Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47599 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47111 * 300.00207 * 3 2 1 6 6 H 1.48505 * 109.46927 * 59.99759 * 3 2 1 7 7 C 1.37887 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99795 * 94.98962 * 10 9 7 12 12 C 1.53001 * 109.47060 * 270.00288 * 11 10 9 13 13 N 1.46895 * 109.47096 * 180.02562 * 12 11 10 14 14 C 1.47019 * 111.00173 * 293.63585 * 13 12 11 15 15 C 1.53098 * 109.26150 * 177.60416 * 14 13 12 16 16 O 1.43018 * 109.25466 * 56.84788 * 15 14 13 17 17 C 1.43012 * 113.74251 * 301.33307 * 16 15 14 18 18 C 1.47014 * 111.00332 * 170.00305 * 13 12 11 19 19 C 1.34780 * 119.99973 * 274.99518 * 10 9 7 20 20 O 1.21540 * 119.99978 * 174.95398 * 19 10 9 21 21 C 1.47945 * 120.00054 * 354.95268 * 19 10 9 22 22 N 1.32206 * 120.15582 * 76.23404 * 21 19 10 23 23 C 1.32025 * 122.68052 * 179.97438 * 22 21 19 24 24 C 1.36692 * 122.02841 * 359.97438 * 23 22 21 25 25 C 1.40530 * 118.84757 * 0.02562 * 24 23 22 26 26 C 1.40319 * 122.22558 * 179.97438 * 25 24 23 27 27 C 1.36195 * 119.45730 * 179.97438 * 26 25 24 28 28 C 1.39386 * 121.00332 * 0.02562 * 27 26 25 29 29 C 1.36257 * 121.08032 * 359.97438 * 28 27 26 30 30 C 1.40094 * 119.53851 * 359.73992 * 29 28 27 31 31 H 0.96997 * 119.99948 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47152 * 60.00498 * 9 7 2 33 33 H 1.09003 * 109.47499 * 300.00563 * 9 7 2 34 34 H 1.09002 * 109.46621 * 150.00568 * 11 10 9 35 35 H 1.08995 * 109.47340 * 30.00347 * 11 10 9 36 36 H 1.08998 * 109.47210 * 60.00122 * 12 11 10 37 37 H 1.08999 * 109.47569 * 300.00167 * 12 11 10 38 38 H 1.08997 * 109.50507 * 297.54123 * 14 13 12 39 39 H 1.09001 * 109.50274 * 57.67290 * 14 13 12 40 40 H 1.09002 * 109.50744 * 296.91791 * 15 14 13 41 41 H 1.08995 * 109.54184 * 176.80503 * 15 14 13 42 42 H 1.09003 * 109.50377 * 298.73734 * 17 16 15 43 43 H 1.09000 * 109.54266 * 178.62828 * 17 16 15 44 44 H 1.09004 * 109.50090 * 302.32489 * 18 13 12 45 45 H 1.08999 * 109.50773 * 62.41091 * 18 13 12 46 46 H 1.07994 * 118.98565 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.57683 * 179.97438 * 24 23 22 48 48 H 1.08005 * 120.26901 * 359.97438 * 26 25 24 49 49 H 1.08008 * 119.50336 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.45949 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.23254 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5951 -4.2412 1.2634 12 6 3.8238 -3.5262 1.8289 13 7 4.2173 -4.1567 3.0960 14 6 3.1926 -3.9473 4.1293 15 6 3.6139 -4.6694 5.4119 16 8 4.8995 -4.1942 5.8201 17 6 5.9217 -4.3827 4.8378 18 6 5.5238 -3.6578 3.5494 19 6 2.7181 -4.0589 -1.1633 20 8 3.5758 -4.9201 -1.1573 21 6 2.2396 -3.5006 -2.4471 22 7 2.6396 -2.3036 -2.8410 23 6 2.2446 -1.7579 -3.9764 24 6 1.3891 -2.3976 -4.8292 25 6 0.9168 -3.6752 -4.4837 26 6 0.0364 -4.3951 -5.3057 27 6 -0.3856 -5.6299 -4.9158 28 6 0.0433 -6.1885 -3.7129 29 6 0.8978 -5.5173 -2.8908 30 6 1.3581 -4.2471 -3.2615 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8896 34 1 2.8335 -5.2904 1.0888 35 1 1.7730 -4.1690 1.9755 36 1 3.5854 -2.4770 2.0035 37 1 4.6460 -3.5983 1.1169 38 1 3.0898 -2.8808 4.3290 39 1 2.2396 -4.3470 3.7829 40 1 3.6647 -5.7422 5.2257 41 1 2.8858 -4.4705 6.1982 42 1 6.0395 -5.4472 4.6350 43 1 6.8628 -3.9764 5.2083 44 1 6.2723 -3.8462 2.7797 45 1 5.4584 -2.5865 3.7391 46 1 2.6093 -0.7761 -4.2399 47 1 1.0809 -1.9290 -5.7521 48 1 -0.3038 -3.9734 -6.2400 49 1 -1.0629 -6.1848 -5.5482 50 1 -0.3074 -7.1694 -3.4279 51 1 1.2217 -5.9633 -1.9621 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069492550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -8.163347 kcal Electronic energy + Delta-G solvation = -34240.595489 eV Core-core repulsion = 29912.253917 eV Total energy + Delta-G solvation = -4328.341572 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.76706 -39.53325 -38.78382 -37.03107 -36.08269 -34.80630 -32.80181 -32.55675 -31.17204 -30.98415 -30.00555 -29.20780 -27.30290 -26.17940 -24.44027 -23.96067 -23.31445 -23.13249 -22.51751 -21.60117 -20.23061 -19.15057 -17.54969 -17.31875 -16.79427 -16.60696 -16.18619 -16.08391 -15.85088 -15.50764 -15.03386 -14.94939 -14.72662 -14.55856 -14.44948 -14.03813 -13.90014 -13.66783 -13.51152 -13.26078 -13.21191 -12.75819 -12.48956 -12.25955 -12.22103 -11.92003 -11.84661 -11.67875 -11.49789 -11.33971 -11.26405 -11.10759 -10.99235 -10.83628 -10.64172 -10.40594 -10.12870 -9.89892 -9.75043 -9.63430 -9.55642 -8.91123 -8.88032 -8.53150 -8.22669 -7.87765 -7.82092 -6.13969 -4.16606 0.50451 1.14903 2.06100 2.99663 3.23282 3.30621 3.31964 3.38254 3.53793 3.85009 4.08939 4.35087 4.36650 4.69867 4.79056 4.88669 4.93008 5.00473 5.08261 5.08968 5.11087 5.20042 5.21319 5.29981 5.32315 5.33450 5.46171 5.51486 5.57873 5.61991 5.68908 5.70839 5.86758 5.90571 5.92115 5.94321 6.00901 6.03075 6.13324 6.24382 6.28321 6.44967 6.50512 6.54131 6.60666 6.81842 6.98145 7.07021 7.11631 7.14009 7.17635 7.43081 7.81652 8.07448 8.10360 8.34747 8.69143 8.90764 9.48274 10.94080 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.003384 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.793761 B = 8273.223334 C =10410.821948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.240 3.760 10 N -0.581 5.581 11 C 0.130 3.870 12 C 0.043 3.957 13 N -0.535 5.535 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.066 3.934 18 C 0.018 3.982 19 C 0.579 3.421 20 O -0.553 6.553 21 C 0.162 3.838 22 N -0.423 5.423 23 C 0.094 3.906 24 C -0.159 4.159 25 C -0.023 4.023 26 C -0.113 4.113 27 C -0.102 4.102 28 C -0.125 4.125 29 C -0.077 4.077 30 C -0.085 4.085 31 H 0.262 0.738 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.154 0.846 47 H 0.136 0.864 48 H 0.129 0.871 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -9.791 -2.008 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.121 3.879 10 N -0.310 5.310 11 C 0.006 3.994 12 C -0.086 4.086 13 N -0.261 5.261 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.365 3.635 20 O -0.432 6.432 21 C 0.009 3.991 22 N -0.132 5.132 23 C -0.052 4.052 24 C -0.179 4.179 25 C -0.028 4.028 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.143 4.143 29 C -0.097 4.097 30 C -0.088 4.088 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.171 0.829 47 H 0.154 0.846 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.143 0.857 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.185 -9.942 -1.431 10.280 hybrid contribution -0.484 1.689 -0.811 1.935 sum 1.701 -8.253 -2.242 8.720 Atomic orbital electron populations 1.69934 1.05961 1.26899 1.50758 1.24863 0.94721 0.99064 0.95089 0.86509 0.80358 0.83537 0.77511 1.19598 1.20960 1.21188 1.21379 0.93545 0.89755 1.50157 0.91801 1.19487 0.87262 0.82879 0.98307 1.48174 1.44332 1.34396 1.04135 1.21241 0.96085 0.97157 0.84891 1.22515 0.98734 0.97533 0.89771 1.62189 1.02122 1.58297 1.03481 1.22856 0.96345 0.99981 0.92418 1.22669 0.84907 0.97862 0.95743 1.87953 1.18228 1.83339 1.41266 1.22643 0.90843 0.99897 0.87731 1.22745 0.92415 0.98022 0.97840 1.17726 0.81250 0.81298 0.83267 1.90744 1.31521 1.33536 1.87357 1.21225 0.93168 0.90201 0.94551 1.67472 1.22702 1.08504 1.14538 1.22234 0.94444 0.99483 0.89017 1.21984 0.99599 0.94772 1.01507 1.18064 0.96533 0.94561 0.93672 1.20907 0.97722 0.95056 0.99439 1.20910 0.99253 0.95523 0.96468 1.20859 0.98420 1.00304 0.94764 1.20987 0.95923 0.93158 0.99630 1.18683 0.98783 0.95971 0.95323 0.92841 0.95068 0.94467 0.90183 0.90836 0.92582 0.90492 0.93545 0.89304 0.92411 0.88662 0.92384 0.88763 0.89703 0.93873 0.82873 0.84601 0.85272 0.85811 0.85722 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 13.29 55.43 0.74 -24.13 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.19 8.48 -34.44 -0.29 -13.48 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.72 4.99 -5.20 -0.03 5.69 16 10 N -0.58 -12.17 2.47 -176.14 -0.43 -12.61 16 11 C 0.13 2.33 5.35 -4.04 -0.02 2.31 16 12 C 0.04 0.76 5.28 -3.83 -0.02 0.74 16 13 N -0.54 -8.03 4.73 -234.31 -1.11 -9.14 16 14 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 15 C 0.07 0.77 7.01 37.21 0.26 1.03 16 16 O -0.39 -5.23 10.83 -35.23 -0.38 -5.61 16 17 C 0.07 0.77 7.01 37.21 0.26 1.03 16 18 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 19 C 0.58 12.53 6.00 -12.28 -0.07 12.46 16 20 O -0.55 -12.59 16.73 5.33 0.09 -12.50 16 21 C 0.16 3.41 4.75 -82.55 -0.39 3.02 16 22 N -0.42 -9.07 9.52 -9.81 -0.09 -9.16 16 23 C 0.09 1.67 11.06 -18.03 -0.20 1.47 16 24 C -0.16 -2.42 9.88 -39.28 -0.39 -2.81 16 25 C -0.02 -0.37 5.75 -106.82 -0.61 -0.99 16 26 C -0.11 -1.44 9.82 -39.53 -0.39 -1.83 16 27 C -0.10 -1.19 9.95 -39.89 -0.40 -1.59 16 28 C -0.13 -1.61 9.95 -39.87 -0.40 -2.01 16 29 C -0.08 -1.24 9.42 -39.60 -0.37 -1.61 16 30 C -0.08 -1.56 5.76 -106.59 -0.61 -2.17 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.03 0.81 6.99 -51.93 -0.36 0.45 16 33 H 0.04 0.92 7.84 -51.93 -0.41 0.51 16 34 H 0.08 1.41 7.50 -51.93 -0.39 1.03 16 35 H 0.07 1.22 6.23 -51.93 -0.32 0.89 16 36 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 37 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 48 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 49 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 50 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 51 H 0.13 2.07 7.23 -52.49 -0.38 1.69 16 LS Contribution 416.90 15.07 6.28 6.28 Total: -1.00 -31.79 416.90 -11.38 -43.17 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.64 Total: 4.37 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.81 Total: 3.25 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.90 Total: -55.04 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.29 Total: -18.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.79 -11.38 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.012 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds