Wall clock time and date at job start Tue Mar 31 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35713 * 116.99591 * 2 1 4 4 C 1.39000 * 119.90928 * 180.02562 * 3 2 1 5 5 C 1.37695 * 120.09094 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.91049 * 0.25366 * 5 4 3 7 7 C 1.47577 * 120.08923 * 179.72358 * 6 5 4 8 8 O 1.21593 * 120.00321 * 329.16041 * 7 6 5 9 9 N 1.34780 * 119.99649 * 149.15730 * 7 6 5 10 10 C 1.46497 * 120.00143 * 7.26638 * 9 7 6 11 11 C 1.50698 * 109.47498 * 99.02767 * 10 9 7 12 12 H 1.08001 * 119.99494 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00494 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99562 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00213 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46952 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46954 * 119.99413 * 15 13 11 18 18 H 1.48492 * 109.47206 * 239.99834 * 15 13 11 19 19 C 1.40024 * 119.99960 * 187.26435 * 9 7 6 20 20 C 1.38864 * 120.02175 * 187.63165 * 19 9 7 21 21 C 1.38129 * 120.03500 * 179.77222 * 20 19 9 22 22 C 1.38722 * 120.16257 * 0.59275 * 21 20 19 23 23 C 1.38991 * 119.93469 * 359.59648 * 22 21 20 24 24 C 1.38645 * 119.88955 * 0.12556 * 23 22 21 25 25 O 1.36118 * 120.78212 * 180.26817 * 23 22 21 26 26 C 1.43170 * 116.72999 * 342.80049 * 25 23 22 27 27 C 1.53476 * 108.24421 * 46.19480 * 26 25 23 28 28 O 1.36200 * 119.31273 * 179.51153 * 22 21 20 29 29 C 1.39743 * 119.81985 * 359.48946 * 6 5 4 30 30 C 1.37702 * 119.91019 * 0.51403 * 29 6 5 31 31 H 1.09000 * 109.47551 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.47467 * 60.00096 * 1 2 3 33 33 H 1.09005 * 109.46799 * 179.97438 * 1 2 3 34 34 H 1.08006 * 119.95331 * 359.97438 * 4 3 2 35 35 H 1.08007 * 120.04846 * 179.97438 * 5 4 3 36 36 H 1.09007 * 109.47152 * 219.02873 * 10 9 7 37 37 H 1.08998 * 109.47041 * 339.02363 * 10 9 7 38 38 H 0.97006 * 120.00214 * 180.02562 * 14 13 11 39 39 H 1.08000 * 119.98344 * 0.05331 * 20 19 9 40 40 H 1.08002 * 119.91825 * 180.26342 * 21 20 19 41 41 H 1.07998 * 119.99123 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.70699 * 165.87899 * 26 25 23 43 43 H 1.09003 * 109.70767 * 286.50857 * 26 25 23 44 44 H 1.09001 * 109.70940 * 59.91623 * 27 26 25 45 45 H 1.09002 * 109.71022 * 180.54793 * 27 26 25 46 46 H 1.07996 * 120.04723 * 180.23178 * 29 6 5 47 47 H 1.07995 * 119.95911 * 179.72278 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 3.4332 1.2799 -0.0005 5 6 4.0621 2.5048 0.0000 6 6 3.3028 3.6780 0.0064 7 6 3.9728 4.9929 0.0132 8 8 5.0546 5.1214 0.5533 9 7 3.3856 6.0514 -0.5795 10 6 2.0169 5.9392 -1.0897 11 6 1.0578 6.5325 -0.0901 12 1 1.4306 6.9509 0.8331 13 6 -0.2955 6.5401 -0.3537 14 7 -0.7493 6.0301 -1.4777 15 14 -1.4843 7.2749 0.8857 16 1 -0.7270 7.7781 2.0599 17 1 -2.2249 8.3974 0.2558 18 1 -2.4460 6.2331 1.3270 19 6 4.0837 7.2585 -0.7075 20 6 3.4308 8.3928 -1.1717 21 6 4.1180 9.5848 -1.2937 22 6 5.4641 9.6501 -0.9649 23 6 6.1213 8.5155 -0.5036 24 6 5.4299 7.3206 -0.3759 25 8 7.4404 8.5614 -0.1710 26 6 8.1901 9.6776 -0.6627 27 6 7.3749 10.9530 -0.4093 28 8 6.1273 10.8319 -1.1012 29 6 1.9075 3.6027 0.0015 30 6 1.2862 2.3738 0.0011 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 4.0194 0.3727 -0.0005 35 1 5.1409 2.5589 0.0000 36 1 1.9360 6.4771 -2.0343 37 1 1.7732 4.8886 -1.2478 38 1 -1.7014 6.0358 -1.6634 39 1 2.3841 8.3440 -1.4333 40 1 3.6074 10.4668 -1.6509 41 1 5.9390 6.4379 -0.0181 42 1 9.1433 9.7401 -0.1377 43 1 8.3657 9.5599 -1.7321 44 1 7.1932 11.0669 0.6594 45 1 7.9208 11.8188 -0.7844 46 1 1.3171 4.5070 0.0027 47 1 0.2078 2.3147 0.0018 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065627073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:26 Heat of formation + Delta-G solvation = -44.538553 kcal Electronic energy + Delta-G solvation = -33599.286645 eV Core-core repulsion = 29101.241880 eV Total energy + Delta-G solvation = -4498.044765 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.00251 -40.36424 -39.45987 -37.39287 -36.92642 -36.54050 -35.21011 -32.87925 -31.18865 -30.58368 -30.36925 -29.55535 -27.95214 -27.55748 -27.02870 -24.48082 -23.65855 -22.81642 -22.54103 -21.86942 -20.53695 -19.44803 -18.18742 -17.88133 -17.40475 -17.12196 -16.79473 -16.28041 -16.00147 -15.63109 -15.55268 -15.09978 -14.78856 -14.70675 -14.57870 -14.28969 -14.10914 -13.87021 -13.61198 -13.50233 -13.23040 -12.89595 -12.88634 -12.59214 -12.48912 -12.26989 -12.22408 -11.75265 -11.47916 -11.41902 -11.26890 -11.00949 -10.96119 -10.86590 -10.78210 -10.37943 -10.32975 -10.02574 -9.80633 -9.01869 -8.87530 -8.81645 -8.51391 -7.99228 -7.89705 -7.00243 -6.41753 -4.53258 1.28162 1.74196 1.82406 1.84944 3.09770 3.18602 3.20473 3.26563 3.32054 3.37512 3.41196 3.71866 4.13406 4.18161 4.37588 4.38670 4.85430 4.87784 4.93797 5.02451 5.06789 5.12355 5.18798 5.23337 5.29082 5.32583 5.47980 5.50710 5.65846 5.66157 5.81401 5.84465 5.93134 5.98042 6.22017 6.29045 6.39257 6.50739 6.59748 6.70366 6.80280 6.82895 6.91148 6.97822 7.04414 7.09096 7.24437 7.49496 7.53197 7.56904 7.72226 7.86379 8.05443 8.56190 8.73403 9.15402 10.61315 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.003294 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.919405 B = 8499.305854 C =11038.734494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.320 6.320 3 C 0.144 3.856 4 C -0.177 4.177 5 C -0.027 4.027 6 C -0.176 4.176 7 C 0.564 3.436 8 O -0.539 6.539 9 N -0.528 5.528 10 C 0.198 3.802 11 C -0.546 4.546 12 H 0.070 0.930 13 C 0.072 3.928 14 N -0.879 5.879 15 Si 0.897 3.103 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.180 3.820 20 C -0.133 4.133 21 C -0.095 4.095 22 C 0.007 3.993 23 C 0.063 3.937 24 C -0.167 4.167 25 O -0.307 6.307 26 C 0.022 3.978 27 C 0.022 3.978 28 O -0.313 6.313 29 C -0.051 4.051 30 C -0.220 4.220 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.270 0.730 39 H 0.153 0.847 40 H 0.132 0.868 41 H 0.183 0.817 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.204 0.796 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 -1.315 -0.190 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.099 3.901 4 C -0.196 4.196 5 C -0.046 4.046 6 C -0.180 4.180 7 C 0.356 3.644 8 O -0.421 6.421 9 N -0.246 5.246 10 C 0.080 3.920 11 C -0.584 4.584 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.515 5.515 15 Si 0.724 3.276 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.083 3.917 20 C -0.154 4.154 21 C -0.114 4.114 22 C -0.038 4.038 23 C 0.018 3.982 24 C -0.187 4.187 25 O -0.222 6.222 26 C -0.054 4.054 27 C -0.054 4.054 28 O -0.228 6.228 29 C -0.068 4.068 30 C -0.239 4.239 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.199 0.801 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.220 0.780 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.758 -1.533 -0.026 7.908 hybrid contribution -0.971 0.757 0.551 1.349 sum 6.787 -0.776 0.525 6.852 Atomic orbital electron populations 1.23070 0.78354 1.03530 1.01973 1.85973 1.21504 1.27445 1.88395 1.19383 0.92411 0.84114 0.94241 1.20169 0.91126 0.98177 1.10102 1.20917 0.99842 0.90177 0.93623 1.19679 0.94267 0.92656 1.11350 1.18360 0.84332 0.84162 0.77532 1.90437 1.22201 1.84458 1.44983 1.45823 1.16720 1.08284 1.53778 1.20626 0.74550 1.00975 0.95871 1.21443 0.91116 1.40711 1.05153 0.91190 1.24962 0.98184 0.94618 0.95589 1.69939 1.15158 1.43317 1.23088 0.86423 0.80661 0.79189 0.81355 1.19302 1.20491 1.20584 1.17553 0.90009 0.86440 0.97667 1.20992 1.01405 0.90108 1.02855 1.20157 0.90064 0.98522 1.02691 1.18840 0.92858 0.84239 1.07816 1.18676 0.83374 0.93452 1.02704 1.21603 0.93397 0.98107 1.05625 1.86300 1.18692 1.45244 1.71936 1.23535 0.95223 0.85907 1.00770 1.23500 0.84868 0.98982 0.98035 1.86269 1.34174 1.33175 1.69183 1.23199 0.94338 1.01152 0.88145 1.21297 1.00355 0.91920 1.10284 0.92450 0.92251 0.88543 0.85233 0.84868 0.93781 0.90513 0.92045 0.82910 0.85050 0.80083 0.86720 0.90946 0.91009 0.86796 0.78031 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.55 10.48 -18.85 -0.20 -4.75 16 3 C 0.14 2.30 6.70 -39.02 -0.26 2.04 16 4 C -0.18 -2.72 9.97 -39.50 -0.39 -3.12 16 5 C -0.03 -0.45 9.59 -39.22 -0.38 -0.82 16 6 C -0.18 -3.42 5.59 -104.96 -0.59 -4.01 16 7 C 0.56 12.02 7.34 -12.45 -0.09 11.93 16 8 O -0.54 -12.04 13.27 5.28 0.07 -11.97 16 9 N -0.53 -11.38 2.71 -115.87 -0.31 -11.69 16 10 C 0.20 4.41 4.02 -5.20 -0.02 4.39 16 11 C -0.55 -12.93 6.60 -34.44 -0.23 -13.16 16 12 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.07 1.71 5.35 -17.82 -0.10 1.61 16 14 N -0.88 -21.50 13.29 55.43 0.74 -20.76 16 15 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.18 3.78 6.44 -83.68 -0.54 3.24 16 20 C -0.13 -2.62 8.95 -39.39 -0.35 -2.97 16 21 C -0.10 -1.69 9.95 -39.44 -0.39 -2.08 16 22 C 0.01 0.13 6.49 -39.12 -0.25 -0.12 16 23 C 0.06 1.18 6.49 -39.15 -0.25 0.93 16 24 C -0.17 -3.44 8.88 -39.23 -0.35 -3.79 16 25 O -0.31 -5.16 10.42 -32.90 -0.34 -5.50 16 26 C 0.02 0.25 7.26 37.40 0.27 0.52 16 27 C 0.02 0.25 7.26 37.40 0.27 0.52 16 28 O -0.31 -4.88 10.42 -33.16 -0.35 -5.22 16 29 C -0.05 -1.00 7.47 -39.22 -0.29 -1.29 16 30 C -0.22 -3.77 9.01 -39.50 -0.36 -4.13 16 31 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 32 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.13 2.04 7.93 -52.48 -0.42 1.62 16 36 H 0.04 1.03 7.10 -51.93 -0.37 0.66 16 37 H 0.08 1.73 3.94 -52.44 -0.21 1.52 16 38 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 39 H 0.15 3.11 6.04 -52.49 -0.32 2.79 16 40 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.18 3.96 4.75 -54.96 -0.26 3.70 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.20 4.39 3.17 -52.49 -0.17 4.22 16 47 H 0.13 2.06 6.28 -52.49 -0.33 1.73 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -28.44 382.06 -8.33 -36.77 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.36 Total: 12.42 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.31 Total: -9.04 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.42 Total: -32.45 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.82 Total: -27.44 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.44 -8.33 -36.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065627073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.766 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds