Wall clock time and date at job start Tue Mar 31 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47044 * 299.99589 * 3 2 1 6 6 H 1.48504 * 109.47023 * 59.99711 * 3 2 1 7 7 C 1.37881 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99739 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00040 * 263.61169 * 10 9 7 12 12 C 1.50696 * 109.46897 * 274.88104 * 11 10 9 13 13 C 1.34515 * 125.79298 * 90.00373 * 12 11 10 14 14 C 1.41379 * 106.84333 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84096 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42016 * 359.73583 * 15 14 13 17 17 C 1.34780 * 120.00231 * 83.61158 * 10 9 7 18 18 O 1.21574 * 120.00374 * 184.42961 * 17 10 9 19 19 C 1.47673 * 119.99602 * 4.42932 * 17 10 9 20 20 C 1.41532 * 126.43818 * 174.18501 * 19 17 10 21 21 C 1.35362 * 105.55424 * 180.02562 * 20 19 17 22 22 N 1.35858 * 107.12143 * 359.97438 * 21 20 19 23 23 C 1.40113 * 124.95600 * 180.26983 * 22 21 20 24 24 C 1.38894 * 120.05814 * 179.72199 * 23 22 21 25 25 C 1.38103 * 119.98393 * 179.97438 * 24 23 22 26 26 C 1.38270 * 120.09196 * 359.97438 * 25 24 23 27 27 C 1.38485 * 120.11253 * 359.97438 * 26 25 24 28 28 F 1.35097 * 119.98842 * 180.02562 * 27 26 25 29 29 C 1.38356 * 120.01816 * 359.72510 * 27 26 25 30 30 N 1.28479 * 110.08344 * 359.97438 * 22 21 20 31 31 H 0.97004 * 120.00394 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47180 * 60.00375 * 9 7 2 33 33 H 1.09001 * 109.47139 * 299.99559 * 9 7 2 34 34 H 1.08997 * 109.46920 * 34.88478 * 11 10 9 35 35 H 1.08998 * 109.46978 * 154.87957 * 11 10 9 36 36 H 1.08001 * 126.57482 * 0.02760 * 13 12 11 37 37 H 1.08004 * 126.57569 * 179.97438 * 14 13 12 38 38 H 1.08000 * 125.78912 * 180.02562 * 15 14 13 39 39 H 1.07992 * 127.22583 * 0.04606 * 20 19 17 40 40 H 1.08000 * 126.43425 * 180.02562 * 21 20 19 41 41 H 1.07997 * 120.00752 * 0.02562 * 24 23 22 42 42 H 1.07997 * 119.94994 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.93800 * 180.02562 * 26 25 24 44 44 H 1.07995 * 120.04853 * 180.27001 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5717 -4.2612 -1.2604 12 6 1.5557 -5.3225 -1.5952 13 6 0.4376 -5.1404 -2.3206 14 6 -0.2164 -6.3921 -2.3865 15 6 0.5414 -7.2644 -1.6980 16 8 1.6165 -6.6124 -1.2261 17 6 2.7397 -4.0405 1.1605 18 8 3.5895 -4.9099 1.1530 19 6 2.2954 -3.4532 2.4405 20 6 2.6777 -3.8746 3.7364 21 6 2.0275 -3.0518 4.5922 22 7 1.2982 -2.1873 3.8396 23 6 0.4841 -1.1678 4.3505 24 6 -0.2147 -0.3361 3.4850 25 6 -1.0171 0.6680 3.9902 26 6 -1.1263 0.8466 5.3570 27 6 -0.4321 0.0189 6.2234 28 9 -0.5411 0.1953 7.5584 29 6 0.3681 -0.9924 5.7225 30 7 1.4686 -2.4373 2.5909 31 1 -0.4851 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.5970 -3.5180 -2.0573 35 1 3.5557 -4.7191 -1.1592 36 1 0.1041 -4.2155 -2.7676 37 1 -1.1461 -6.6066 -2.8926 38 1 0.3245 -8.3125 -1.5534 39 1 3.3479 -4.6828 3.9894 40 1 2.0796 -3.0772 5.6707 41 1 -0.1314 -0.4751 2.4173 42 1 -1.5606 1.3141 3.3168 43 1 -1.7549 1.6324 5.7494 44 1 0.9063 -1.6409 6.3978 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065627045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:25 Heat of formation + Delta-G solvation = 71.329176 kcal Electronic energy + Delta-G solvation = -33306.543155 eV Core-core repulsion = 28722.355239 eV Total energy + Delta-G solvation = -4584.187917 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.98660 -42.49141 -42.17705 -39.06959 -38.50688 -35.22521 -33.40639 -32.78489 -32.49760 -31.14740 -30.64296 -29.78500 -29.02369 -27.29047 -25.86312 -23.97107 -23.26485 -22.81882 -21.39958 -21.32702 -20.76582 -20.16625 -18.83812 -18.28107 -17.13062 -16.70525 -16.30307 -16.24310 -15.99811 -15.91196 -15.86641 -15.66526 -15.42639 -15.00781 -14.50331 -14.45861 -14.00557 -13.78369 -13.64275 -13.06246 -13.00441 -12.66562 -12.51675 -12.47162 -12.41867 -12.22816 -12.16872 -11.91220 -11.52849 -11.31722 -11.24796 -10.95675 -10.86475 -10.26322 -9.89865 -9.83048 -9.73397 -9.57304 -9.43637 -8.90902 -8.87636 -8.46322 -8.17801 -8.09805 -7.81388 -6.13524 -4.15228 0.79089 1.15164 2.01121 2.30989 2.50609 2.62139 2.92236 3.20014 3.29229 3.34551 3.35770 3.66757 3.93806 4.09610 4.15401 4.35923 4.57132 4.80541 4.88562 4.98265 5.06685 5.14920 5.21088 5.33182 5.35972 5.39558 5.51759 5.55817 5.76197 5.88657 5.93972 6.01529 6.07158 6.07704 6.11639 6.28303 6.37677 6.41969 6.47982 6.67054 6.74345 6.83890 6.86215 7.18657 7.40259 7.50397 7.63672 7.80751 8.13736 8.17477 8.36707 8.83588 8.93975 9.47433 10.93467 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.003494 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.007822 B = 8012.885883 C = 9368.958109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.228 3.772 10 N -0.581 5.581 11 C 0.194 3.806 12 C -0.017 4.017 13 C -0.199 4.199 14 C -0.216 4.216 15 C -0.052 4.052 16 O -0.169 6.169 17 C 0.604 3.396 18 O -0.559 6.559 19 C -0.003 4.003 20 C -0.171 4.171 21 C -0.037 4.037 22 N -0.248 5.248 23 C 0.172 3.828 24 C -0.112 4.112 25 C -0.069 4.069 26 C -0.161 4.161 27 C 0.110 3.890 28 F -0.138 7.138 29 C -0.173 4.173 30 N -0.181 5.181 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.196 0.804 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -3.983 6.157 8.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.109 3.891 10 N -0.311 5.311 11 C 0.070 3.930 12 C -0.068 4.068 13 C -0.219 4.219 14 C -0.235 4.235 15 C -0.120 4.120 16 O -0.065 6.065 17 C 0.391 3.609 18 O -0.437 6.437 19 C -0.165 4.165 20 C -0.199 4.199 21 C -0.174 4.174 22 N -0.030 5.030 23 C 0.081 3.919 24 C -0.131 4.131 25 C -0.087 4.087 26 C -0.180 4.180 27 C 0.090 3.910 28 F -0.117 7.117 29 C -0.195 4.195 30 N -0.012 5.012 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.213 0.787 39 H 0.180 0.820 40 H 0.194 0.806 41 H 0.201 0.799 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.369 -3.617 5.797 7.618 hybrid contribution 0.564 0.583 0.667 1.050 sum -2.805 -3.035 6.464 7.672 Atomic orbital electron populations 1.69925 1.05515 1.26469 1.51215 1.24731 0.94726 0.98328 0.95212 0.86710 0.80514 0.84240 0.77700 1.19918 1.20942 1.20914 1.21401 0.93224 0.90340 1.49621 0.92593 1.19914 0.87696 0.81767 0.99755 1.48190 1.44948 1.33862 1.04053 1.19745 0.94852 0.90366 0.87991 1.23189 1.00203 0.83099 1.00340 1.21678 0.96035 0.99310 1.04871 1.21793 1.02501 0.93616 1.05639 1.23951 0.88012 0.98623 1.01433 1.84085 1.40667 1.20786 1.60914 1.16912 0.80904 0.80860 0.82199 1.90704 1.33014 1.33030 1.86967 1.22026 1.01862 0.97626 0.95000 1.21739 1.04404 1.03022 0.90709 1.22917 1.00146 0.95285 0.99071 1.43114 1.32473 1.22999 1.04464 1.17293 0.93663 0.89506 0.91465 1.21922 0.94175 0.93065 1.03958 1.21019 0.96916 0.96798 0.94015 1.21251 1.02030 1.01005 0.93723 1.17135 0.99456 0.97100 0.77289 1.91497 1.94908 1.94845 1.30420 1.20601 1.03853 1.01257 0.93747 1.74609 1.15786 1.14387 0.96440 0.92968 0.94695 0.91218 0.86952 0.88693 0.83274 0.83864 0.78692 0.82021 0.80562 0.79942 0.83867 0.84443 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.17 12.12 55.43 0.67 -21.49 16 2 C 0.07 1.76 5.37 -17.82 -0.10 1.67 16 3 Si 0.88 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -12.66 8.49 -34.44 -0.29 -12.95 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.23 5.32 4.78 -5.19 -0.02 5.30 16 10 N -0.58 -12.47 2.46 -177.61 -0.44 -12.91 16 11 C 0.19 3.60 5.99 -5.19 -0.03 3.57 16 12 C -0.02 -0.30 6.90 -35.63 -0.25 -0.55 16 13 C -0.20 -3.31 10.81 -39.70 -0.43 -3.74 16 14 C -0.22 -3.14 10.91 -39.71 -0.43 -3.57 16 15 C -0.05 -0.74 12.09 29.41 0.36 -0.38 16 16 O -0.17 -3.02 10.65 5.71 0.06 -2.96 16 17 C 0.60 13.44 7.62 -12.41 -0.09 13.35 16 18 O -0.56 -12.97 16.41 5.30 0.09 -12.89 16 19 C 0.00 -0.07 6.81 -82.76 -0.56 -0.63 16 20 C -0.17 -2.95 10.80 -39.35 -0.43 -3.37 16 21 C -0.04 -0.56 10.78 -16.79 -0.18 -0.74 16 22 N -0.25 -4.51 3.52 -10.55 -0.04 -4.55 16 23 C 0.17 2.86 6.66 -83.62 -0.56 2.31 16 24 C -0.11 -1.96 9.59 -39.39 -0.38 -2.33 16 25 C -0.07 -0.97 10.04 -39.62 -0.40 -1.37 16 26 C -0.16 -1.97 10.02 -39.48 -0.40 -2.37 16 27 C 0.11 1.42 7.30 -39.45 -0.29 1.13 16 28 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 29 C -0.17 -2.34 9.41 -39.33 -0.37 -2.71 16 30 N -0.18 -3.84 7.01 33.42 0.23 -3.60 16 31 H 0.26 6.18 8.31 -40.82 -0.34 5.84 16 32 H 0.04 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.07 1.73 5.31 -51.93 -0.28 1.46 16 34 H 0.11 1.90 8.11 -51.93 -0.42 1.48 16 35 H 0.09 1.74 7.23 -51.93 -0.38 1.36 16 36 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.18 1.88 6.96 -52.49 -0.37 1.51 16 41 H 0.18 3.84 6.35 -52.49 -0.33 3.51 16 42 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.14 1.54 6.65 -52.49 -0.35 1.19 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -29.84 387.75 -8.02 -37.86 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.62 Total: 8.84 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -4.85 Total: -7.39 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.43 Total: -42.55 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.15 Total: -15.85 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.84 -8.02 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065627045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.190 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds