Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36002 * 117.00198 * 2 1 4 4 C 1.38565 * 120.07176 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99773 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14446 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.92122 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.32725 * 270.35620 * 7 6 5 9 9 N 1.46750 * 109.32858 * 30.00253 * 7 6 5 10 10 C 1.38551 * 118.62838 * 75.33889 * 9 7 6 11 11 N 1.32011 * 121.86311 * 209.99172 * 10 9 7 12 12 C 1.32039 * 121.37788 * 179.59732 * 11 10 9 13 13 C 1.38380 * 121.48583 * 0.02562 * 12 11 10 14 14 C 1.38595 * 119.56505 * 0.10715 * 13 12 11 15 15 C 1.39336 * 117.89748 * 359.97438 * 14 13 12 16 16 C 1.47263 * 121.99389 * 179.62462 * 15 14 13 17 17 O 1.21604 * 120.45095 * 346.22870 * 16 15 14 18 18 N 1.35000 * 119.10442 * 166.22618 * 16 15 14 19 19 C 1.38240 * 120.15199 * 0.27555 * 6 5 4 20 20 C 1.38562 * 119.99547 * 359.49058 * 19 6 5 21 21 O 1.35997 * 120.07469 * 180.25125 * 20 19 6 22 22 C 1.42901 * 116.99802 * 0.23937 * 21 20 19 23 23 C 1.52992 * 109.47297 * 179.97438 * 22 21 20 24 24 C 1.50703 * 109.47504 * 179.97438 * 23 22 21 25 25 H 1.08000 * 119.99643 * 359.97438 * 24 23 22 26 26 C 1.37872 * 120.00063 * 179.97438 * 24 23 22 27 27 N 1.31514 * 119.99558 * 179.97438 * 26 24 23 28 28 Si 1.86795 * 120.00266 * 359.97438 * 26 24 23 29 29 H 1.48504 * 109.47294 * 90.00160 * 28 26 24 30 30 H 1.48504 * 109.47045 * 210.00212 * 28 26 24 31 31 H 1.48507 * 109.47121 * 330.00012 * 28 26 24 32 32 H 1.08994 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46924 * 300.00145 * 1 2 3 34 34 H 1.08998 * 109.47623 * 59.99682 * 1 2 3 35 35 H 1.07997 * 119.99934 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.92123 * 180.02562 * 5 4 3 37 37 H 0.97002 * 120.68437 * 255.37108 * 9 7 6 38 38 H 1.07992 * 119.26052 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.21641 * 180.37584 * 13 12 11 40 40 H 1.08003 * 121.04945 * 179.97438 * 14 13 12 41 41 H 0.97006 * 119.49614 * 176.34117 * 18 16 15 42 42 H 1.07998 * 119.99960 * 179.74196 * 19 6 5 43 43 H 1.08999 * 109.46558 * 299.99550 * 22 21 20 44 44 H 1.08991 * 109.47630 * 59.99128 * 22 21 20 45 45 H 1.08999 * 109.47031 * 299.99361 * 23 22 21 46 46 H 1.09001 * 109.47371 * 59.99647 * 23 22 21 47 47 H 0.97003 * 119.99828 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3030 3.6798 -0.0005 7 6 3.9837 5.0243 -0.0017 8 1 4.1406 5.3483 -1.0305 9 7 3.1334 5.9998 0.6904 10 6 3.0641 5.9568 2.0735 11 7 1.9817 6.3328 2.7290 12 6 1.9233 6.2804 4.0471 13 6 2.9930 5.8301 4.8006 14 6 4.1557 5.4254 4.1640 15 6 4.1940 5.4913 2.7727 16 6 5.3857 5.0919 2.0052 17 8 6.4531 4.9290 2.5647 18 7 5.2773 4.9090 0.6721 19 6 4.0603 2.5233 -0.0063 20 6 3.4360 1.2863 -0.0009 21 8 4.1795 0.1476 -0.0013 22 6 5.6003 0.3006 -0.0023 23 6 6.2618 -1.0790 -0.0021 24 6 7.7602 -0.9177 -0.0037 25 1 8.1969 0.0700 -0.0052 26 6 8.5733 -2.0311 -0.0033 27 7 9.8809 -1.8902 -0.0052 28 14 7.8179 -3.7395 0.0000 29 1 7.6159 -4.1941 -1.3992 30 1 8.7276 -4.6816 0.7002 31 1 6.5097 -3.7009 0.7018 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 0.2146 2.3197 0.0014 36 1 1.3342 4.5115 0.0008 37 1 2.6299 6.6607 0.1898 38 1 1.0204 6.5962 4.5484 39 1 2.9208 5.7901 5.8774 40 1 5.0052 5.0702 4.7285 41 1 6.0691 4.6982 0.1529 42 1 5.1386 2.5840 -0.0109 43 1 5.9059 0.8503 -0.8925 44 1 5.9072 0.8504 0.8873 45 1 5.9562 -1.6283 0.8884 46 1 5.9550 -1.6292 -0.8916 47 1 10.4531 -2.6736 -0.0045 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069439012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -23.363242 kcal Electronic energy + Delta-G solvation = -33372.051104 eV Core-core repulsion = 28907.217320 eV Total energy + Delta-G solvation = -4464.833783 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46586 -40.39660 -39.01684 -38.31958 -37.88695 -36.06223 -33.63560 -33.32778 -32.60389 -31.29053 -30.81316 -30.05812 -29.35105 -27.45278 -25.57460 -25.18395 -24.94025 -23.07558 -22.35263 -21.66983 -20.54314 -20.08556 -18.64656 -18.54515 -18.21079 -17.36723 -16.90284 -16.39420 -16.25868 -16.04626 -15.97369 -15.55391 -15.34007 -15.15771 -15.05549 -14.58391 -14.42096 -14.28351 -13.99360 -13.92142 -13.64431 -13.42734 -12.97066 -12.85909 -12.61545 -12.57403 -12.21998 -11.95588 -11.79708 -11.25942 -11.12608 -11.08981 -10.83168 -10.76246 -10.43719 -10.18768 -10.09002 -9.98984 -9.80568 -9.70165 -9.58083 -9.32159 -8.73096 -8.59775 -8.36921 -7.69174 -6.10822 -4.11662 0.48506 1.06116 1.16342 1.39689 2.46416 2.72285 2.96178 3.24868 3.30629 3.37766 3.44374 3.59386 3.64633 3.65585 4.08216 4.36254 4.41688 4.49987 4.54437 4.62098 4.73158 4.78576 4.88580 4.92876 5.04358 5.08373 5.19710 5.23272 5.33476 5.34703 5.39738 5.61508 5.66906 5.79732 5.84737 5.91080 6.01536 6.10085 6.17076 6.33189 6.41483 6.46851 6.52206 6.63997 6.92950 7.00678 7.09621 7.24766 7.27557 7.63320 7.64912 7.90418 8.02072 8.41227 8.89957 9.49443 11.01668 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003020 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.567405 B = 9269.543403 C =11189.362111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.302 6.302 3 C 0.100 3.900 4 C -0.177 4.177 5 C -0.098 4.098 6 C -0.136 4.136 7 C 0.436 3.564 8 H 0.125 0.875 9 N -0.726 5.726 10 C 0.430 3.570 11 N -0.530 5.530 12 C 0.162 3.838 13 C -0.226 4.226 14 C 0.019 3.981 15 C -0.238 4.238 16 C 0.579 3.421 17 O -0.525 6.525 18 N -0.733 5.733 19 C -0.153 4.153 20 C 0.118 3.882 21 O -0.307 6.307 22 C 0.072 3.928 23 C -0.007 4.007 24 C -0.526 4.526 25 H 0.075 0.925 26 C 0.073 3.927 27 N -0.897 5.897 28 Si 0.879 3.121 29 H -0.275 1.275 30 H -0.286 1.286 31 H -0.263 1.263 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.418 0.582 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.415 0.585 42 H 0.139 0.861 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.028 0.972 46 H 0.024 0.976 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.238 18.442 2.304 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.055 3.945 4 C -0.196 4.196 5 C -0.117 4.117 6 C -0.139 4.139 7 C 0.244 3.756 8 H 0.142 0.858 9 N -0.364 5.364 10 C 0.194 3.806 11 N -0.246 5.246 12 C 0.004 3.996 13 C -0.248 4.248 14 C -0.008 4.008 15 C -0.248 4.248 16 C 0.367 3.633 17 O -0.400 6.400 18 N -0.390 5.390 19 C -0.173 4.173 20 C 0.070 3.930 21 O -0.220 6.220 22 C -0.002 4.002 23 C -0.045 4.045 24 C -0.564 4.564 25 H 0.093 0.907 26 C -0.129 4.129 27 N -0.535 5.535 28 Si 0.706 3.294 29 H -0.201 1.201 30 H -0.212 1.212 31 H -0.187 1.187 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.256 0.744 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.254 0.746 42 H 0.157 0.843 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.205 18.091 2.181 28.725 hybrid contribution 0.359 -0.817 0.038 0.893 sum -21.847 17.274 2.219 27.939 Atomic orbital electron populations 1.23039 0.78988 1.03870 1.00904 1.86240 1.20630 1.25928 1.88763 1.18401 0.89421 0.85162 1.01563 1.20947 0.99655 0.91402 1.07597 1.20471 0.93182 0.97031 1.01006 1.20158 0.94045 0.94298 1.05434 1.19222 0.78049 0.85414 0.92945 0.85798 1.44394 1.51939 1.37649 1.02388 1.18314 0.87422 0.89391 0.85456 1.67246 1.24354 1.22728 1.10265 1.22703 0.97837 0.90948 0.88079 1.21958 0.94816 1.06207 1.01828 1.21500 0.97657 0.89428 0.92201 1.20415 0.95223 1.13880 0.95257 1.17837 0.87935 0.75843 0.81689 1.90870 1.29350 1.50624 1.69195 1.46313 1.11026 1.73387 1.08235 1.20909 1.00830 0.90308 1.05209 1.18338 0.88439 0.86932 0.99250 1.86246 1.20977 1.27341 1.87444 1.23101 0.74665 1.02169 1.00302 1.19565 0.95933 0.91039 0.97934 1.20833 0.87907 0.95319 1.52326 0.90715 1.24919 0.94657 0.99250 0.94120 1.69897 1.03049 1.30380 1.50203 0.86773 0.79740 0.84115 0.78752 1.20068 1.21183 1.18716 0.88308 0.92950 0.92866 0.85010 0.85604 0.74353 0.82176 0.84142 0.83556 0.74619 0.84296 0.92612 0.92605 0.95411 0.95816 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.61 10.28 -34.25 -0.35 -4.96 16 3 C 0.10 1.52 6.70 -39.12 -0.26 1.26 16 4 C -0.18 -2.08 9.04 -39.46 -0.36 -2.44 16 5 C -0.10 -1.05 9.25 -39.58 -0.37 -1.42 16 6 C -0.14 -1.56 5.44 -104.62 -0.57 -2.12 16 7 C 0.44 3.80 4.28 -128.73 -0.55 3.25 16 8 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 9 N -0.73 -5.93 4.43 -57.80 -0.26 -6.18 16 10 C 0.43 4.64 7.30 -155.16 -1.13 3.50 16 11 N -0.53 -5.38 10.40 -12.11 -0.13 -5.50 16 12 C 0.16 1.34 11.15 -17.41 -0.19 1.14 16 13 C -0.23 -1.90 10.09 -39.40 -0.40 -2.30 16 14 C 0.02 0.21 9.78 -39.04 -0.38 -0.18 16 15 C -0.24 -2.99 5.83 -104.85 -0.61 -3.60 16 16 C 0.58 8.22 7.88 -12.49 -0.10 8.12 16 17 O -0.52 -9.35 17.50 5.27 0.09 -9.26 16 18 N -0.73 -8.09 4.12 -59.11 -0.24 -8.33 16 19 C -0.15 -2.22 8.30 -39.46 -0.33 -2.55 16 20 C 0.12 2.01 6.70 -39.12 -0.26 1.75 16 21 O -0.31 -6.27 9.92 -34.23 -0.34 -6.61 16 22 C 0.07 1.51 4.68 37.15 0.17 1.69 16 23 C -0.01 -0.18 4.41 -27.89 -0.12 -0.30 16 24 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 25 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 26 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 27 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 28 Si 0.88 21.96 27.47 -169.99 -4.67 17.30 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 35 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 36 H 0.13 1.11 7.39 -52.49 -0.39 0.72 16 37 H 0.42 2.35 8.96 -40.82 -0.37 1.99 16 38 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.15 1.58 7.90 -52.48 -0.41 1.17 16 41 H 0.42 4.17 8.84 -40.82 -0.36 3.81 16 42 H 0.14 2.04 5.55 -52.49 -0.29 1.75 16 43 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 44 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 45 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 46 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -37.10 393.64 -9.87 -46.97 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.79 Total: 3.79 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -4.90 Total: -6.31 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.15 Total: -46.86 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.60 Total: -20.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.10 -9.87 -46.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069439012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.608 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds