Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46490 * 109.46878 * 2 1 4 4 C 1.36703 * 120.00458 * 96.73410 * 3 2 1 5 5 H 1.07990 * 120.00289 * 160.61085 * 4 3 2 6 6 C 1.39172 * 119.99474 * 340.61074 * 4 3 2 7 7 N 1.31290 * 120.00124 * 358.09420 * 6 4 3 8 8 Si 1.86799 * 119.99938 * 178.08834 * 6 4 3 9 9 H 1.48500 * 109.46802 * 60.00290 * 8 6 4 10 10 H 1.48496 * 109.47150 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46991 * 300.00338 * 8 6 4 12 12 C 1.34777 * 120.00154 * 276.72890 * 3 2 1 13 13 O 1.21589 * 120.00498 * 184.39303 * 12 3 2 14 14 C 1.47805 * 119.99882 * 4.40232 * 12 3 2 15 15 C 1.39254 * 121.04409 * 296.74685 * 14 12 3 16 16 C 1.39708 * 119.10901 * 179.97438 * 15 14 12 17 17 C 1.48155 * 119.30319 * 179.97438 * 16 15 14 18 18 C 1.46800 * 127.13062 * 359.68992 * 17 16 15 19 19 C 1.34315 * 106.00627 * 179.83050 * 18 17 16 20 20 C 1.50698 * 125.48742 * 180.14456 * 19 18 17 21 21 O 1.34177 * 109.03236 * 0.43377 * 19 18 17 22 22 C 1.33971 * 110.78757 * 359.71322 * 21 19 18 23 23 C 1.50702 * 125.77679 * 179.97438 * 22 21 19 24 24 N 1.32494 * 121.40007 * 359.78248 * 16 15 14 25 25 C 1.32344 * 121.96045 * 0.45718 * 24 16 15 26 26 O 1.34872 * 132.95511 * 179.85767 * 25 24 16 27 27 N 1.41315 * 109.39410 * 179.71189 * 26 25 24 28 28 C 1.29892 * 109.71672 * 0.02562 * 27 26 25 29 29 C 1.50693 * 126.32239 * 179.97438 * 28 27 26 30 30 C 1.40565 * 120.17903 * 359.54216 * 25 24 16 31 31 H 1.09003 * 109.47023 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46998 * 300.00005 * 1 2 3 33 33 H 1.08994 * 109.47149 * 60.00397 * 1 2 3 34 34 H 1.08999 * 109.46998 * 239.99995 * 2 1 3 35 35 H 1.09001 * 109.47154 * 120.00001 * 2 1 3 36 36 H 0.96990 * 120.00127 * 179.97438 * 7 6 4 37 37 H 1.08001 * 120.44940 * 0.02562 * 15 14 12 38 38 H 1.07996 * 126.99681 * 359.97347 * 18 17 16 39 39 H 1.08997 * 109.47758 * 180.31306 * 20 19 18 40 40 H 1.09007 * 109.47197 * 300.31377 * 20 19 18 41 41 H 1.09004 * 109.47091 * 60.30600 * 20 19 18 42 42 H 1.09003 * 109.47033 * 270.01396 * 23 22 21 43 43 H 1.08994 * 109.47549 * 30.02161 * 23 22 21 44 44 H 1.09004 * 109.47056 * 150.02382 * 23 22 21 45 45 H 1.09000 * 109.47221 * 264.26246 * 29 28 27 46 46 H 1.09006 * 109.47347 * 24.26879 * 29 28 27 47 47 H 1.09007 * 109.46943 * 144.26485 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3770 1.9794 1.1757 5 1 3.0153 2.8505 1.1656 6 6 1.9196 1.4658 2.3856 7 7 1.1135 0.4296 2.3961 8 14 2.4528 2.2507 3.9946 9 1 2.0185 3.6706 4.0205 10 1 1.8326 1.5221 5.1302 11 1 3.9316 2.1832 4.1122 12 6 2.1140 2.0621 -1.1591 13 8 2.5937 3.1793 -1.1702 14 6 1.6356 1.4509 -2.4170 15 6 2.2253 0.2956 -2.9238 16 6 1.7405 -0.2482 -4.1158 17 6 2.3651 -1.4768 -4.6592 18 6 3.4855 -2.2305 -4.0832 19 6 3.7024 -3.2639 -4.9133 20 6 4.7590 -4.3232 -4.7340 21 8 2.8309 -3.1976 -5.9314 22 6 2.0235 -2.1370 -5.7979 23 6 0.9232 -1.7420 -6.7490 24 7 0.7315 0.3095 -4.7689 25 6 0.1383 1.4098 -4.3342 26 8 -0.8820 2.1528 -4.8093 27 7 -1.1188 3.2381 -3.9357 28 6 -0.2832 3.1913 -2.9423 29 6 -0.2047 4.1656 -1.7953 30 6 0.5662 2.0194 -3.1421 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.7951 0.0714 3.2393 37 1 3.0459 -0.1742 -2.4019 38 1 4.0240 -2.0020 -3.1754 39 1 4.7076 -5.0316 -5.5609 40 1 5.7435 -3.8554 -4.7171 41 1 4.5906 -4.8490 -3.7941 42 1 1.3239 -1.0731 -7.5105 43 1 0.5175 -2.6342 -7.2260 44 1 0.1322 -1.2330 -6.1982 45 1 0.5547 4.9178 -2.0089 46 1 -1.1714 4.6520 -1.6648 47 1 0.0595 3.6316 -0.8825 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = 74.511976 kcal Electronic energy + Delta-G solvation = -34308.181021 eV Core-core repulsion = 29847.591426 eV Total energy + Delta-G solvation = -4460.589595 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.57806 -41.71556 -39.23073 -38.12526 -35.40266 -34.44842 -33.49791 -33.18628 -32.40893 -31.40424 -30.13791 -29.62006 -29.15689 -28.39446 -25.88528 -25.13641 -23.99568 -23.53474 -22.26622 -21.61440 -20.84349 -19.80592 -18.94422 -17.86018 -17.25895 -16.81975 -16.49418 -16.44364 -16.31907 -16.06812 -15.19791 -14.51628 -14.38573 -14.23678 -13.85106 -13.56196 -13.54947 -13.44670 -13.31061 -13.12303 -13.01811 -12.95867 -12.79926 -12.75171 -12.59653 -12.51261 -12.42538 -12.33884 -11.87238 -11.64770 -11.54580 -11.22781 -11.14196 -10.93786 -10.69199 -10.51658 -10.37045 -10.18073 -10.07396 -9.63814 -9.17366 -9.10084 -8.79691 -8.64347 -8.05808 -7.92806 -6.50687 -4.11644 0.36243 1.17529 1.68777 2.04647 2.28687 2.56706 2.73132 3.02509 3.11547 3.13853 3.48897 3.77096 3.88420 3.95718 4.34502 4.37568 4.41480 4.59344 4.75122 4.81284 4.90215 5.07910 5.12364 5.21759 5.26483 5.26737 5.40625 5.44245 5.53697 5.57740 5.71330 5.73142 5.79402 5.85488 5.90229 5.99726 6.09049 6.12581 6.25729 6.31405 6.39994 6.45562 6.51606 6.56735 6.68215 7.07765 7.13910 7.30354 7.30871 7.53277 7.77383 7.83092 8.24636 8.88034 9.10810 9.65105 10.40880 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.003750 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.980501 B = 7465.543808 C = 9807.000147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 N -0.414 5.414 4 C -0.298 4.298 5 H 0.106 0.894 6 C 0.031 3.969 7 N -0.865 5.865 8 Si 0.934 3.066 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.462 3.538 13 O -0.575 6.575 14 C 0.057 3.943 15 C -0.180 4.180 16 C 0.277 3.723 17 C -0.157 4.157 18 C -0.182 4.182 19 C -0.016 4.016 20 C -0.072 4.072 21 O -0.179 6.179 22 C 0.057 3.943 23 C -0.078 4.078 24 N -0.492 5.492 25 C 0.299 3.701 26 O -0.091 6.091 27 N -0.295 5.295 28 C 0.168 3.832 29 C -0.086 4.086 30 C -0.229 4.229 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.016 0.984 34 H 0.035 0.965 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -8.307 -9.613 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 N -0.130 5.130 4 C -0.426 4.426 5 H 0.124 0.876 6 C -0.173 4.173 7 N -0.505 5.505 8 Si 0.760 3.240 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.250 3.750 13 O -0.461 6.461 14 C 0.044 3.956 15 C -0.201 4.201 16 C 0.138 3.862 17 C -0.160 4.160 18 C -0.201 4.201 19 C -0.064 4.064 20 C -0.129 4.129 21 O -0.076 6.076 22 C 0.005 3.995 23 C -0.135 4.135 24 N -0.214 5.214 25 C 0.115 3.885 26 O -0.093 6.093 27 N -0.045 5.045 28 C -0.012 4.012 29 C -0.144 4.144 30 C -0.236 4.236 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.824 -7.814 -11.054 13.562 hybrid contribution 0.972 0.242 1.976 2.215 sum 1.795 -7.572 -9.078 11.957 Atomic orbital electron populations 1.22098 0.96586 1.00063 1.01318 1.21837 0.94783 0.83141 1.01640 1.43733 1.52885 1.11172 1.05199 1.19793 1.27934 1.13064 0.81824 0.87589 1.25452 0.95435 0.96416 1.00002 1.69962 1.30760 1.22280 1.27449 0.85853 0.79008 0.79288 0.79805 1.19587 1.20733 1.19684 1.17630 0.87726 0.86438 0.83182 1.90665 1.50240 1.19481 1.85674 1.20234 0.89734 0.91155 0.94462 1.21984 1.03657 0.96943 0.97519 1.18570 0.87963 0.90556 0.89116 1.19441 1.01148 0.97427 0.97935 1.22484 0.99400 0.95939 1.02303 1.22183 0.95426 1.00159 0.88656 1.20316 0.94080 0.94978 1.03490 1.83759 1.38283 1.42172 1.43427 1.22779 0.93654 0.86170 0.96921 1.20619 0.94068 1.01585 0.97182 1.66315 1.11206 1.09179 1.34695 1.20103 0.89013 0.90138 0.89248 1.89176 1.43602 1.33532 1.43005 1.80038 1.20130 1.01309 1.02987 1.24485 0.89094 0.93170 0.94459 1.20566 1.03669 0.96742 0.93384 1.21176 1.02979 0.99636 0.99790 0.94185 0.89171 0.96467 0.94652 0.86314 0.91734 0.83320 0.82469 0.90641 0.89590 0.89505 0.89770 0.91026 0.86769 0.88093 0.90087 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.55 37.16 0.35 -2.58 16 2 C 0.11 2.29 5.04 -4.04 -0.02 2.26 16 3 N -0.41 -9.61 2.63 -115.91 -0.30 -9.92 16 4 C -0.30 -7.36 9.40 -15.03 -0.14 -7.50 16 5 H 0.11 2.74 7.29 -52.49 -0.38 2.35 16 6 C 0.03 0.72 5.30 -17.44 -0.09 0.62 16 7 N -0.87 -19.94 7.85 55.51 0.44 -19.50 16 8 Si 0.93 18.65 29.55 -169.99 -5.02 13.63 16 9 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 10 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 C 0.46 10.60 5.65 -12.35 -0.07 10.53 16 13 O -0.57 -14.58 15.86 5.29 0.08 -14.50 16 14 C 0.06 1.16 4.08 -104.50 -0.43 0.73 16 15 C -0.18 -3.19 7.48 -38.66 -0.29 -3.48 16 16 C 0.28 4.66 6.75 -82.96 -0.56 4.10 16 17 C -0.16 -2.31 6.26 -103.17 -0.65 -2.95 16 18 C -0.18 -2.28 10.39 -37.51 -0.39 -2.67 16 19 C -0.02 -0.18 7.29 -35.69 -0.26 -0.44 16 20 C -0.07 -0.51 10.41 36.00 0.37 -0.13 16 21 O -0.18 -2.26 10.54 6.93 0.07 -2.18 16 22 C 0.06 0.76 7.37 -35.12 -0.26 0.50 16 23 C -0.08 -0.87 9.82 36.01 0.35 -0.52 16 24 N -0.49 -8.63 7.69 -9.57 -0.07 -8.70 16 25 C 0.30 5.69 8.63 -16.45 -0.14 5.55 16 26 O -0.09 -1.73 12.06 7.56 0.09 -1.64 16 27 N -0.30 -5.54 12.82 34.83 0.45 -5.09 16 28 C 0.17 3.15 7.45 -80.26 -0.60 2.55 16 29 C -0.09 -1.45 9.35 36.00 0.34 -1.11 16 30 C -0.23 -4.55 6.08 -104.76 -0.64 -5.19 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 2.04 6.27 -51.93 -0.33 1.72 16 33 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.04 0.67 4.98 -51.93 -0.26 0.41 16 35 H 0.12 2.66 5.83 -51.93 -0.30 2.36 16 36 H 0.27 6.00 8.31 -40.82 -0.34 5.66 16 37 H 0.15 2.40 6.50 -52.49 -0.34 2.06 16 38 H 0.16 1.72 7.55 -52.49 -0.40 1.33 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.11 1.44 6.20 -51.93 -0.32 1.12 16 45 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.10 1.94 6.90 -51.93 -0.36 1.58 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -28.27 388.80 -7.10 -35.38 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.58 Total: 6.40 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.11 Total: 0.28 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.50 Total: -43.22 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.25 Total: -18.33 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.27 -7.10 -35.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.890 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds