Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99711 * 3 2 1 5 5 H 1.48500 * 109.47191 * 29.99624 * 3 2 1 6 6 H 1.48501 * 109.47289 * 150.00241 * 3 2 1 7 7 C 1.37877 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 C 1.52997 * 109.47266 * 180.02562 * 19 17 10 21 21 C 1.53010 * 109.46938 * 179.97438 * 20 19 17 22 22 N 1.46502 * 109.46910 * 179.97438 * 21 20 19 23 23 C 1.34769 * 119.99750 * 179.97438 * 22 21 20 24 24 O 1.21558 * 120.00119 * 0.02562 * 23 22 21 25 25 C 1.47841 * 120.00055 * 180.02562 * 23 22 21 26 26 C 1.39573 * 120.14635 * 359.72211 * 25 23 22 27 27 C 1.37959 * 119.85625 * 179.74755 * 26 25 23 28 28 C 1.38363 * 120.14251 * 0.52967 * 27 26 25 29 29 C 1.38354 * 120.29158 * 359.74863 * 28 27 26 30 30 C 1.37952 * 120.14674 * 359.97092 * 29 28 27 31 31 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 33 33 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 34 34 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 35 35 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 36 36 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 37 37 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 38 38 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.46469 * 300.00239 * 19 17 10 40 40 H 1.09002 * 109.46873 * 59.99721 * 19 17 10 41 41 H 1.09006 * 109.46912 * 299.99482 * 20 19 17 42 42 H 1.09002 * 109.47551 * 59.99954 * 20 19 17 43 43 H 1.08994 * 109.46637 * 299.99814 * 21 20 19 44 44 H 1.09002 * 109.46984 * 59.99673 * 21 20 19 45 45 H 0.96996 * 120.00090 * 0.02562 * 22 21 20 46 46 H 1.08008 * 120.07441 * 0.02562 * 26 25 23 47 47 H 1.08008 * 119.92965 * 180.27655 * 27 26 25 48 48 H 1.07996 * 119.85234 * 179.72043 * 28 27 26 49 49 H 1.08001 * 119.92389 * 180.02562 * 29 28 27 50 50 H 1.08006 * 120.07444 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.2446 -3.2666 -1.2660 12 6 2.9889 -3.9773 -1.7011 13 6 2.0187 -3.4577 -2.4745 14 6 1.0373 -4.4633 -2.6311 15 6 1.4667 -5.5373 -1.9447 16 8 2.6516 -5.2388 -1.3872 17 6 4.2241 -3.2098 1.1698 18 8 4.0219 -2.6373 2.2198 19 6 4.7259 -4.6308 1.1710 20 6 4.8948 -5.1109 2.6139 21 6 5.4038 -6.5538 2.6150 22 7 5.5661 -7.0133 3.9966 23 6 6.0063 -8.2628 4.2438 24 8 6.2691 -9.0085 3.3204 25 6 6.1696 -8.7268 5.6380 26 6 5.8743 -7.8713 6.7005 27 6 6.0238 -8.3121 7.9992 28 6 6.4759 -9.5956 8.2495 29 6 6.7760 -10.4467 7.2008 30 6 6.6253 -10.0203 5.8976 31 1 -0.4851 0.8401 -0.0004 32 1 3.8745 -0.6799 0.8912 33 1 3.8752 -0.6804 -0.8888 34 1 4.5330 -2.5404 -2.0260 35 1 5.0464 -3.9932 -1.1349 36 1 1.9945 -2.4636 -2.8957 37 1 0.1189 -4.3842 -3.1941 38 1 0.9485 -6.4811 -1.8594 39 1 4.0078 -5.2701 0.6574 40 1 5.6862 -4.6774 0.6574 41 1 5.6128 -4.4716 3.1278 42 1 3.9343 -5.0644 3.1271 43 1 4.6855 -7.1927 2.1012 44 1 6.3642 -6.6007 2.1016 45 1 5.3560 -6.4184 4.7334 46 1 5.5251 -6.8678 6.5065 47 1 5.7914 -7.6526 8.8223 48 1 6.5956 -9.9343 9.2680 49 1 7.1281 -11.4475 7.4030 50 1 6.8595 -10.6859 5.0798 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069388569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = -27.735323 kcal Electronic energy + Delta-G solvation = -32373.296003 eV Core-core repulsion = 27946.387064 eV Total energy + Delta-G solvation = -4426.908938 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05966 -40.42886 -39.27461 -38.52994 -35.88142 -35.25877 -33.09859 -32.54620 -32.43869 -31.38618 -31.25266 -30.14738 -28.50014 -26.75007 -25.31671 -24.06956 -23.00954 -22.47820 -21.44976 -21.23319 -20.62819 -20.26080 -18.53424 -18.34395 -17.30414 -16.90122 -16.53942 -16.45162 -16.04247 -15.95620 -15.57519 -15.30127 -15.04249 -15.00402 -14.78866 -14.43279 -14.01558 -13.92799 -13.60647 -13.60311 -13.00498 -12.92732 -12.77429 -12.40465 -12.36350 -12.25170 -12.17809 -12.05710 -11.97514 -11.64353 -11.56646 -11.45538 -11.30958 -11.01897 -10.83743 -10.58254 -10.18428 -10.15636 -9.61703 -9.46016 -9.39010 -9.30537 -9.17660 -9.10667 -8.59208 -8.11650 -7.79997 -6.07043 -4.05121 0.49612 0.96854 2.14165 2.61327 2.90078 3.08846 3.24245 3.24620 3.34118 3.36814 3.49717 3.54281 3.84740 4.36266 4.38915 4.41878 4.54102 4.72295 4.75580 4.96879 4.98035 5.04784 5.06408 5.09643 5.17757 5.25421 5.36501 5.41451 5.47086 5.54814 5.57860 5.59145 5.66597 5.73744 5.78791 5.91703 5.99730 6.04224 6.12525 6.14085 6.28723 6.31077 6.47946 6.49835 6.54196 6.59642 6.91712 7.01910 7.21928 7.26701 7.59684 7.60353 7.97463 8.10417 8.47464 8.85653 9.00811 9.52578 11.06043 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.001942 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.817574 B =14412.550855 C =15952.339814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.214 3.786 10 N -0.591 5.591 11 C 0.197 3.803 12 C -0.038 4.038 13 C -0.161 4.161 14 C -0.209 4.209 15 C -0.052 4.052 16 O -0.181 6.181 17 C 0.513 3.487 18 O -0.535 6.535 19 C -0.140 4.140 20 C -0.115 4.115 21 C 0.119 3.881 22 N -0.723 5.723 23 C 0.556 3.444 24 O -0.539 6.539 25 C -0.134 4.134 26 C -0.086 4.086 27 C -0.127 4.127 28 C -0.096 4.096 29 C -0.129 4.129 30 C -0.061 4.061 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.195 0.805 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.402 0.598 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.126 0.874 49 H 0.129 0.871 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.077 -17.507 7.352 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.093 3.907 10 N -0.323 5.323 11 C 0.073 3.927 12 C -0.088 4.088 13 C -0.181 4.181 14 C -0.228 4.228 15 C -0.120 4.120 16 O -0.078 6.078 17 C 0.300 3.700 18 O -0.412 6.412 19 C -0.180 4.180 20 C -0.153 4.153 21 C -0.004 4.004 22 N -0.375 5.375 23 C 0.343 3.657 24 O -0.417 6.417 25 C -0.137 4.137 26 C -0.105 4.105 27 C -0.145 4.145 28 C -0.115 4.115 29 C -0.147 4.147 30 C -0.080 4.080 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.212 0.788 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.237 0.763 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.147 0.853 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.182 -17.738 7.408 23.308 hybrid contribution -0.404 1.393 0.119 1.455 sum 12.778 -16.345 7.527 22.070 Atomic orbital electron populations 1.69896 1.06133 1.26755 1.50660 1.24846 0.94711 0.98700 0.94751 0.86944 0.80658 0.84260 0.78428 1.20211 1.21074 1.18929 1.21300 0.88910 0.94867 1.50753 0.90432 1.19748 0.96148 0.77345 0.97429 1.48044 1.64732 1.15542 1.03967 1.19813 0.90183 0.94965 0.87752 1.22826 1.00922 0.83191 1.01891 1.21574 0.93850 1.00317 1.02322 1.21808 1.01704 0.94069 1.05260 1.23828 0.86835 1.01030 1.00329 1.83925 1.33969 1.29444 1.60418 1.20342 0.77991 0.87806 0.83827 1.90671 1.52010 1.67735 1.30812 1.21628 1.03051 0.95224 0.98142 1.21509 1.03139 0.93777 0.96900 1.21454 1.01686 0.95251 0.82034 1.45941 1.67508 1.14382 1.09637 1.18283 0.77069 0.81681 0.88620 1.90776 1.50482 1.54688 1.45736 1.20000 1.04973 0.95962 0.92784 1.21383 0.97466 0.99142 0.92507 1.21152 1.00265 0.96465 0.96648 1.21403 0.96794 0.93813 0.99454 1.21183 1.00960 1.00267 0.92319 1.21313 0.94814 0.94490 0.97377 0.92708 0.93950 0.95680 0.87562 0.89705 0.83395 0.84036 0.78827 0.88408 0.89164 0.90511 0.90322 0.91021 0.91168 0.76274 0.85425 0.85253 0.85554 0.85293 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.34 9.69 -34.44 -0.33 -14.68 16 8 H 0.08 2.41 7.90 -52.49 -0.41 1.99 16 9 C 0.21 4.96 4.27 -5.20 -0.02 4.94 16 10 N -0.59 -11.46 2.44 -176.43 -0.43 -11.89 16 11 C 0.20 2.96 5.78 -5.19 -0.03 2.93 16 12 C -0.04 -0.64 6.85 -35.62 -0.24 -0.88 16 13 C -0.16 -2.92 10.40 -39.70 -0.41 -3.33 16 14 C -0.21 -3.45 10.91 -39.71 -0.43 -3.88 16 15 C -0.05 -0.78 12.09 29.41 0.36 -0.42 16 16 O -0.18 -2.94 9.55 5.68 0.05 -2.88 16 17 C 0.51 9.83 7.67 -10.99 -0.08 9.74 16 18 O -0.54 -12.43 15.56 5.55 0.09 -12.34 16 19 C -0.14 -1.90 4.25 -27.88 -0.12 -2.02 16 20 C -0.12 -1.41 4.62 -26.73 -0.12 -1.53 16 21 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 22 N -0.72 -7.51 5.51 -61.25 -0.34 -7.85 16 23 C 0.56 6.73 7.77 -12.33 -0.10 6.64 16 24 O -0.54 -8.31 16.35 5.31 0.09 -8.22 16 25 C -0.13 -1.34 5.87 -104.97 -0.62 -1.95 16 26 C -0.09 -0.68 9.54 -39.19 -0.37 -1.05 16 27 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 28 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 29 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 30 C -0.06 -0.56 9.60 -39.18 -0.38 -0.94 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 1.07 6.48 -51.93 -0.34 0.74 16 33 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 34 H 0.11 1.40 7.89 -51.93 -0.41 0.99 16 35 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 36 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 37 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 38 H 0.19 2.09 8.06 -52.48 -0.42 1.66 16 39 H 0.10 1.35 6.93 -51.93 -0.36 0.99 16 40 H 0.09 0.97 7.40 -51.93 -0.38 0.59 16 41 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.40 3.30 6.51 -40.82 -0.27 3.04 16 46 H 0.13 0.77 6.41 -52.48 -0.34 0.43 16 47 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 48 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 49 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 50 H 0.14 1.26 7.65 -52.48 -0.40 0.86 16 LS Contribution 422.23 15.07 6.36 6.36 Total: -1.00 -37.15 422.23 -9.31 -46.46 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.01 Total: 7.18 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -4.22 Total: -6.75 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.01 Total: -46.15 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.23 Total: -23.45 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -37.15 -9.31 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069388569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.723 kcal (2) G-P(sol) polarization free energy of solvation -37.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds