Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36073 * 117.00198 * 2 1 4 4 C 1.35761 * 127.26053 * 359.97032 * 3 2 1 5 5 N 1.36116 * 107.06417 * 180.02562 * 4 3 2 6 6 C 1.40094 * 124.93831 * 179.97438 * 5 4 3 7 7 C 1.38853 * 120.06868 * 187.76350 * 6 5 4 8 8 C 1.38115 * 119.92883 * 179.97438 * 7 6 5 9 9 C 1.38278 * 120.06966 * 0.02562 * 8 7 6 10 10 C 1.38288 * 120.14252 * 0.02562 * 9 8 7 11 11 C 1.38114 * 120.06492 * 359.97438 * 10 9 8 12 12 N 1.28466 * 110.12557 * 0.22601 * 5 4 3 13 13 C 1.31991 * 110.21745 * 359.62362 * 12 5 4 14 14 C 1.47478 * 126.44026 * 180.15411 * 13 12 5 15 15 O 1.21598 * 119.99945 * 186.89217 * 14 13 12 16 16 N 1.34781 * 120.00305 * 6.89064 * 14 13 12 17 17 C 1.46502 * 119.99818 * 2.61338 * 16 14 13 18 18 C 1.50696 * 109.46800 * 82.36752 * 17 16 14 19 19 H 1.08007 * 120.00372 * 354.59655 * 18 17 16 20 20 C 1.37880 * 120.00203 * 174.59122 * 18 17 16 21 21 N 1.31508 * 120.00578 * 183.65537 * 20 18 17 22 22 Si 1.86806 * 119.99582 * 3.65965 * 20 18 17 23 23 H 1.48500 * 109.47231 * 93.88370 * 22 20 18 24 24 H 1.48504 * 109.46744 * 213.88267 * 22 20 18 25 25 H 1.48497 * 109.47075 * 333.87926 * 22 20 18 26 26 C 1.46496 * 120.00037 * 182.61714 * 16 14 13 27 27 H 1.09000 * 109.47419 * 356.06695 * 26 16 14 28 28 C 1.53000 * 109.47027 * 116.06631 * 26 16 14 29 29 C 1.53000 * 109.47136 * 236.06299 * 26 16 14 30 30 C 1.53000 * 117.50034 * 248.62573 * 29 26 16 31 31 C 1.52996 * 59.99946 * 252.50991 * 30 29 26 32 32 H 1.08998 * 109.47323 * 300.00406 * 1 2 3 33 33 H 1.09004 * 109.47020 * 60.00467 * 1 2 3 34 34 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 35 35 H 1.08004 * 126.46909 * 0.03349 * 4 3 2 36 36 H 1.08007 * 120.03818 * 0.02562 * 7 6 5 37 37 H 1.08000 * 119.96230 * 179.71966 * 8 7 6 38 38 H 1.08003 * 119.93121 * 179.97438 * 9 8 7 39 39 H 1.07995 * 119.97238 * 180.02562 * 10 9 8 40 40 H 1.07999 * 120.03375 * 180.02562 * 11 10 9 41 41 H 1.08995 * 109.47018 * 202.37197 * 17 16 14 42 42 H 1.09002 * 109.47170 * 322.37582 * 17 16 14 43 43 H 0.97000 * 120.00461 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47492 * 59.99737 * 28 26 16 45 45 H 1.09004 * 109.47521 * 179.97438 * 28 26 16 46 46 H 1.09000 * 109.47222 * 300.00041 * 28 26 16 47 47 H 1.08997 * 115.54525 * 34.33118 * 29 26 16 48 48 H 1.09000 * 117.49949 * 359.97438 * 30 29 26 49 49 H 1.09000 * 117.50070 * 145.02144 * 30 29 26 50 50 H 1.08998 * 117.49829 * 252.50924 * 31 30 29 51 51 H 1.09006 * 117.51951 * 107.47705 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.4572 2.4353 -0.0006 5 7 2.4559 3.3602 -0.0009 6 6 2.2642 4.7479 -0.0020 7 6 3.3486 5.5999 -0.1646 8 6 3.1562 6.9676 -0.1658 9 6 1.8856 7.4887 -0.0048 10 6 0.8037 6.6429 0.1585 11 6 0.9895 5.2743 0.1605 12 7 3.5998 2.7755 -0.0053 13 6 3.4423 1.4650 0.0000 14 6 4.5157 0.4537 0.0006 15 8 4.2409 -0.7246 -0.1206 16 7 5.8013 0.8354 0.1354 17 6 6.1281 2.2490 0.3388 18 6 5.9636 2.5980 1.7955 19 1 5.5643 1.8679 2.4840 20 6 6.3231 3.8493 2.2496 21 7 6.2473 4.1303 3.5320 22 14 6.9175 5.1454 1.0428 23 1 5.7721 5.9909 0.6204 24 1 7.9457 5.9951 1.6958 25 1 7.5074 4.4807 -0.1468 26 6 6.8717 -0.1631 0.0785 27 1 6.4359 -1.1585 -0.0073 28 6 7.7606 0.1108 -1.1363 29 6 7.7125 -0.0826 1.3542 30 6 9.1471 0.4330 1.2235 31 6 8.8889 -1.0518 1.4873 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 0.0005 35 1 0.3961 2.6364 -0.0006 36 1 4.3413 5.1935 -0.2908 37 1 3.9999 7.6308 -0.2877 38 1 1.7378 8.5585 -0.0056 39 1 -0.1875 7.0529 0.2836 40 1 0.1442 4.6143 0.2876 41 1 7.1592 2.4307 0.0357 42 1 5.4590 2.8665 -0.2605 43 1 6.4998 5.0108 3.8514 44 1 8.1964 1.1062 -1.0506 45 1 8.5574 -0.6318 -1.1784 46 1 7.1616 0.0536 -2.0451 47 1 7.1661 0.1733 2.2619 48 1 9.4920 0.7145 0.2285 49 1 9.5448 1.0284 2.0453 50 1 9.1167 -1.4331 2.4826 51 1 9.0635 -1.7470 0.6661 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065550352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = 97.803703 kcal Electronic energy + Delta-G solvation = -35181.077004 eV Core-core repulsion = 30857.330508 eV Total energy + Delta-G solvation = -4323.746496 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57196 -39.37815 -38.93548 -38.01714 -37.16163 -34.57515 -33.21789 -32.37360 -31.28927 -30.32717 -29.58720 -28.94672 -27.58993 -27.09181 -24.91399 -23.63705 -22.94985 -22.40691 -21.80500 -21.31461 -20.58232 -19.59169 -18.61211 -17.79771 -16.88999 -16.72136 -16.38313 -16.14788 -16.10619 -15.85423 -15.03594 -14.88660 -14.82212 -14.50577 -14.40433 -14.19661 -13.95965 -13.68169 -13.45980 -13.07866 -12.92824 -12.64606 -12.50898 -12.35882 -11.92868 -11.71562 -11.67514 -11.43047 -11.39196 -11.31803 -11.16040 -10.92201 -10.81264 -10.66464 -10.60554 -10.08443 -9.89061 -9.87049 -9.66576 -9.43467 -9.33734 -9.13208 -9.02595 -8.59719 -8.48366 -7.78746 -7.52859 -6.03343 -3.97657 0.87838 1.31078 2.29829 2.48945 2.57920 3.19194 3.30790 3.32601 3.46100 3.76728 3.84484 4.13040 4.40638 4.46035 4.56885 4.76088 4.89904 4.92985 5.09339 5.16072 5.23386 5.24969 5.29037 5.29668 5.35935 5.44961 5.53509 5.55037 5.57657 5.61357 5.71257 5.75102 5.83135 5.88172 5.95087 6.08403 6.18991 6.24140 6.28443 6.30414 6.37103 6.47002 6.51342 6.60898 6.65430 6.69607 6.72669 6.98181 7.01839 7.25813 7.56124 7.59972 7.67148 8.20362 8.31257 8.57802 8.98311 9.04922 9.58315 11.10291 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.004738 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.375731 B = 5907.714528 C = 8489.821263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.274 6.274 3 C 0.069 3.931 4 C -0.116 4.116 5 N -0.230 5.230 6 C 0.153 3.847 7 C -0.105 4.105 8 C -0.097 4.097 9 C -0.127 4.127 10 C -0.101 4.101 11 C -0.132 4.132 12 N -0.182 5.182 13 C 0.003 3.997 14 C 0.604 3.396 15 O -0.551 6.551 16 N -0.573 5.573 17 C 0.198 3.802 18 C -0.504 4.504 19 H 0.071 0.929 20 C 0.077 3.923 21 N -0.899 5.899 22 Si 0.856 3.144 23 H -0.263 1.263 24 H -0.290 1.290 25 H -0.265 1.265 26 C 0.172 3.828 27 H 0.096 0.904 28 C -0.162 4.162 29 C -0.138 4.138 30 C -0.176 4.176 31 C -0.188 4.188 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.178 0.822 36 H 0.146 0.854 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 2.091 -9.205 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.184 6.184 3 C 0.015 3.985 4 C -0.254 4.254 5 N -0.016 5.016 6 C 0.062 3.938 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.145 4.145 10 C -0.120 4.120 11 C -0.152 4.152 12 N -0.015 5.015 13 C -0.159 4.159 14 C 0.391 3.609 15 O -0.429 6.429 16 N -0.302 5.302 17 C 0.077 3.923 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.124 4.124 21 N -0.539 5.539 22 Si 0.683 3.317 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.189 1.189 26 C 0.068 3.932 27 H 0.114 0.886 28 C -0.220 4.220 29 C -0.157 4.157 30 C -0.213 4.213 31 C -0.225 4.225 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.195 0.805 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.136 0.864 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.106 0.894 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.881 2.236 -9.152 12.283 hybrid contribution -0.519 0.580 -0.069 0.781 sum -8.400 2.816 -9.221 12.788 Atomic orbital electron populations 1.23033 0.79311 1.03757 1.00746 1.86271 1.19913 1.22773 1.89447 1.18700 0.91297 0.84747 1.03780 1.22331 0.95858 0.87853 1.19375 1.42363 1.03698 1.04463 1.51080 1.17590 0.95089 0.78433 1.02733 1.21297 0.99076 0.93135 0.98960 1.21084 0.97534 0.94334 0.98626 1.21217 0.92630 1.00041 1.00636 1.20901 0.99290 0.92068 0.99742 1.20791 0.94726 0.96195 1.03534 1.74289 1.05912 1.06387 1.14928 1.21540 0.91582 0.90235 1.12498 1.16681 0.81523 0.85989 0.76740 1.90728 1.82747 1.16810 1.52596 1.47812 1.03963 1.09996 1.68459 1.20225 0.96737 0.76706 0.98668 1.21205 1.41906 0.99323 0.91801 0.91072 1.24725 0.95294 0.97820 0.94578 1.69898 1.49237 1.21631 1.13114 0.87263 0.79168 0.82957 0.82269 1.18895 1.21658 1.18947 1.20383 0.86976 0.93142 0.92658 0.88610 1.22263 0.99655 1.02298 0.97805 1.22588 0.90018 1.02761 1.00362 1.22998 0.99894 0.95670 1.02704 1.22936 1.04482 0.93011 1.02081 0.93132 0.93240 0.88347 0.80497 0.83661 0.85192 0.85545 0.85149 0.85244 0.94987 0.92432 0.92939 0.91668 0.91902 0.92711 0.86351 0.88837 0.89102 0.89369 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.22 101.05 1.03 1.34 16 2 O -0.27 -4.91 10.13 -21.71 -0.22 -5.13 16 3 C 0.07 1.33 7.05 -39.10 -0.28 1.05 16 4 C -0.12 -1.89 9.89 -16.54 -0.16 -2.06 16 5 N -0.23 -4.29 3.52 -10.40 -0.04 -4.33 16 6 C 0.15 2.53 6.64 -83.62 -0.56 1.98 16 7 C -0.11 -1.81 9.04 -39.40 -0.36 -2.16 16 8 C -0.10 -1.36 10.04 -39.61 -0.40 -1.75 16 9 C -0.13 -1.43 10.04 -39.55 -0.40 -1.83 16 10 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 11 C -0.13 -1.68 9.43 -39.39 -0.37 -2.05 16 12 N -0.18 -3.92 7.16 33.46 0.24 -3.68 16 13 C 0.00 0.06 6.76 -82.67 -0.56 -0.50 16 14 C 0.60 14.05 7.60 -12.49 -0.09 13.96 16 15 O -0.55 -13.47 15.88 3.54 0.06 -13.42 16 16 N -0.57 -12.62 2.38 -168.71 -0.40 -13.02 16 17 C 0.20 4.62 3.20 -5.19 -0.02 4.60 16 18 C -0.50 -13.52 8.19 -34.44 -0.28 -13.80 16 19 H 0.07 2.19 7.91 -52.48 -0.42 1.78 16 20 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 22 Si 0.86 19.86 26.56 -169.99 -4.51 15.35 16 23 H -0.26 -5.57 5.25 56.52 0.30 -5.28 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.26 -5.91 6.37 56.52 0.36 -5.56 16 26 C 0.17 3.29 3.01 -67.93 -0.20 3.08 16 27 H 0.10 1.88 6.90 -51.93 -0.36 1.52 16 28 C -0.16 -2.60 7.84 37.16 0.29 -2.30 16 29 C -0.14 -2.61 5.02 -90.62 -0.46 -3.07 16 30 C -0.18 -2.95 9.57 -26.73 -0.26 -3.21 16 31 C -0.19 -2.86 9.90 -26.73 -0.26 -3.12 16 32 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.18 2.05 6.71 -52.48 -0.35 1.70 16 36 H 0.15 2.83 5.19 -52.48 -0.27 2.56 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.32 6.70 -52.49 -0.35 0.96 16 41 H 0.03 0.74 5.50 -51.93 -0.29 0.46 16 42 H 0.06 1.36 4.80 -51.93 -0.25 1.11 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.06 1.07 5.70 -51.93 -0.30 0.78 16 45 H 0.06 0.85 7.07 -51.93 -0.37 0.48 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.12 2.65 7.48 -51.93 -0.39 2.26 16 48 H 0.09 1.45 5.85 -51.93 -0.30 1.14 16 49 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 50 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.09 1.18 7.61 -51.93 -0.40 0.78 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -33.73 405.93 -8.92 -42.66 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.12 Total: 10.65 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.82 Total: -9.31 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.58 Total: -46.90 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.16 Total: -18.55 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.51 Total: 15.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.73 -8.92 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065550352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.460 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds