Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47303 * 2 1 4 4 H 1.09001 * 109.74967 * 182.58320 * 3 2 1 5 5 C 1.52252 * 109.61311 * 303.01663 * 3 2 1 6 6 C 1.39004 * 124.27811 * 317.09751 * 5 3 2 7 7 C 1.33022 * 115.66091 * 179.97438 * 6 5 3 8 8 S 1.75781 * 109.60518 * 0.02562 * 7 6 5 9 9 C 1.34802 * 122.07450 * 137.08756 * 5 3 2 10 10 C 1.51410 * 123.95769 * 0.11224 * 9 5 3 11 11 C 1.53354 * 108.07796 * 15.50710 * 10 9 5 12 12 N 1.46913 * 109.60895 * 62.16265 * 3 2 1 13 13 C 1.38110 * 110.99782 * 63.41419 * 12 3 2 14 14 N 1.32857 * 120.81575 * 36.55460 * 13 12 3 15 15 C 1.32129 * 121.19540 * 179.97438 * 14 13 12 16 16 N 1.31506 * 122.64260 * 359.97438 * 15 14 13 17 17 C 1.33198 * 120.68449 * 0.02562 * 16 15 14 18 18 C 1.40815 * 120.80708 * 216.79858 * 13 12 3 19 19 C 1.41168 * 134.70156 * 359.35766 * 18 13 12 20 20 N 1.30259 * 108.46801 * 180.44417 * 19 18 13 21 21 N 1.36313 * 134.61260 * 179.97438 * 17 16 15 22 22 C 1.46493 * 125.87362 * 359.97438 * 21 17 16 23 23 C 1.50703 * 109.47102 * 269.99575 * 22 21 17 24 24 H 1.08003 * 119.99382 * 359.97438 * 23 22 21 25 25 C 1.37872 * 120.00295 * 180.02562 * 23 22 21 26 26 N 1.31509 * 119.99959 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00117 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47142 * 89.99667 * 27 25 23 29 29 H 1.48496 * 109.47241 * 210.00101 * 27 25 23 30 30 H 1.48503 * 109.47113 * 330.00030 * 27 25 23 31 31 H 1.08997 * 109.47514 * 185.62311 * 1 2 3 32 32 H 1.09001 * 109.47364 * 305.62428 * 1 2 3 33 33 H 1.09000 * 109.47320 * 65.62288 * 1 2 3 34 34 H 1.08996 * 109.47001 * 240.00023 * 2 1 3 35 35 H 1.09003 * 109.47067 * 120.00599 * 2 1 3 36 36 H 1.08004 * 122.17113 * 359.96329 * 6 5 3 37 37 H 1.08001 * 125.19284 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.74311 * 135.15054 * 10 9 5 39 39 H 1.09001 * 109.74065 * 255.80840 * 10 9 5 40 40 H 1.09007 * 109.53366 * 191.30107 * 11 10 9 41 41 H 1.08997 * 109.53902 * 71.06340 * 11 10 9 42 42 H 1.07998 * 118.67756 * 179.97438 * 15 14 13 43 43 H 1.07996 * 125.76694 * 0.70961 * 19 18 13 44 44 H 1.08998 * 109.47676 * 29.99220 * 22 21 17 45 45 H 1.09003 * 109.47450 * 150.00074 * 22 21 17 46 46 H 0.97009 * 119.99845 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4481 -0.0462 5 6 1.4736 2.1848 -1.2026 6 6 1.3912 1.6520 -2.4838 7 6 0.8652 2.4518 -3.4075 8 16 0.4270 3.9891 -2.6764 9 6 0.9994 3.4432 -1.1087 10 6 0.9787 4.2456 0.1751 11 6 1.9095 3.5579 1.1812 12 7 1.5951 2.1227 1.2238 13 6 2.1400 1.5296 2.3457 14 7 3.3789 1.0500 2.3282 15 6 3.9078 0.4816 3.3973 16 7 3.2533 0.3558 4.5309 17 6 2.0050 0.8053 4.6486 18 6 1.3943 1.4139 3.5345 19 6 0.0945 1.7949 3.9325 20 7 -0.0768 1.4419 5.1746 21 7 1.0857 0.8258 5.6548 22 6 1.2795 0.2930 7.0056 23 6 0.8508 -1.1514 7.0422 24 1 0.4716 -1.6248 6.1486 25 6 0.9419 -1.8680 8.2165 26 7 1.4032 -1.2913 9.3047 27 14 0.4099 -3.6581 8.2620 28 1 1.5680 -4.5272 7.9324 29 1 -0.0889 -3.9919 9.6203 30 1 -0.6725 -3.8782 7.2693 31 1 -0.3634 -1.0227 0.1007 32 1 -0.3634 0.5986 0.8353 33 1 -0.3634 0.4242 -0.9360 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.7323 0.6536 -2.7145 37 1 0.7284 2.1956 -4.4478 38 1 1.3302 5.2591 -0.0185 39 1 -0.0356 4.2775 0.5729 40 1 1.7625 3.9927 2.1699 41 1 2.9457 3.6950 0.8719 42 1 4.9184 0.1053 3.3377 43 1 -0.6361 2.2908 3.3107 44 1 2.3324 0.3664 7.2776 45 1 0.6807 0.8676 7.7123 46 1 1.4676 -1.7956 10.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065542865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = 163.140448 kcal Electronic energy + Delta-G solvation = -31201.709909 eV Core-core repulsion = 27220.009155 eV Total energy + Delta-G solvation = -3981.700754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 369.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74048 -40.21920 -38.40875 -36.63346 -34.15512 -33.90648 -33.02064 -31.54318 -31.25446 -29.51086 -28.73143 -27.30958 -25.66707 -24.54388 -23.76510 -23.52171 -22.60427 -21.78895 -21.33180 -19.77227 -18.21757 -17.72785 -17.43730 -16.96699 -16.71213 -16.41925 -16.13600 -15.21314 -15.03776 -14.77097 -14.68067 -14.38529 -14.00939 -13.97326 -13.46244 -13.44637 -13.24973 -13.12671 -12.97891 -12.66322 -12.21714 -12.07164 -12.01201 -11.73644 -11.62486 -11.38328 -11.20785 -11.16544 -11.14282 -10.92217 -10.85342 -10.67759 -10.49419 -10.31777 -10.28349 -9.78791 -9.12706 -8.90993 -8.74321 -8.63855 -8.57675 -8.38744 -7.98320 -6.25994 -4.32825 0.80668 0.90366 1.41632 1.66606 1.79263 2.48777 2.86240 2.96586 3.22315 3.27986 3.30340 3.33650 4.10283 4.29211 4.33119 4.45469 4.55099 4.61060 4.69722 4.85062 4.94840 4.97759 5.09642 5.10920 5.12405 5.17594 5.23589 5.37357 5.41268 5.44459 5.51636 5.61586 5.68988 5.72842 5.84839 5.88596 6.03587 6.08336 6.18792 6.24763 6.32305 6.43803 6.55002 6.64792 6.96414 7.02986 7.08948 7.22968 7.57769 7.74668 7.85729 8.09499 8.53961 8.70579 9.32646 10.82228 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.002426 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.766782 B =11540.264181 C =11808.242625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.155 3.845 4 H 0.081 0.919 5 C -0.093 4.093 6 C -0.116 4.116 7 C -0.218 4.218 8 S 0.091 5.909 9 C -0.172 4.172 10 C -0.041 4.041 11 C 0.069 3.931 12 N -0.476 5.476 13 C 0.428 3.572 14 N -0.592 5.592 15 C 0.339 3.661 16 N -0.521 5.521 17 C 0.343 3.657 18 C -0.266 4.266 19 C 0.077 3.923 20 N -0.233 5.233 21 N -0.332 5.332 22 C 0.263 3.737 23 C -0.535 4.535 24 H 0.062 0.938 25 C 0.067 3.933 26 N -0.890 5.890 27 Si 0.907 3.093 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.272 1.272 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 10.757 -24.168 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.046 3.954 4 H 0.099 0.901 5 C -0.106 4.106 6 C -0.147 4.147 7 C -0.353 4.353 8 S 0.357 5.643 9 C -0.289 4.289 10 C -0.080 4.080 11 C -0.059 4.059 12 N -0.198 5.198 13 C 0.181 3.819 14 N -0.314 5.314 15 C 0.045 3.955 16 N -0.242 5.242 17 C 0.094 3.906 18 C -0.282 4.282 19 C -0.118 4.118 20 N -0.048 5.048 21 N -0.119 5.119 22 C 0.146 3.854 23 C -0.574 4.574 24 H 0.080 0.920 25 C -0.136 4.136 26 N -0.528 5.528 27 Si 0.734 3.266 28 H -0.203 1.203 29 H -0.208 1.208 30 H -0.197 1.197 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.212 0.788 43 H 0.207 0.793 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.047 11.587 -23.236 25.965 hybrid contribution 0.895 -2.134 -0.116 2.317 sum 0.848 9.453 -23.353 25.208 Atomic orbital electron populations 1.21677 0.94863 1.01117 1.02437 1.21478 0.97256 0.93755 1.02126 1.20525 0.98144 0.92659 0.84091 0.90137 1.19451 1.02773 0.93541 0.94805 1.19872 1.01965 1.01207 0.91630 1.25328 1.09006 0.97513 1.03493 1.84089 1.62944 1.16541 1.00758 1.24744 1.07222 0.98675 0.98298 1.20385 1.01429 0.96927 0.89295 1.22165 0.98205 0.85158 1.00354 1.59488 1.56438 1.03349 1.00489 1.19279 0.86187 0.88340 0.88136 1.68418 1.11854 1.18734 1.32444 1.24501 0.98855 0.90291 0.81825 1.67533 1.06634 1.22227 1.27789 1.19119 0.89591 0.93410 0.88488 1.19789 0.98401 1.13753 0.96267 1.23581 0.95075 1.00387 0.92789 1.77014 1.05398 1.10739 1.11694 1.49550 1.05721 1.44643 1.11974 1.19825 0.99195 0.94585 0.71746 1.21235 1.44582 0.94753 0.96804 0.92017 1.24891 0.94649 0.99140 0.94931 1.69915 1.44980 1.37208 1.00724 0.86345 0.79036 0.83709 0.77536 1.20268 1.20783 1.19710 0.93534 0.91392 0.92946 0.91401 0.91643 0.84441 0.81975 0.89684 0.88991 0.89287 0.92713 0.78774 0.79283 0.92275 0.92649 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.43 37.16 0.35 -1.32 16 2 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 3 C 0.16 1.74 2.02 -68.09 -0.14 1.60 16 4 H 0.08 0.98 7.50 -51.93 -0.39 0.59 16 5 C -0.09 -0.94 4.42 -104.79 -0.46 -1.40 16 6 C -0.12 -1.03 8.70 -41.11 -0.36 -1.39 16 7 C -0.22 -1.74 11.21 28.92 0.32 -1.42 16 8 S 0.09 0.75 23.32 -107.50 -2.51 -1.76 16 9 C -0.17 -1.61 6.42 -35.18 -0.23 -1.84 16 10 C -0.04 -0.33 6.50 -27.35 -0.18 -0.51 16 11 C 0.07 0.68 5.50 -3.59 -0.02 0.66 16 12 N -0.48 -5.67 3.61 -165.39 -0.60 -6.27 16 13 C 0.43 6.36 4.41 -154.85 -0.68 5.68 16 14 N -0.59 -8.86 8.87 -13.62 -0.12 -8.98 16 15 C 0.34 5.39 12.24 -92.11 -1.13 4.27 16 16 N -0.52 -10.50 10.47 -13.97 -0.15 -10.64 16 17 C 0.34 7.26 8.04 -156.23 -1.26 6.01 16 18 C -0.27 -4.67 6.17 -106.81 -0.66 -5.33 16 19 C 0.08 1.30 12.05 -17.11 -0.21 1.09 16 20 N -0.23 -4.86 12.45 30.80 0.38 -4.47 16 21 N -0.33 -7.71 3.63 -61.65 -0.22 -7.93 16 22 C 0.26 6.87 6.19 -5.20 -0.03 6.83 16 23 C -0.54 -15.05 9.39 -34.44 -0.32 -15.37 16 24 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 25 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 26 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 27 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 33 H 0.05 0.57 6.77 -51.93 -0.35 0.22 16 34 H 0.07 0.67 7.34 -51.93 -0.38 0.29 16 35 H 0.06 0.92 7.00 -51.93 -0.36 0.55 16 36 H 0.14 1.06 7.35 -52.48 -0.39 0.67 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.88 7.97 -51.93 -0.41 0.46 16 41 H 0.05 0.55 8.06 -51.93 -0.42 0.14 16 42 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -31.02 390.36 -12.86 -43.89 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.02 Total: 0.58 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -5.23 Total: -2.05 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.03 Total: -63.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.02 -12.86 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065542865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.029 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds