Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00383 * 2 1 4 4 C 1.38730 * 120.05353 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94025 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05736 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94481 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47107 * 339.99437 * 7 6 5 9 9 O 1.42909 * 109.46819 * 219.99953 * 7 6 5 10 10 C 1.52997 * 109.46984 * 100.00205 * 7 6 5 11 11 N 1.46503 * 109.47004 * 185.00111 * 10 7 6 12 12 C 1.38107 * 119.99962 * 179.97438 * 11 10 7 13 13 N 1.32858 * 120.81448 * 359.97323 * 12 11 10 14 14 C 1.32123 * 121.19451 * 180.02562 * 13 12 11 15 15 N 1.31510 * 122.64648 * 0.02562 * 14 13 12 16 16 C 1.33199 * 120.68256 * 0.02562 * 15 14 13 17 17 C 1.40818 * 120.81214 * 179.97438 * 12 11 10 18 18 C 1.41168 * 134.69640 * 0.03213 * 17 12 11 19 19 N 1.30249 * 108.46928 * 180.20253 * 18 17 12 20 20 N 1.36308 * 134.61923 * 179.97438 * 16 15 14 21 21 C 1.46510 * 125.87260 * 0.07553 * 20 16 15 22 22 C 1.50695 * 109.46809 * 90.00139 * 21 20 16 23 23 H 1.07999 * 120.00635 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99588 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99924 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00012 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47133 * 90.00704 * 26 24 22 28 28 H 1.48511 * 109.46939 * 210.00066 * 26 24 22 29 29 H 1.48499 * 109.47254 * 330.00061 * 26 24 22 30 30 C 1.38269 * 120.11081 * 0.27041 * 6 5 4 31 31 C 1.38142 * 120.05465 * 359.45056 * 30 6 5 32 32 H 1.09006 * 109.47266 * 59.99236 * 1 2 3 33 33 H 1.08995 * 109.47647 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46838 * 299.99826 * 1 2 3 35 35 H 1.07996 * 120.03532 * 359.96183 * 4 3 2 36 36 H 1.07999 * 119.97455 * 180.02562 * 5 4 3 37 37 H 0.96698 * 114.00033 * 299.99646 * 9 7 6 38 38 H 1.08999 * 109.47631 * 64.99712 * 10 7 6 39 39 H 1.09004 * 109.47046 * 304.99389 * 10 7 6 40 40 H 0.97007 * 119.99894 * 359.97438 * 11 10 7 41 41 H 1.08001 * 118.67951 * 180.02562 * 14 13 12 42 42 H 1.08002 * 125.76328 * 359.93061 * 18 17 12 43 43 H 1.08997 * 109.46820 * 210.00471 * 21 20 16 44 44 H 1.08996 * 109.46904 * 330.00105 * 21 20 16 45 45 H 0.97000 * 120.00352 * 179.97438 * 25 24 22 46 46 H 1.08001 * 119.97121 * 179.70719 * 30 6 5 47 47 H 1.08002 * 120.03101 * 180.27828 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0005 8 1 5.0115 4.9038 0.3515 9 8 3.2826 5.9116 0.8651 10 6 3.9952 5.5862 -1.4212 11 7 4.7635 6.8334 -1.4438 12 6 4.9117 7.5319 -2.6260 13 7 4.3649 7.0873 -3.7523 14 6 4.5024 7.7491 -4.8875 15 7 5.1791 8.8733 -4.9759 16 6 5.7654 9.3999 -3.9020 17 6 5.6461 8.7327 -2.6672 18 6 6.3512 9.4985 -1.7136 19 7 6.8495 10.5435 -2.3105 20 7 6.5143 10.5149 -3.6702 21 6 6.8942 11.5170 -4.6692 22 6 5.8425 12.5947 -4.7247 23 1 4.9777 12.5392 -4.0800 24 6 5.9841 13.6518 -5.5985 25 7 5.0660 14.5922 -5.6473 26 14 7.4801 13.7483 -6.7130 27 1 7.1898 13.0526 -7.9924 28 1 7.8030 15.1719 -6.9860 29 1 8.6366 13.0973 -6.0468 30 6 1.9212 3.6047 0.0051 31 6 1.2916 2.3752 -0.0002 32 1 -0.3634 0.5140 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 4.0209 0.3798 0.0016 36 1 5.1346 2.5749 0.0000 37 1 2.3614 6.0608 0.6116 38 1 2.9718 5.7841 -1.7399 39 1 4.4535 4.8650 -2.0979 40 1 5.1682 7.1687 -0.6284 41 1 4.0404 7.3509 -5.7788 42 1 6.4557 9.2607 -0.6653 43 1 7.8525 11.9581 -4.3951 44 1 6.9793 11.0417 -5.6464 45 1 5.1658 15.3361 -6.2618 46 1 1.3344 4.5114 0.0095 47 1 0.2130 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065540438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = 63.952703 kcal Electronic energy + Delta-G solvation = -31445.153072 eV Core-core repulsion = 27016.398343 eV Total energy + Delta-G solvation = -4428.754729 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44022 -40.73813 -39.15299 -38.40409 -37.04269 -35.74354 -33.72661 -32.43688 -31.58696 -31.57306 -31.37822 -29.91788 -28.27324 -27.80417 -27.04412 -24.15553 -23.94415 -23.12158 -22.75268 -22.10754 -21.49371 -20.06754 -18.78042 -18.04006 -17.78753 -17.10494 -17.02537 -16.92210 -16.51171 -16.22071 -15.68370 -15.50040 -15.18231 -15.06530 -14.55713 -14.32404 -14.18088 -14.05577 -13.91137 -13.76722 -13.63560 -13.34925 -13.27545 -12.94241 -12.63507 -12.44387 -12.42883 -12.04402 -11.89380 -11.37107 -11.32480 -11.25183 -11.03996 -10.99446 -10.69842 -10.59568 -10.26614 -10.13202 -9.68658 -9.48058 -9.30868 -8.74112 -8.72309 -8.60297 -8.25771 -7.66870 -6.21353 -4.23871 0.85845 0.88550 1.26486 1.89641 2.77367 2.82850 2.97168 3.03559 3.21946 3.26840 3.27671 3.29484 3.99746 4.19637 4.25226 4.27046 4.34796 4.37733 4.48630 4.57548 4.61238 4.64902 4.68372 4.74156 4.86504 4.95020 4.96029 5.03147 5.08889 5.12260 5.16616 5.41954 5.46010 5.54231 5.59661 5.68363 5.73794 5.85463 6.09194 6.24010 6.24974 6.50831 6.53461 6.86515 6.88588 6.89566 7.14147 7.18684 7.31859 7.43197 7.81885 8.13354 8.31944 8.75400 8.81208 9.33483 10.91405 Molecular weight = 369.16amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.001597 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.991033 B =17527.567493 C =17852.071898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.129 3.871 4 C -0.150 4.150 5 C -0.065 4.065 6 C -0.152 4.152 7 C 0.141 3.859 8 H 0.114 0.886 9 O -0.551 6.551 10 C 0.106 3.894 11 N -0.702 5.702 12 C 0.510 3.490 13 N -0.618 5.618 14 C 0.369 3.631 15 N -0.557 5.557 16 C 0.367 3.633 17 C -0.336 4.336 18 C 0.074 3.926 19 N -0.241 5.241 20 N -0.333 5.333 21 C 0.237 3.763 22 C -0.538 4.538 23 H 0.078 0.922 24 C 0.080 3.920 25 N -0.888 5.888 26 Si 0.875 3.125 27 H -0.270 1.270 28 H -0.280 1.280 29 H -0.264 1.264 30 C -0.066 4.066 31 C -0.204 4.204 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.377 0.623 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.196 0.804 42 H 0.185 0.815 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.268 0.732 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 -29.694 13.222 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.168 4.168 5 C -0.083 4.083 6 C -0.153 4.153 7 C 0.081 3.919 8 H 0.131 0.869 9 O -0.357 6.357 10 C -0.019 4.019 11 N -0.336 5.336 12 C 0.258 3.742 13 N -0.349 5.349 14 C 0.075 3.925 15 N -0.282 5.282 16 C 0.119 3.881 17 C -0.354 4.354 18 C -0.122 4.122 19 N -0.056 5.056 20 N -0.119 5.119 21 C 0.119 3.881 22 C -0.577 4.577 23 H 0.096 0.904 24 C -0.124 4.124 25 N -0.525 5.525 26 Si 0.701 3.299 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.189 1.189 30 C -0.084 4.084 31 C -0.223 4.223 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.225 0.775 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.250 0.750 41 H 0.212 0.788 42 H 0.202 0.798 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.885 -28.841 12.606 32.021 hybrid contribution -0.252 0.078 -0.105 0.284 sum -6.137 -28.763 12.501 31.957 Atomic orbital electron populations 1.23088 0.78136 1.04128 1.01524 1.86078 1.21608 1.26926 1.88543 1.19097 0.92442 0.84220 0.95842 1.20435 0.91405 0.98732 1.06251 1.20824 0.99994 0.90788 0.96690 1.20218 0.94121 0.95476 1.05451 1.20997 0.96421 0.85142 0.89312 0.86863 1.86642 1.28700 1.66173 1.54203 1.22001 0.97357 0.86120 0.96380 1.44186 1.57053 1.24623 1.07695 1.17886 0.84983 0.84703 0.86656 1.67952 1.30853 1.37382 0.98731 1.24412 0.89011 0.84981 0.94061 1.67508 1.15778 1.14384 1.30499 1.18895 0.91215 0.88487 0.89508 1.19584 1.15853 1.02464 0.97457 1.23418 0.97330 0.91985 0.99420 1.76952 1.20387 1.19539 0.88734 1.48959 1.39626 1.17316 1.05956 1.20080 0.97866 0.85896 0.84305 1.21115 1.07294 1.05432 1.23823 0.90408 1.24769 0.96386 0.94892 0.96360 1.69870 1.33978 1.11433 1.37203 0.86873 0.83261 0.78114 0.81694 1.19507 1.20522 1.18866 1.20667 0.93746 0.97281 0.96727 1.21205 1.00195 0.92181 1.08733 0.92440 0.88121 0.92536 0.84949 0.84939 0.77483 0.90983 0.90296 0.74956 0.78808 0.79809 0.93057 0.93084 0.92156 0.85715 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.42 10.50 -19.44 -0.20 -2.62 16 3 C 0.13 1.01 6.69 -39.22 -0.26 0.75 16 4 C -0.15 -1.10 9.99 -39.43 -0.39 -1.49 16 5 C -0.06 -0.43 9.66 -39.60 -0.38 -0.81 16 6 C -0.15 -1.03 4.98 -104.60 -0.52 -1.55 16 7 C 0.14 0.93 3.24 -27.88 -0.09 0.84 16 8 H 0.11 0.68 8.00 -51.93 -0.42 0.26 16 9 O -0.55 -4.07 13.13 -35.23 -0.46 -4.53 16 10 C 0.11 0.89 5.35 -4.04 -0.02 0.87 16 11 N -0.70 -7.41 5.63 -60.08 -0.34 -7.75 16 12 C 0.51 7.68 7.55 -154.85 -1.17 6.51 16 13 N -0.62 -9.59 9.69 -13.62 -0.13 -9.72 16 14 C 0.37 6.09 12.24 -92.11 -1.13 4.96 16 15 N -0.56 -11.55 10.47 -13.97 -0.15 -11.70 16 16 C 0.37 7.99 8.04 -156.24 -1.26 6.73 16 17 C -0.34 -6.02 6.14 -106.82 -0.66 -6.68 16 18 C 0.07 1.24 11.87 -17.11 -0.20 1.04 16 19 N -0.24 -5.09 12.45 30.80 0.38 -4.71 16 20 N -0.33 -7.84 3.63 -61.64 -0.22 -8.06 16 21 C 0.24 5.99 5.26 -5.19 -0.03 5.96 16 22 C -0.54 -15.74 9.94 -34.44 -0.34 -16.08 16 23 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 24 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 25 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 26 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 30 C -0.07 -0.43 9.32 -39.61 -0.37 -0.80 16 31 C -0.20 -1.38 9.04 -39.43 -0.36 -1.73 16 32 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.63 8.03 -52.49 -0.42 0.21 16 37 H 0.38 1.85 7.49 45.56 0.34 2.19 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.41 3.71 8.34 -40.82 -0.34 3.37 16 41 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.19 2.11 8.06 -52.49 -0.42 1.68 16 43 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 44 H 0.05 1.26 7.57 -51.93 -0.39 0.87 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.12 0.56 6.77 -52.49 -0.36 0.21 16 47 H 0.13 0.63 6.30 -52.49 -0.33 0.30 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -36.97 402.25 -10.45 -47.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.21 Total: 3.85 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -6.28 Total: 1.82 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: 0.32 Total: -68.28 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.67 Total: -7.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.97 -10.45 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065540438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.378 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds