Wall clock time and date at job start Tue Mar 31 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48502 * 109.46675 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46883 * 299.99052 * 3 2 1 6 6 H 1.48494 * 109.47278 * 59.99873 * 3 2 1 7 7 C 1.38802 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99964 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00125 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47077 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99680 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99855 * 179.97438 * 13 11 10 15 15 C 1.50692 * 109.46943 * 179.97438 * 14 13 11 16 16 C 1.38329 * 119.87823 * 90.00323 * 15 14 13 17 17 C 1.38008 * 120.12162 * 179.97438 * 16 15 14 18 18 C 1.39357 * 119.87890 * 0.02562 * 17 16 15 19 19 C 1.48364 * 120.11874 * 179.97438 * 18 17 16 20 20 C 1.39398 * 120.24608 * 0.02562 * 19 18 17 21 21 C 1.37675 * 120.22151 * 180.45048 * 20 19 18 22 22 C 1.39420 * 120.40437 * 359.53356 * 21 20 19 23 23 C 1.39013 * 119.06720 * 0.15727 * 22 21 20 24 24 C 1.37519 * 120.90809 * 0.18427 * 23 22 21 25 25 C 1.51668 * 107.02351 * 180.44477 * 23 22 21 26 26 C 1.54695 * 101.91799 * 15.49668 * 25 23 22 27 27 O 1.36146 * 129.73470 * 179.54963 * 22 21 20 28 28 C 1.39348 * 119.75523 * 0.25260 * 18 17 16 29 29 C 1.38017 * 119.87394 * 359.45098 * 28 18 17 30 30 H 0.97004 * 120.00157 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47353 * 59.99599 * 10 9 7 32 32 H 1.08999 * 109.47194 * 300.00437 * 10 9 7 33 33 H 0.96998 * 120.00540 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.46828 * 60.00074 * 14 13 11 35 35 H 1.08994 * 109.46921 * 300.00076 * 14 13 11 36 36 H 1.07993 * 119.93441 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.05749 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.88477 * 0.16502 * 20 19 18 39 39 H 1.08009 * 119.79420 * 179.76594 * 21 20 19 40 40 H 1.07996 * 120.05414 * 179.76072 * 24 23 22 41 41 H 1.09006 * 110.94080 * 133.65452 * 25 23 22 42 42 H 1.08999 * 110.94059 * 257.30620 * 25 23 22 43 43 H 1.09001 * 110.74702 * 92.97155 * 26 25 23 44 44 H 1.09001 * 110.74621 * 216.12679 * 26 25 23 45 45 H 1.08000 * 120.05989 * 179.72142 * 28 18 17 46 46 H 1.08002 * 119.93782 * 180.29951 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0033 14 6 2.3304 -7.7151 0.0034 15 6 3.4848 -8.6837 0.0046 16 6 4.0118 -9.1262 1.2046 17 6 5.0687 -10.0137 1.2116 18 6 5.6053 -10.4636 0.0068 19 6 6.7419 -11.4172 0.0080 20 6 7.2785 -11.8685 1.2129 21 6 8.3392 -12.7462 1.2135 22 6 8.8805 -13.1996 0.0113 23 6 8.3364 -12.7505 -1.1864 24 6 7.2814 -11.8684 -1.1962 25 6 9.1151 -13.4157 -2.3050 26 6 9.8449 -14.5538 -1.5533 27 8 9.9204 -14.0504 -0.2088 28 6 5.0743 -10.0100 -1.1991 29 6 4.0134 -9.1273 -1.1943 30 1 -0.4850 0.8401 -0.0004 31 1 3.1238 -3.7309 0.8925 32 1 3.1252 -3.7317 -0.8874 33 1 3.8009 -6.1835 0.0043 34 1 1.7228 -7.8756 -0.8872 35 1 1.7208 -7.8747 0.8928 36 1 3.5954 -8.7765 2.1377 37 1 5.4791 -10.3588 2.1491 38 1 6.8637 -11.5248 2.1489 39 1 8.7520 -13.0885 2.1510 40 1 6.8718 -11.5254 -2.1347 41 1 8.4422 -13.8180 -3.0625 42 1 9.8284 -12.7216 -2.7494 43 1 9.2633 -15.4750 -1.5886 44 1 10.8414 -14.7122 -1.9658 45 1 5.4894 -10.3520 -2.1357 46 1 3.5978 -8.7789 -2.1283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061335498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:31 Heat of formation + Delta-G solvation = -21.138978 kcal Electronic energy + Delta-G solvation = -27687.780176 eV Core-core repulsion = 23633.502964 eV Total energy + Delta-G solvation = -4054.277212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 369.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58765 -40.03636 -38.99826 -37.72917 -34.82129 -33.28436 -32.48486 -32.41654 -31.43009 -30.14620 -29.68179 -28.64777 -25.85474 -25.37222 -24.26820 -23.03698 -22.85416 -21.74390 -20.85673 -20.37630 -18.10022 -17.86641 -17.43909 -16.95432 -16.70297 -16.32053 -16.04019 -15.57732 -15.27809 -14.86444 -14.79912 -14.50734 -14.35154 -14.05608 -13.97219 -13.76133 -13.65610 -13.58408 -13.27467 -13.07947 -12.90370 -12.77716 -12.53848 -12.39020 -12.29121 -11.80089 -11.58874 -11.45896 -11.38590 -11.06628 -11.01252 -10.97273 -10.75344 -9.81118 -9.72456 -9.41678 -9.26821 -9.25637 -9.07300 -8.89068 -8.22571 -8.06676 -6.49245 -6.21271 -3.91604 0.23901 0.82735 1.10570 1.40738 2.72976 2.99104 3.10412 3.17113 3.22040 3.29699 3.35882 3.61268 3.82373 3.90585 3.98354 4.20913 4.21876 4.32164 4.42633 4.47265 4.54632 4.63140 4.73709 4.80789 4.83175 4.98751 5.09632 5.14048 5.15602 5.16760 5.18261 5.20093 5.44552 5.46431 5.52196 5.58826 5.73873 5.75796 5.82097 5.85050 5.88263 5.90464 6.02903 6.13206 6.15517 6.32511 6.33502 6.57743 6.63326 6.67959 7.60616 7.71806 8.36119 8.61343 9.24314 10.86237 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.001302 C = 0.001268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.626593 B =21495.449328 C =22078.172420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.161 3.839 15 C -0.101 4.101 16 C -0.095 4.095 17 C -0.114 4.114 18 C -0.035 4.035 19 C -0.071 4.071 20 C -0.074 4.074 21 C -0.134 4.134 22 C 0.105 3.895 23 C -0.173 4.173 24 C -0.059 4.059 25 C -0.111 4.111 26 C 0.051 3.949 27 O -0.305 6.305 28 C -0.115 4.115 29 C -0.096 4.096 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.125 0.875 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.994 -31.532 -2.173 37.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.390 5.390 14 C 0.037 3.963 15 C -0.102 4.102 16 C -0.114 4.114 17 C -0.132 4.132 18 C -0.036 4.036 19 C -0.071 4.071 20 C -0.092 4.092 21 C -0.153 4.153 22 C 0.060 3.940 23 C -0.174 4.174 24 C -0.077 4.077 25 C -0.148 4.148 26 C -0.024 4.024 27 O -0.219 6.219 28 C -0.133 4.133 29 C -0.114 4.114 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.143 0.857 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.990 -31.839 -2.037 36.627 hybrid contribution 2.444 1.296 -0.200 2.774 sum 20.434 -30.543 -2.237 36.817 Atomic orbital electron populations 1.70027 1.05953 1.27336 1.46981 1.24988 0.95014 0.99015 0.94537 0.86121 0.79599 0.81902 0.77899 1.19621 1.20565 1.20565 1.22915 0.94958 0.91653 1.58808 0.90872 1.85392 1.04950 0.96336 1.96714 1.23531 1.06558 0.95304 1.04969 1.20332 0.86501 0.86242 0.75128 1.90704 1.15351 1.85560 1.47564 1.46078 1.10076 1.04888 1.77934 1.20141 0.93098 0.79807 1.03217 1.20024 0.97932 0.98772 0.93450 1.21073 0.95827 0.96596 0.97886 1.21187 0.96754 0.97917 0.97341 1.18678 0.94818 0.96433 0.93630 1.18610 0.96841 0.98761 0.92903 1.20979 0.94683 0.95510 0.97987 1.20196 0.97937 1.01418 0.95749 1.19691 0.88108 0.91652 0.94558 1.20685 0.99837 1.02271 0.94602 1.20356 0.94120 0.95197 0.98021 1.21815 0.98801 0.97110 0.97074 1.23842 1.02455 0.96658 0.79427 1.86834 1.43319 1.58924 1.32806 1.21179 0.96767 0.98007 0.97326 1.21069 0.95788 0.96656 0.97893 0.92241 0.89196 0.89215 0.76702 0.90714 0.90688 0.85386 0.85568 0.84590 0.85093 0.85300 0.88872 0.88964 0.90414 0.87459 0.85713 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 12 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 13 N -0.73 -9.85 5.55 -61.47 -0.34 -10.19 16 14 C 0.16 1.88 5.79 -5.19 -0.03 1.85 16 15 C -0.10 -0.96 5.25 -104.56 -0.55 -1.51 16 16 C -0.10 -0.83 9.68 -39.63 -0.38 -1.22 16 17 C -0.11 -0.92 9.43 -39.25 -0.37 -1.29 16 18 C -0.04 -0.30 5.88 -104.90 -0.62 -0.91 16 19 C -0.07 -0.57 5.88 -104.84 -0.62 -1.19 16 20 C -0.07 -0.54 9.41 -39.36 -0.37 -0.91 16 21 C -0.13 -1.03 10.05 -39.35 -0.40 -1.42 16 22 C 0.11 0.89 7.04 -38.85 -0.27 0.62 16 23 C -0.17 -1.30 6.26 -104.12 -0.65 -1.95 16 24 C -0.06 -0.44 9.41 -39.39 -0.37 -0.81 16 25 C -0.11 -0.52 7.12 -26.51 -0.19 -0.71 16 26 C 0.05 0.23 8.01 38.05 0.30 0.54 16 27 O -0.30 -2.52 11.10 -20.20 -0.22 -2.74 16 28 C -0.11 -0.93 9.43 -39.25 -0.37 -1.30 16 29 C -0.10 -0.84 9.68 -39.63 -0.38 -1.22 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.40 4.41 8.46 -40.82 -0.35 4.06 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 0.76 6.22 -52.49 -0.33 0.43 16 38 H 0.14 0.72 6.21 -52.49 -0.33 0.39 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.13 0.75 6.22 -52.49 -0.33 0.42 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.13 0.78 6.22 -52.49 -0.33 0.45 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -36.01 403.14 -11.68 -47.69 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.84 Total: 1.19 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -4.93 Total: -17.47 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.39 Total: -35.66 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.14 Total: -14.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.01 -11.68 -47.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061335498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.546 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds