Wall clock time and date at job start Tue Mar 31 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99488 * 2 1 4 4 C 1.38220 * 119.99907 * 179.76934 * 3 2 1 5 5 N 1.48016 * 120.00333 * 180.23520 * 4 3 2 6 6 O 1.21796 * 119.99830 * 7.93135 * 5 4 3 7 7 O 1.21800 * 120.00102 * 187.92897 * 5 4 3 8 8 C 1.38262 * 119.99497 * 0.51041 * 4 3 2 9 9 S 1.76202 * 119.99785 * 179.72576 * 8 4 3 10 10 O 1.42097 * 106.40022 * 280.75710 * 9 8 4 11 11 O 1.42099 * 106.40048 * 53.67559 * 9 8 4 12 12 N 1.65598 * 107.21636 * 167.21670 * 9 8 4 13 13 C 1.46964 * 120.59386 * 275.90198 * 12 9 8 14 14 C 1.53810 * 108.40140 * 124.76154 * 13 12 9 15 15 N 1.46968 * 108.58114 * 49.63375 * 14 13 12 16 16 C 1.36932 * 120.59107 * 124.62484 * 15 14 13 17 17 H 1.07999 * 120.00192 * 218.28443 * 16 15 14 18 18 C 1.38815 * 119.99979 * 38.29396 * 16 15 14 19 19 N 1.31612 * 119.99927 * 4.45946 * 18 16 15 20 20 Si 1.86806 * 119.99752 * 184.46827 * 18 16 15 21 21 H 1.48491 * 109.47162 * 89.99618 * 20 18 16 22 22 H 1.48504 * 109.46429 * 209.99594 * 20 18 16 23 23 H 1.48497 * 109.47096 * 329.99406 * 20 18 16 24 24 C 1.46968 * 118.81052 * 304.65381 * 15 14 13 25 25 C 1.46964 * 120.59751 * 96.18420 * 12 9 8 26 26 C 1.38217 * 120.00167 * 359.74375 * 8 4 3 27 27 C 1.38211 * 120.00058 * 180.27870 * 2 1 3 28 28 C 1.50699 * 120.00121 * 0.02562 * 27 2 1 29 29 H 1.09007 * 109.46853 * 269.72112 * 1 2 3 30 30 H 1.09005 * 109.47441 * 149.72456 * 1 2 3 31 31 H 1.08999 * 109.47792 * 29.72374 * 1 2 3 32 32 H 1.07996 * 120.00478 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.60795 * 244.54093 * 13 12 9 34 34 H 1.08996 * 109.61271 * 5.05282 * 13 12 9 35 35 H 1.09003 * 109.73617 * 289.84966 * 14 13 12 36 36 H 1.09001 * 109.67640 * 169.38759 * 14 13 12 37 37 H 0.97003 * 119.99935 * 180.02562 * 19 18 16 38 38 H 1.08992 * 109.60700 * 295.47646 * 24 15 14 39 39 H 1.09003 * 109.74621 * 175.05332 * 24 15 14 40 40 H 1.09004 * 109.60434 * 354.94389 * 25 12 9 41 41 H 1.08994 * 109.61500 * 115.28092 * 25 12 9 42 42 H 1.07997 * 119.99902 * 179.97438 * 26 8 4 43 43 H 1.08993 * 109.47514 * 90.00023 * 28 27 2 44 44 H 1.09004 * 109.46970 * 209.99829 * 28 27 2 45 45 H 1.09001 * 109.46914 * 329.99820 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0048 5 7 4.3204 2.4794 0.0101 6 8 3.7196 3.5288 0.1557 7 8 5.5302 2.4847 -0.1312 8 6 4.2717 0.0001 -0.0010 9 16 6.0337 0.0002 -0.0022 10 8 6.4340 0.2607 -1.3405 11 8 6.4356 0.8028 1.0994 12 7 6.5241 -1.5439 0.3405 13 6 6.6222 -2.0060 1.7322 14 6 5.7689 -3.2768 1.8831 15 7 6.1197 -4.2077 0.8012 16 6 6.5262 -5.4842 1.0847 17 1 7.3114 -5.9428 0.5021 18 6 5.9288 -6.1888 2.1209 19 7 4.9134 -5.6645 2.7736 20 14 6.5665 -7.8811 2.5889 21 1 7.6231 -7.7434 3.6231 22 1 5.4501 -8.6991 3.1274 23 1 7.1329 -8.5462 1.3880 24 6 6.0270 -3.7437 -0.5902 25 6 6.8751 -2.4748 -0.7412 26 6 3.5806 -1.1969 -0.0063 27 6 2.1981 -1.1969 -0.0058 28 6 1.4446 -2.5020 -0.0128 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3635 0.8924 -0.5095 32 1 1.6582 2.1326 0.0004 33 1 7.6619 -2.2300 1.9708 34 1 6.2492 -1.2314 2.4021 35 1 4.7116 -3.0202 1.8164 36 1 5.9721 -3.7430 2.8472 37 1 4.4962 -6.1567 3.4979 38 1 4.9881 -3.5205 -0.8329 39 1 6.4017 -4.5163 -1.2617 40 1 6.6689 -2.0097 -1.7052 41 1 7.9330 -2.7289 -0.6765 42 1 4.1207 -2.1321 -0.0113 43 1 1.2633 -2.8115 -1.0420 44 1 2.0336 -3.2643 0.4974 45 1 0.4920 -2.3743 0.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065626213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:21 Heat of formation + Delta-G solvation = -13.978761 kcal Electronic energy + Delta-G solvation = -33667.236451 eV Core-core repulsion = 29202.420467 eV Total energy + Delta-G solvation = -4464.815985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.124 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43156 -40.11676 -37.83130 -37.01956 -36.82234 -35.56493 -34.30808 -33.96688 -32.91754 -31.23961 -30.35009 -29.02728 -27.92651 -26.54551 -25.33397 -23.47039 -23.05697 -23.01180 -21.93870 -20.31108 -19.44117 -18.93008 -18.48976 -17.76892 -17.63751 -16.94661 -16.45383 -16.06582 -15.69623 -14.98228 -14.93414 -14.80452 -14.74302 -14.16573 -13.78585 -13.77518 -13.59582 -13.23805 -13.17174 -13.05333 -12.82717 -12.66601 -12.31100 -12.17958 -12.12900 -11.97766 -11.86117 -11.70866 -11.52938 -11.37148 -11.14233 -11.11252 -10.98074 -10.91552 -10.85841 -10.56037 -10.35843 -10.24186 -9.86173 -9.71216 -9.49798 -8.89587 -8.64616 -6.71915 -5.99346 -3.56147 -0.52752 0.38190 0.43396 1.10169 1.13985 2.76706 3.00247 3.25589 3.33277 3.33942 3.74839 4.00248 4.14326 4.31948 4.34123 4.44145 4.64553 4.74129 4.89455 4.99327 5.04041 5.10298 5.20697 5.22980 5.25904 5.33702 5.36175 5.47823 5.53863 5.63526 5.75686 5.79733 5.85524 5.89307 6.05582 6.15503 6.18572 6.25633 6.31316 6.46584 6.63598 6.75347 7.07333 7.38764 7.41461 7.63635 8.30587 9.01311 9.58827 10.20441 11.07927 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.003852 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.693663 B = 7267.231992 C = 8759.277470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 C -0.065 4.065 4 C 0.033 3.967 5 N 0.018 4.982 6 O -0.131 6.131 7 O -0.157 6.157 8 C -0.623 4.623 9 S 2.694 3.306 10 O -0.943 6.943 11 O -0.936 6.936 12 N -0.988 5.988 13 C 0.090 3.910 14 C 0.157 3.843 15 N -0.586 5.586 16 C -0.261 4.261 17 H 0.064 0.936 18 C 0.015 3.985 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.129 3.871 25 C 0.095 3.905 26 C -0.024 4.024 27 C -0.044 4.044 28 C -0.130 4.130 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.098 0.902 37 H 0.256 0.744 38 H 0.019 0.981 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.171 0.829 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 8.273 -5.618 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.085 4.085 4 C -0.050 4.050 5 N 0.538 4.462 6 O -0.353 6.353 7 O -0.367 6.367 8 C -0.704 4.704 9 S 2.777 3.223 10 O -0.933 6.933 11 O -0.925 6.925 12 N -0.830 5.830 13 C -0.037 4.037 14 C 0.030 3.970 15 N -0.308 5.308 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.184 4.184 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.001 3.999 25 C -0.032 4.032 26 C -0.042 4.042 27 C -0.045 4.045 28 C -0.186 4.186 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.177 0.823 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.037 0.963 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.188 0.812 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.485 8.258 -5.647 13.786 hybrid contribution -0.256 -0.738 0.476 0.915 sum -9.741 7.520 -5.171 13.349 Atomic orbital electron populations 1.20982 0.88799 1.04225 1.03785 1.20040 0.97375 0.91144 0.96325 1.20955 0.90577 1.00492 0.96482 1.20378 0.92597 0.82011 1.10017 1.43743 1.01321 1.02918 0.98237 1.94488 1.69868 1.19834 1.51117 1.94558 0.95898 1.92888 1.53347 1.31376 1.31539 0.96270 1.11207 1.02587 0.72899 0.72327 0.74508 1.93561 1.79504 1.83441 1.36803 1.93600 1.79128 1.65316 1.54478 1.57657 1.79939 1.31023 1.14349 1.22549 1.03132 0.99219 0.78761 1.21301 0.93909 0.86745 0.95034 1.43780 1.78578 1.09987 0.98499 1.19130 1.13967 0.89427 1.16554 0.91800 1.25340 0.95485 0.97768 0.99854 1.69895 1.22952 1.37999 1.23722 0.86256 0.77875 0.83881 0.78491 1.21225 1.21606 1.20265 1.21400 0.95625 0.93745 0.89143 1.22216 1.01380 0.91569 0.88006 1.21428 0.94448 0.96752 0.91619 1.20452 0.93823 0.96241 0.93998 1.21074 1.00675 0.93111 1.03731 0.89574 0.89844 0.90408 0.82297 0.90685 0.90719 0.95932 0.88370 0.93359 0.96318 0.90915 0.89837 0.90480 0.81168 0.89604 0.88951 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.20 36.01 0.33 -0.42 16 2 C -0.05 -0.49 5.88 -104.63 -0.62 -1.10 16 3 C -0.07 -0.78 9.21 -39.58 -0.36 -1.14 16 4 C 0.03 0.53 6.81 -79.95 -0.54 -0.02 16 5 N 0.02 0.32 4.45 33.96 0.15 0.47 16 6 O -0.13 -2.12 18.47 -29.46 -0.54 -2.66 16 7 O -0.16 -3.15 13.78 -39.44 -0.54 -3.69 16 8 C -0.62 -10.14 5.83 -39.58 -0.23 -10.37 16 9 S 2.69 49.16 3.98 -107.50 -0.43 48.73 16 10 O -0.94 -18.58 15.93 -64.74 -1.03 -19.61 16 11 O -0.94 -19.14 14.57 -67.07 -0.98 -20.12 16 12 N -0.99 -16.97 2.26 -113.01 -0.26 -17.23 16 13 C 0.09 1.60 6.56 -3.37 -0.02 1.58 16 14 C 0.16 3.24 5.12 -3.37 -0.02 3.23 16 15 N -0.59 -12.67 2.93 -171.76 -0.50 -13.17 16 16 C -0.26 -6.36 9.51 -15.06 -0.14 -6.50 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.02 0.38 5.15 -17.43 -0.09 0.29 16 19 N -0.90 -23.28 11.20 55.49 0.62 -22.66 16 20 Si 0.91 19.90 29.56 -169.99 -5.02 14.87 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.13 2.28 6.17 -3.60 -0.02 2.26 16 25 C 0.09 1.53 6.54 -3.60 -0.02 1.51 16 26 C -0.02 -0.34 9.11 -39.58 -0.36 -0.70 16 27 C -0.04 -0.52 5.88 -104.63 -0.62 -1.13 16 28 C -0.13 -1.23 9.19 36.01 0.33 -0.90 16 29 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.42 6.70 -51.93 -0.35 0.08 16 31 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.16 1.46 7.63 -52.49 -0.40 1.06 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.25 7.26 -51.93 -0.38 0.88 16 35 H 0.02 0.47 7.10 -51.93 -0.37 0.10 16 36 H 0.10 2.29 6.36 -51.93 -0.33 1.96 16 37 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.02 0.32 6.32 -51.93 -0.33 -0.01 16 39 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 40 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.17 2.55 3.54 -52.49 -0.19 2.36 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 45 H 0.08 0.59 6.70 -51.93 -0.35 0.24 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -31.43 369.96 -10.88 -42.31 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.53 Total: 0.59 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.39 Total: -13.42 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.01 Total: -52.59 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -3.10 Total: -46.08 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 49.16 SS G_CDS: -0.43 Total: 48.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.43 -10.88 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065626213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.333 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds