Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48510 * 109.47052 * 240.00297 * 3 2 1 5 5 H 1.48495 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46956 * 120.00642 * 3 2 1 7 7 C 1.38642 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35651 * 117.00043 * 185.05629 * 9 7 2 11 11 C 1.39084 * 119.91298 * 354.45068 * 10 9 7 12 12 C 1.37715 * 120.09126 * 180.02562 * 11 10 9 13 13 C 1.39811 * 119.90774 * 359.97438 * 12 11 10 14 14 C 1.47361 * 120.08672 * 179.97438 * 13 12 11 15 15 N 1.29826 * 120.00219 * 179.97438 * 14 13 12 16 16 N 1.40100 * 120.00408 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00442 * 180.02562 * 16 15 14 18 18 O 1.21309 * 119.99698 * 0.02562 * 17 16 15 19 19 C 1.50691 * 120.00047 * 180.02562 * 17 16 15 20 20 S 1.81405 * 109.47250 * 180.02562 * 19 17 16 21 21 C 1.81402 * 103.00177 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47052 * 179.97438 * 21 20 19 23 23 C 1.38235 * 119.99884 * 269.72593 * 22 21 20 24 24 C 1.38235 * 119.99522 * 179.76388 * 23 22 21 25 25 C 1.38237 * 120.00244 * 0.51369 * 24 23 22 26 26 C 1.38230 * 119.99748 * 359.73887 * 25 24 23 27 27 C 1.38234 * 120.00278 * 0.02562 * 26 25 24 28 28 C 1.39812 * 119.83012 * 359.97438 * 13 12 11 29 29 C 1.37717 * 119.90848 * 0.03146 * 28 13 12 30 30 H 0.97000 * 120.00559 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.95683 * 0.02562 * 11 10 9 32 32 H 1.07993 * 120.04856 * 179.69898 * 12 11 10 33 33 H 1.08001 * 119.99679 * 359.97438 * 14 13 12 34 34 H 0.97004 * 119.99404 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.47462 * 300.00112 * 19 17 16 36 36 H 1.08998 * 109.47274 * 59.99922 * 19 17 16 37 37 H 1.09002 * 109.47013 * 299.99809 * 21 20 19 38 38 H 1.09003 * 109.46675 * 59.99778 * 21 20 19 39 39 H 1.07995 * 120.00100 * 0.02562 * 23 22 21 40 40 H 1.08006 * 119.99820 * 180.22923 * 24 23 22 41 41 H 1.07998 * 119.99635 * 179.72419 * 25 24 23 42 42 H 1.08007 * 119.99867 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.99935 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.04974 * 180.02562 * 28 13 12 45 45 H 1.08005 * 119.95512 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0696 -3.5034 0.1054 11 6 3.4587 -3.4344 0.0913 12 6 4.2083 -4.5848 0.1981 13 6 3.5711 -5.8231 0.3215 14 6 4.3693 -7.0565 0.4355 15 7 3.7759 -8.2055 0.5504 16 7 4.5347 -9.3783 0.6583 17 6 3.9187 -10.5711 0.7771 18 8 2.7071 -10.6293 0.7902 19 6 4.7350 -11.8324 0.8937 20 16 3.6250 -13.2600 1.0375 21 6 4.7732 -14.6586 1.1645 22 6 3.9913 -15.9404 1.2929 23 6 3.6453 -16.4166 2.5437 24 6 2.9238 -17.5898 2.6612 25 6 2.5574 -18.2924 1.5285 26 6 2.9079 -17.8189 0.2780 27 6 3.6252 -16.6431 0.1602 28 6 2.1745 -5.8882 0.3364 29 6 1.4321 -4.7333 0.2290 30 1 -0.4851 0.8400 0.0004 31 1 3.9502 -2.4774 -0.0036 32 1 5.2868 -4.5309 0.1821 33 1 5.4480 -7.0047 0.4234 34 1 5.5036 -9.3317 0.6474 35 1 5.3583 -11.9451 0.0066 36 1 5.3692 -11.7743 1.7783 37 1 5.3955 -14.7001 0.2706 38 1 5.4064 -14.5301 2.0424 39 1 3.9350 -15.8698 3.4288 40 1 2.6503 -17.9600 3.6383 41 1 1.9976 -19.2114 1.6206 42 1 2.6221 -18.3680 -0.6070 43 1 3.8994 -16.2734 -0.8168 44 1 1.6786 -6.8428 0.4319 45 1 0.3532 -4.7827 0.2408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059472801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = 33.161694 kcal Electronic energy + Delta-G solvation = -26860.006095 eV Core-core repulsion = 22742.657626 eV Total energy + Delta-G solvation = -4117.348469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.68577 -39.56672 -39.10494 -37.13439 -35.84359 -33.31814 -32.79706 -32.26667 -31.32315 -30.38858 -30.26659 -28.22909 -27.44078 -25.61702 -23.07926 -23.01533 -22.11240 -21.89509 -20.84595 -20.27700 -18.23767 -17.79256 -17.26465 -17.13710 -16.73811 -16.29163 -16.01914 -15.62604 -15.59968 -15.08280 -14.64753 -14.43543 -14.32311 -14.13893 -13.93225 -13.80450 -13.65492 -13.57607 -13.41390 -13.06139 -12.83931 -12.67043 -12.48282 -12.38019 -11.80244 -11.58595 -11.46231 -11.34126 -11.23980 -10.94540 -10.82527 -10.54540 -10.44437 -10.24543 -9.97465 -9.45916 -9.34402 -9.26960 -9.10219 -8.78120 -8.30598 -8.00178 -7.14323 -6.59406 -4.16010 0.48924 0.98746 1.31752 1.35260 2.12922 2.19602 2.37824 2.51560 2.98145 3.06046 3.10433 3.13384 3.42833 3.85813 4.12168 4.26023 4.27711 4.51662 4.55078 4.58339 4.69851 4.70185 4.70358 4.83637 4.95913 4.98044 5.07762 5.08153 5.17417 5.18853 5.52907 5.54292 5.60743 5.73335 5.90741 6.01873 6.09270 6.11210 6.12744 6.32361 6.54857 6.60643 6.78739 6.92558 6.96380 7.15803 7.17901 7.30795 7.54997 7.68775 7.85260 8.38209 8.84972 9.52632 10.57308 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.034663 B = 0.001093 C = 0.001073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.582024 B =25601.173633 C =26089.591549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.164 6.164 10 C 0.170 3.830 11 C -0.242 4.242 12 C -0.033 4.033 13 C -0.176 4.176 14 C 0.153 3.847 15 N -0.267 5.267 16 N -0.585 5.585 17 C 0.544 3.456 18 O -0.485 6.485 19 C -0.131 4.131 20 S -0.158 6.158 21 C -0.070 4.070 22 C -0.073 4.073 23 C -0.101 4.101 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.101 4.101 28 C -0.024 4.024 29 C -0.201 4.201 30 H 0.274 0.726 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.378 0.622 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.036 -30.251 2.530 33.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.065 6.065 10 C 0.113 3.887 11 C -0.262 4.262 12 C -0.054 4.054 13 C -0.180 4.180 14 C -0.054 4.054 15 N -0.072 5.072 16 N -0.326 5.326 17 C 0.328 3.672 18 O -0.356 6.356 19 C -0.283 4.283 20 S 0.070 5.930 21 C -0.217 4.217 22 C -0.074 4.074 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.121 4.121 28 C -0.044 4.044 29 C -0.220 4.220 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.215 0.785 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.807 -30.628 2.583 32.927 hybrid contribution 3.414 1.206 -0.062 3.622 sum 15.221 -29.422 2.521 33.222 Atomic orbital electron populations 1.70028 1.06093 1.28259 1.44255 1.25365 0.95878 0.99076 0.96105 0.85735 0.78755 0.79392 0.79333 1.19315 1.20131 1.19313 1.21386 0.92014 0.80647 1.52947 0.88657 1.83944 1.34850 1.11733 1.75983 1.19598 0.90342 0.87898 0.90861 1.21036 0.93627 0.98911 1.12577 1.20768 0.98343 0.91014 0.95255 1.17776 0.92732 0.89717 1.17793 1.24459 0.97037 0.90877 0.93041 1.75187 1.22007 0.92240 1.17799 1.46777 1.07698 1.04496 1.73670 1.19341 0.88398 0.82241 0.77218 1.90789 1.13447 1.85571 1.45753 1.23485 1.02151 0.95479 1.07196 1.88010 1.11240 0.96654 1.97058 1.22459 0.99432 0.94126 1.05696 1.19142 0.99909 0.94427 0.93946 1.21074 0.97960 0.96223 0.96827 1.21165 0.98457 0.95355 0.98860 1.21227 0.99592 0.99928 0.92686 1.21163 0.98538 0.96400 0.97739 1.21075 0.97908 0.95001 0.98098 1.20917 0.92503 0.97372 0.93647 1.20206 0.99971 0.90050 1.11797 0.91616 0.85054 0.86905 0.87569 0.78452 0.86984 0.86980 0.89067 0.89070 0.85727 0.85785 0.85939 0.85786 0.85726 0.85645 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.15 13.67 55.48 0.76 -23.39 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.39 -10.49 9.48 30.88 0.29 -10.20 16 8 H 0.10 2.30 5.19 -52.49 -0.27 2.03 16 9 O -0.16 -4.52 9.75 0.43 0.00 -4.51 16 10 C 0.17 3.94 6.65 -38.96 -0.26 3.68 16 11 C -0.24 -4.87 9.15 -39.46 -0.36 -5.23 16 12 C -0.03 -0.55 9.78 -39.18 -0.38 -0.93 16 13 C -0.18 -2.97 5.87 -105.01 -0.62 -3.59 16 14 C 0.15 2.13 10.74 -14.69 -0.16 1.97 16 15 N -0.27 -4.15 10.15 32.14 0.33 -3.82 16 16 N -0.58 -6.93 6.26 31.22 0.20 -6.73 16 17 C 0.54 7.01 7.97 -10.99 -0.09 6.92 16 18 O -0.48 -8.79 16.20 5.53 0.09 -8.70 16 19 C -0.13 -1.02 6.42 36.00 0.23 -0.79 16 20 S -0.16 -1.59 20.86 -107.50 -2.24 -3.83 16 21 C -0.07 -0.44 6.07 36.00 0.22 -0.22 16 22 C -0.07 -0.54 5.14 -104.63 -0.54 -1.08 16 23 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 24 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 25 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 26 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 27 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 28 C -0.02 -0.45 9.57 -39.18 -0.37 -0.83 16 29 C -0.20 -4.23 9.97 -39.46 -0.39 -4.62 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.13 2.59 5.62 -52.49 -0.29 2.29 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.05 8.02 -52.49 -0.42 0.63 16 34 H 0.38 2.81 8.65 -182.59 -1.58 1.23 16 35 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.44 8.09 -51.92 -0.42 0.02 16 38 H 0.09 0.44 8.08 -51.92 -0.42 0.02 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.13 2.32 7.55 -52.49 -0.40 1.92 16 45 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -34.81 411.82 -10.92 -45.73 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.74 Total: 4.22 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -4.49 Total: -19.65 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 1.28 Total: -33.95 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.24 Total: -3.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.81 -10.92 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059472801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.888 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds