Wall clock time and date at job start Tue Mar 31 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47407 * 2 1 4 4 C 1.36236 * 126.51444 * 269.96303 * 3 2 1 5 5 C 1.46842 * 125.79937 * 0.05472 * 4 3 2 6 6 O 1.21670 * 120.00426 * 352.68860 * 5 4 3 7 7 N 1.34778 * 120.00100 * 172.68695 * 5 4 3 8 8 C 1.46506 * 120.00044 * 354.86096 * 7 5 4 9 9 C 1.50695 * 109.47016 * 87.49719 * 8 7 5 10 10 H 1.08000 * 120.00204 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99732 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00253 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00099 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47000 * 59.99637 * 13 11 9 15 15 H 1.48495 * 109.47514 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47077 * 299.99982 * 13 11 9 17 17 C 1.46504 * 120.00192 * 174.86280 * 7 5 4 18 18 C 1.50699 * 109.47210 * 89.99737 * 17 7 5 19 19 C 1.38226 * 119.61605 * 95.00333 * 18 17 7 20 20 C 1.38633 * 119.16199 * 179.97438 * 19 18 17 21 21 C 1.38675 * 118.41629 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.16648 * 0.02562 * 21 20 19 23 23 N 1.31848 * 119.61814 * 274.72650 * 18 17 7 24 24 N 1.37838 * 108.39705 * 179.78080 * 4 3 2 25 25 H 0.97009 * 125.34277 * 180.30613 * 24 4 3 26 26 C 1.34109 * 109.30966 * 0.42902 * 24 4 3 27 27 C 1.50701 * 125.82947 * 179.83691 * 26 24 4 28 28 C 1.38624 * 108.34084 * 359.57214 * 26 24 4 29 29 C 1.46614 * 126.51171 * 180.26339 * 28 26 24 30 30 C 1.50708 * 120.00076 * 272.52979 * 29 28 26 31 31 O 1.21318 * 120.00127 * 92.53727 * 29 28 26 32 32 H 1.09003 * 109.47717 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47005 * 299.99544 * 1 2 3 34 34 H 1.08996 * 109.47786 * 59.99284 * 1 2 3 35 35 H 1.09002 * 109.46484 * 240.00523 * 2 1 3 36 36 H 1.08995 * 109.47293 * 120.01304 * 2 1 3 37 37 H 1.08997 * 109.47066 * 207.50076 * 8 7 5 38 38 H 1.09001 * 109.46455 * 327.49573 * 8 7 5 39 39 H 0.97000 * 119.99954 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.46794 * 209.99979 * 17 7 5 41 41 H 1.08997 * 109.46486 * 329.99639 * 17 7 5 42 42 H 1.08003 * 120.41953 * 359.95363 * 19 18 17 43 43 H 1.07995 * 120.78924 * 180.02562 * 20 19 18 44 44 H 1.07994 * 120.41852 * 180.02562 * 21 20 19 45 45 H 1.07998 * 119.61872 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.46942 * 263.31128 * 27 26 24 47 47 H 1.08993 * 109.46847 * 143.30921 * 27 26 24 48 48 H 1.09000 * 109.46798 * 23.30709 * 27 26 24 49 49 H 1.09000 * 109.46957 * 94.86272 * 30 29 28 50 50 H 1.08995 * 109.46906 * 214.86265 * 30 29 28 51 51 H 1.09000 * 109.47141 * 334.86425 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3032 2.1847 -1.0949 5 6 2.1543 1.7642 -2.4940 6 8 1.8863 0.6067 -2.7561 7 7 2.3144 2.6605 -3.4877 8 6 2.5253 4.0753 -3.1713 9 6 3.9968 4.3313 -2.9710 10 1 4.7042 3.5211 -3.0692 11 6 4.4400 5.5997 -2.6614 12 7 3.5786 6.5862 -2.5413 13 14 6.2640 5.9173 -2.4138 14 1 6.9995 5.5738 -3.6574 15 1 6.4778 7.3513 -2.0929 16 1 6.7650 5.0791 -1.2950 17 6 2.2776 2.2199 -4.8845 18 6 0.8611 2.2851 -5.3946 19 6 0.4326 3.4067 -6.0795 20 6 -0.8723 3.4564 -6.5451 21 6 -1.7009 2.3710 -6.3036 22 6 -1.2023 1.2839 -5.6115 23 7 0.0464 1.2694 -5.1872 24 7 2.7350 3.4216 -0.6663 25 1 2.9902 4.1581 -1.2439 26 6 2.7495 3.4461 0.6745 27 6 3.1632 4.6150 1.5310 28 6 2.3132 2.2147 1.1380 29 6 2.1699 1.8113 2.5402 30 6 3.3437 1.2206 3.2782 31 8 1.1063 1.9529 3.1065 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8898 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5140 0.8898 37 1 2.1581 4.6901 -3.9930 38 1 1.9851 4.3279 -2.2589 39 1 3.8904 7.4784 -2.3231 40 1 2.9112 2.8704 -5.4874 41 1 2.6412 1.1946 -4.9516 42 1 1.1057 4.2340 -6.2495 43 1 -1.2345 4.3195 -7.0837 44 1 -2.7231 2.3752 -6.6521 45 1 -1.8413 0.4348 -5.4191 46 1 4.2039 4.4946 1.8317 47 1 2.5312 4.6571 2.4180 48 1 3.0538 5.5386 0.9626 49 1 3.8616 2.0076 3.8263 50 1 2.9893 0.4634 3.9775 51 1 4.0290 0.7636 2.5643 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069515983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:48 Heat of formation + Delta-G solvation = 9.569785 kcal Electronic energy + Delta-G solvation = -34889.145336 eV Core-core repulsion = 30561.572731 eV Total energy + Delta-G solvation = -4327.572605 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20274 -39.99542 -38.74739 -38.01689 -35.63643 -33.53845 -33.29780 -32.25778 -31.82274 -31.05882 -30.11043 -28.98760 -27.82591 -27.10191 -25.57482 -23.63201 -23.30312 -22.88349 -22.36078 -21.59083 -19.83471 -18.60163 -18.12982 -17.12783 -16.84202 -16.32969 -15.99984 -15.64674 -15.40892 -15.33011 -15.03625 -14.82512 -14.48864 -14.33627 -14.07447 -13.73650 -13.68052 -13.44731 -13.26715 -13.09735 -12.74717 -12.74072 -12.59087 -12.36513 -12.23663 -12.07404 -12.00102 -11.79655 -11.62854 -11.57144 -11.52186 -11.29923 -11.20292 -10.86038 -10.72691 -10.52191 -10.41113 -10.16000 -9.68128 -9.49605 -9.16724 -9.14472 -8.98950 -8.76475 -8.17169 -7.96225 -7.42931 -6.59641 -4.74445 1.26528 1.49520 2.22447 2.23512 2.87450 3.01131 3.07922 3.10834 3.64078 3.94115 3.97474 4.13043 4.24608 4.58449 4.62673 4.70534 4.94536 5.00186 5.20469 5.22058 5.30359 5.33866 5.41885 5.50937 5.55251 5.63255 5.66254 5.74624 5.79155 5.81346 5.86840 5.95321 5.96898 6.07770 6.11444 6.14178 6.26696 6.28729 6.32632 6.34733 6.36485 6.40141 6.48424 6.74284 6.77556 6.88844 6.92377 7.20759 7.28556 7.37686 7.54147 7.57658 7.83316 8.11146 8.29018 8.30633 8.44054 8.91559 9.00601 10.42168 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.006954 B = 0.004623 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.616432 B = 6055.698378 C = 9076.246793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.055 4.055 4 C -0.038 4.038 5 C 0.588 3.412 6 O -0.532 6.532 7 N -0.596 5.596 8 C 0.219 3.781 9 C -0.562 4.562 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.880 5.880 13 Si 0.898 3.102 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.270 1.270 17 C 0.172 3.828 18 C 0.118 3.882 19 C -0.158 4.158 20 C -0.081 4.081 21 C -0.181 4.181 22 C 0.093 3.907 23 N -0.454 5.454 24 N -0.496 5.496 25 H 0.452 0.548 26 C 0.080 3.920 27 C -0.094 4.094 28 C -0.276 4.276 29 C 0.445 3.555 30 C -0.197 4.197 31 O -0.465 6.465 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.274 0.726 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.151 0.849 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -4.135 0.147 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.062 4.062 4 C -0.152 4.152 5 C 0.378 3.622 6 O -0.409 6.409 7 N -0.327 5.327 8 C 0.099 3.901 9 C -0.600 4.600 10 H 0.090 0.910 11 C -0.139 4.139 12 N -0.516 5.516 13 Si 0.724 3.276 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.195 1.195 17 C 0.048 3.952 18 C -0.021 4.021 19 C -0.179 4.179 20 C -0.107 4.107 21 C -0.201 4.201 22 C -0.064 4.064 23 N -0.163 5.163 24 N -0.105 5.105 25 H 0.312 0.688 26 C -0.046 4.046 27 C -0.151 4.151 28 C -0.284 4.284 29 C 0.321 3.679 30 C -0.255 4.255 31 O -0.339 6.339 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.168 0.832 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.111 0.889 50 H 0.100 0.900 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.205 -5.007 0.570 5.972 hybrid contribution 0.775 1.752 -0.723 2.047 sum -2.430 -3.256 -0.152 4.065 Atomic orbital electron populations 1.21606 0.95349 1.00697 1.01698 1.20064 0.95679 0.91352 1.02563 1.19298 1.01834 0.95784 0.89304 1.19699 1.14513 0.87471 0.93563 1.17114 0.76782 0.85099 0.83217 1.90741 1.49107 1.17804 1.83256 1.47960 1.70645 1.09973 1.04131 1.19765 0.96551 0.76012 0.97816 1.21640 0.92541 0.95405 1.50440 0.90972 1.25097 0.98992 0.95506 0.94352 1.69925 1.34699 1.01575 1.45390 0.86501 0.83891 0.77657 0.79547 1.19496 1.20662 1.19502 1.20130 0.89720 1.02508 0.82865 1.21872 0.97296 0.89465 0.93457 1.22101 0.96985 0.99325 0.99445 1.21535 0.93596 0.98078 0.97511 1.22102 1.00886 0.95457 1.01693 1.22784 0.92216 0.97451 0.93985 1.67654 1.03807 1.28107 1.16692 1.43964 1.45731 1.14317 1.06488 0.68791 1.20621 1.03283 0.95862 0.84807 1.20430 1.01740 0.94623 0.98304 1.19636 1.18509 0.96115 0.94131 1.21669 0.87916 0.72254 0.86093 1.22259 0.98909 1.02561 1.01738 1.90503 1.30075 1.44061 1.69217 0.93173 0.93238 0.92699 0.88981 0.92570 0.93582 0.94606 0.91565 0.88685 0.88872 0.84617 0.85166 0.85316 0.83212 0.90472 0.90567 0.90563 0.88925 0.90021 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 37.16 0.37 -1.95 16 2 C -0.06 -1.04 5.77 -27.89 -0.16 -1.20 16 3 C -0.05 -1.07 5.47 -104.08 -0.57 -1.64 16 4 C -0.04 -0.82 6.57 -82.41 -0.54 -1.36 16 5 C 0.59 12.87 7.61 -12.78 -0.10 12.78 16 6 O -0.53 -12.03 14.30 5.22 0.07 -11.96 16 7 N -0.60 -12.33 2.44 -177.92 -0.43 -12.77 16 8 C 0.22 4.83 4.67 -5.19 -0.02 4.80 16 9 C -0.56 -12.89 7.34 -34.44 -0.25 -13.15 16 10 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.07 1.53 5.07 -17.82 -0.09 1.44 16 12 N -0.88 -20.98 13.29 55.43 0.74 -20.25 16 13 Si 0.90 18.30 29.54 -169.99 -5.02 13.27 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 C 0.17 3.12 5.66 -5.19 -0.03 3.09 16 18 C 0.12 2.05 6.36 -82.59 -0.53 1.53 16 19 C -0.16 -2.37 9.72 -39.44 -0.38 -2.76 16 20 C -0.08 -1.04 10.18 -39.27 -0.40 -1.44 16 21 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 22 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 23 N -0.45 -8.12 10.27 -9.47 -0.10 -8.22 16 24 N -0.50 -10.36 4.72 -5.55 -0.03 -10.39 16 25 H 0.45 9.90 3.18 -40.82 -0.13 9.77 16 26 C 0.08 1.49 7.22 -81.45 -0.59 0.90 16 27 C -0.09 -1.41 10.19 36.01 0.37 -1.05 16 28 C -0.28 -5.08 5.77 -105.11 -0.61 -5.69 16 29 C 0.44 7.24 6.55 -30.93 -0.20 7.04 16 30 C -0.20 -2.32 10.26 36.01 0.37 -1.95 16 31 O -0.46 -8.77 17.86 5.52 0.10 -8.67 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.74 6.28 -51.93 -0.33 1.41 16 36 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.04 0.85 5.20 -51.93 -0.27 0.58 16 39 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 40 H 0.09 1.56 7.97 -51.93 -0.41 1.15 16 41 H 0.09 1.73 7.50 -51.93 -0.39 1.34 16 42 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 48 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 427.09 15.07 6.44 6.44 Total: -1.00 -28.80 427.09 -9.60 -38.39 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -7.40 Total: 16.23 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.96 Total: -2.09 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.18 Total: -51.62 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -28.80 -9.60 -38.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069515983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.964 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds