Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31727 * 122.22779 * 2 1 4 4 C 1.30016 * 117.08617 * 179.97438 * 3 2 1 5 5 N 1.38496 * 125.36742 * 180.02562 * 4 3 2 6 6 S 1.65603 * 120.00173 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40446 * 311.46025 * 6 5 4 8 8 O 1.42101 * 106.40400 * 178.53780 * 6 5 4 9 9 C 1.76203 * 107.21747 * 64.99729 * 6 5 4 10 10 C 1.38234 * 120.00235 * 90.00062 * 9 6 5 11 11 C 1.38234 * 120.00240 * 179.97438 * 10 9 6 12 12 C 1.38233 * 120.00037 * 0.26327 * 11 10 9 13 13 C 1.50693 * 120.00207 * 179.72405 * 12 11 10 14 14 C 1.38239 * 119.99756 * 359.45918 * 12 11 10 15 15 C 1.38234 * 119.99992 * 0.53603 * 14 12 11 16 16 S 1.76138 * 109.26702 * 0.26686 * 4 3 2 17 17 C 1.34569 * 122.22520 * 179.97438 * 2 1 3 18 18 S 1.76188 * 125.91615 * 0.02562 * 17 2 1 19 19 C 1.76195 * 100.00324 * 180.02562 * 18 17 2 20 20 H 1.08003 * 119.99967 * 359.97438 * 19 18 17 21 21 C 1.38379 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31843 * 120.00288 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46909 * 60.00046 * 23 21 19 25 25 H 1.48498 * 109.47556 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47286 * 300.00641 * 23 21 19 27 27 H 1.08997 * 109.46953 * 90.01954 * 1 2 3 28 28 H 1.09000 * 109.46919 * 210.01937 * 1 2 3 29 29 H 1.09002 * 109.46626 * 330.02144 * 1 2 3 30 30 H 0.97001 * 120.00329 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.99751 * 359.97438 * 10 9 6 32 32 H 1.08002 * 119.99744 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47363 * 89.99511 * 13 12 11 34 34 H 1.09000 * 109.47097 * 209.99342 * 13 12 11 35 35 H 1.09001 * 109.47081 * 329.99847 * 13 12 11 36 36 H 1.08000 * 119.99962 * 180.30225 * 14 12 11 37 37 H 1.08002 * 120.00264 * 179.76377 * 15 14 12 38 38 H 0.96992 * 120.00024 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2095 1.1143 0.0000 4 6 3.5044 0.9978 0.0005 5 7 4.4040 2.0508 0.0011 6 16 6.0323 1.7488 0.0024 7 8 6.2615 0.7883 1.0242 8 8 6.6754 3.0155 -0.0320 9 6 6.4165 0.9541 -1.5226 10 6 6.7655 1.7091 -2.6268 11 6 7.0675 1.0856 -3.8230 12 6 7.0152 -0.2926 -3.9166 13 6 7.3383 -0.9719 -5.2223 14 6 6.6718 -1.0479 -2.8109 15 6 6.3699 -0.4244 -1.6147 16 16 3.9343 -0.7103 -0.0067 17 6 2.2246 -1.1384 0.0005 18 16 1.5686 -2.7736 0.0006 19 6 3.0651 -3.7037 0.0021 20 1 4.0174 -3.1944 0.0023 21 6 3.0201 -5.0868 0.0032 22 7 1.8576 -5.7086 0.0025 23 14 4.6067 -6.0728 0.0041 24 1 5.3965 -5.7386 1.2165 25 1 4.2882 -7.5232 0.0045 26 1 5.3969 -5.7403 -1.2085 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 4.0804 2.9652 0.0008 31 1 6.8022 2.7860 -2.5548 32 1 7.3397 1.6756 -4.6857 33 1 8.4051 -1.1918 -5.2633 34 1 6.7728 -1.9006 -5.2984 35 1 7.0708 -0.3147 -6.0498 36 1 6.6357 -2.1249 -2.8827 37 1 6.0979 -1.0143 -0.7518 38 1 1.8261 -6.6780 0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066253613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -11.607322 kcal Electronic energy + Delta-G solvation = -26314.151477 eV Core-core repulsion = 22501.392311 eV Total energy + Delta-G solvation = -3812.759166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 370.027 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.48576 -38.93999 -37.45306 -36.06549 -35.17380 -33.23692 -32.93396 -31.21801 -30.34811 -27.52194 -27.23414 -25.89082 -23.50312 -23.05221 -22.13705 -20.55397 -19.54383 -18.55401 -18.25523 -17.57833 -16.97558 -16.08976 -15.85595 -15.62788 -15.21704 -15.00908 -14.65960 -14.44476 -14.37369 -14.06424 -13.80237 -13.36226 -12.98714 -12.67859 -12.55016 -12.47991 -12.41484 -12.35158 -12.22901 -12.17605 -11.95878 -11.52254 -11.42568 -11.35582 -11.17820 -11.13021 -10.81675 -10.60913 -10.40310 -9.71784 -9.32284 -9.26588 -9.20684 -8.93125 -8.83240 -7.98997 -6.70870 -6.64794 -4.40002 0.06123 0.64387 1.14859 1.33301 1.51839 2.16765 2.67971 2.93097 3.02610 3.07078 3.19286 3.24885 3.42268 3.62478 3.86286 4.13162 4.54315 4.60061 4.71968 4.75454 4.90790 4.94093 5.09528 5.16071 5.31519 5.42426 5.47847 5.53102 5.74974 5.81359 5.88189 5.91915 6.03132 6.15645 6.21023 6.29630 6.37799 6.64460 6.69785 7.00968 7.20265 7.90775 8.35597 8.76842 10.34775 Molecular weight = 370.03amu Principal moments of inertia in cm(-1) A = 0.008529 B = 0.004599 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.231629 B = 6086.371905 C = 7867.577870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.019 3.981 3 N -0.461 5.461 4 C 0.221 3.779 5 N -1.004 6.004 6 S 2.686 3.314 7 O -0.930 6.930 8 O -0.946 6.946 9 C -0.688 4.688 10 C -0.012 4.012 11 C -0.147 4.147 12 C -0.025 4.025 13 C -0.124 4.124 14 C -0.136 4.136 15 C 0.001 3.999 16 S 0.109 5.891 17 C -0.217 4.217 18 S 0.161 5.839 19 C -0.560 4.560 20 H 0.088 0.912 21 C 0.084 3.916 22 N -0.860 5.860 23 Si 0.922 3.078 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.267 1.267 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.430 0.570 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 10.467 -7.667 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.181 5.181 4 C -0.154 4.154 5 N -0.758 5.758 6 S 2.776 3.224 7 O -0.919 6.919 8 O -0.936 6.936 9 C -0.777 4.777 10 C -0.032 4.032 11 C -0.166 4.166 12 C -0.025 4.025 13 C -0.181 4.181 14 C -0.155 4.155 15 C -0.020 4.020 16 S 0.353 5.647 17 C -0.453 4.453 18 S 0.412 5.588 19 C -0.708 4.708 20 H 0.106 0.894 21 C -0.128 4.128 22 N -0.493 5.493 23 Si 0.747 3.253 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.192 1.192 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.268 0.732 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.573 9.696 -6.974 14.142 hybrid contribution 1.048 0.015 -0.629 1.223 sum 8.621 9.711 -7.603 15.048 Atomic orbital electron populations 1.20142 0.87577 1.02419 1.02006 1.19160 0.97007 0.84387 1.11870 1.65927 1.02627 1.31852 1.17731 1.23316 0.90517 0.90804 1.10745 1.52669 1.23294 1.13164 1.86690 1.02295 0.71263 0.74084 0.74753 1.93672 1.82608 1.62240 1.53418 1.93613 1.71444 1.41099 1.87421 1.30631 1.20267 1.05283 1.21500 1.20837 0.91481 0.99740 0.91103 1.21118 1.03195 0.94218 0.98044 1.20312 0.92644 0.93929 0.95644 1.20959 1.02494 1.01126 0.93519 1.21237 1.01127 1.00821 0.92285 1.21073 0.89884 0.92221 0.98801 1.85201 1.06930 0.96948 1.75655 1.28415 0.97222 1.07066 1.12618 1.83147 1.10753 0.83846 1.81024 1.23196 0.93394 0.94075 1.60168 0.89405 1.25015 0.98307 0.96636 0.92819 1.70001 1.24405 1.10574 1.44280 0.86117 0.81136 0.78329 0.79745 1.18994 1.20243 1.19206 0.91642 0.90868 0.91622 0.73196 0.84245 0.85019 0.90319 0.90597 0.90946 0.84485 0.83790 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.02 36.01 0.36 -0.66 16 2 C 0.02 0.37 6.73 -83.94 -0.57 -0.19 16 3 N -0.46 -9.00 10.56 -9.86 -0.10 -9.10 16 4 C 0.22 4.09 8.28 -87.52 -0.72 3.37 16 5 N -1.00 -14.90 5.85 30.82 0.18 -14.72 16 6 S 2.69 39.99 5.37 -107.50 -0.58 39.41 16 7 O -0.93 -16.47 15.71 -57.17 -0.90 -17.37 16 8 O -0.95 -14.29 17.28 -57.17 -0.99 -15.28 16 9 C -0.69 -9.71 5.78 -39.58 -0.23 -9.94 16 10 C -0.01 -0.15 9.52 -39.58 -0.38 -0.52 16 11 C -0.15 -1.55 9.70 -39.58 -0.38 -1.94 16 12 C -0.02 -0.28 5.88 -104.63 -0.62 -0.89 16 13 C -0.12 -1.00 10.01 36.00 0.36 -0.64 16 14 C -0.14 -1.79 9.70 -39.58 -0.38 -2.17 16 15 C 0.00 0.01 7.84 -39.58 -0.31 -0.30 16 16 S 0.11 2.21 15.07 -107.50 -1.62 0.59 16 17 C -0.22 -4.72 6.67 29.43 0.20 -4.53 16 18 S 0.16 3.81 20.73 -107.50 -2.23 1.58 16 19 C -0.56 -14.28 9.26 30.78 0.29 -14.00 16 20 H 0.09 2.17 5.97 -52.48 -0.31 1.86 16 21 C 0.08 2.12 5.49 -17.49 -0.10 2.02 16 22 N -0.86 -22.59 13.22 55.47 0.73 -21.85 16 23 Si 0.92 19.42 29.55 -169.99 -5.02 14.40 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.43 5.13 8.95 -34.47 -0.31 4.82 16 31 H 0.14 1.36 7.62 -52.49 -0.40 0.96 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.14 2.33 5.29 -46.96 -0.25 2.08 16 38 H 0.28 6.83 8.32 -40.82 -0.34 6.49 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -31.18 359.78 -11.33 -42.50 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.74 Total: 4.82 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.48 Total: -30.39 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.81 Total: -45.67 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.89 Total: -32.65 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -4.43 Total: 41.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.18 -11.33 -42.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066253613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.895 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds