.59 18.45 -29.46 -0.54 -3.14 16 29 C -0.05 -0.61 9.55 -39.59 -0.38 -0.99 16 30 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.10 1.31 8.02 -52.49 -0.42 0.89 16 37 H 0.37 4.00 8.65 -182.60 -1.58 2.42 16 38 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 1.59 7.61 -52.49 -0.40 1.19 16 42 H 0.15 1.57 7.61 -52.49 -0.40 1.17 16 43 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -36.77 391.19 -9.41 -46.19 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.46 Total: 5.71 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -5.16 Total: -20.05 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 1.33 Total: -34.61 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.00 Total: -19.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.77 -9.41 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059147749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.595 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds