Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00016 * 2 1 4 4 H 1.48505 * 109.46913 * 269.99931 * 3 2 1 5 5 H 1.48500 * 109.47306 * 29.99816 * 3 2 1 6 6 H 1.48497 * 109.47141 * 150.00140 * 3 2 1 7 7 C 1.37878 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00105 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00026 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00132 * 270.00175 * 10 9 7 12 12 C 1.50696 * 109.47205 * 270.00079 * 11 10 9 13 13 C 1.38233 * 119.61473 * 94.72932 * 12 11 10 14 14 C 1.38634 * 119.15833 * 179.70983 * 13 12 11 15 15 C 1.38671 * 118.41837 * 0.55339 * 14 13 12 16 16 C 1.38178 * 119.16625 * 359.72795 * 15 14 13 17 17 N 1.31853 * 119.62179 * 275.00558 * 12 11 10 18 18 C 1.34778 * 119.99849 * 90.00853 * 10 9 7 19 19 O 1.21276 * 119.99995 * 180.02562 * 18 10 9 20 20 C 1.50702 * 119.99935 * 359.97438 * 18 10 9 21 21 H 1.08997 * 115.56385 * 325.69667 * 20 18 10 22 22 C 1.52999 * 117.49501 * 111.37863 * 20 18 10 23 23 C 1.52995 * 117.49854 * 180.02562 * 20 18 10 24 24 H 1.09000 * 117.51870 * 145.03181 * 23 20 18 25 25 C 1.50706 * 117.50027 * 0.02562 * 23 20 18 26 26 C 1.38239 * 120.00154 * 299.98218 * 25 23 20 27 27 C 1.38224 * 120.01009 * 179.97438 * 26 25 23 28 28 C 1.38261 * 120.02581 * 0.04283 * 27 26 25 29 29 C 1.38190 * 120.01484 * 359.97438 * 28 27 26 30 30 C 1.38324 * 120.00863 * 119.70841 * 25 23 20 31 31 Cl 1.73599 * 120.01390 * 359.97438 * 30 25 23 32 32 H 0.96999 * 119.99781 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.46684 * 60.00556 * 9 7 2 34 34 H 1.08995 * 109.47209 * 300.00145 * 9 7 2 35 35 H 1.08995 * 109.46849 * 30.00080 * 11 10 9 36 36 H 1.09001 * 109.46817 * 150.00361 * 11 10 9 37 37 H 1.08001 * 120.41997 * 359.97438 * 13 12 11 38 38 H 1.07993 * 120.78752 * 180.25703 * 14 13 12 39 39 H 1.08005 * 120.41670 * 179.75172 * 15 14 13 40 40 H 1.08005 * 119.62141 * 179.97438 * 16 15 14 41 41 H 1.08998 * 117.50414 * 0.02562 * 22 20 18 42 42 H 1.09000 * 117.50147 * 214.97833 * 22 20 18 43 43 H 1.07999 * 119.99649 * 0.02562 * 26 25 23 44 44 H 1.07994 * 119.98498 * 180.02562 * 27 26 25 45 45 H 1.08001 * 119.99259 * 179.97438 * 28 27 26 46 46 H 1.08003 * 120.01169 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0013 11 6 4.2444 -3.2646 1.2707 12 6 5.6678 -3.0274 1.7050 13 6 5.9520 -1.9962 2.5807 14 6 7.2639 -1.7903 2.9787 15 6 8.2468 -2.6256 2.4697 16 6 7.8879 -3.6319 1.5934 17 7 6.6285 -3.8022 1.2410 18 6 4.2241 -3.2119 -1.1653 19 8 4.6279 -4.3555 -1.1642 20 6 3.9721 -2.5030 -2.4711 21 1 3.1365 -1.8031 -2.4727 22 6 5.1882 -2.1532 -3.3311 23 6 4.2452 -3.2796 -3.7607 24 1 3.5898 -3.0905 -4.6109 25 6 4.7451 -4.6951 -3.6280 26 6 5.9351 -4.9493 -2.9720 27 6 6.3935 -6.2476 -2.8497 28 6 5.6627 -7.2925 -3.3841 29 6 4.4731 -7.0396 -4.0403 30 6 4.0105 -5.7407 -4.1575 31 17 2.5122 -5.4230 -4.9746 32 1 -0.4850 0.8401 -0.0004 33 1 3.8752 -0.6797 0.8895 34 1 3.8745 -0.6808 -0.8905 35 1 3.5639 -2.8796 2.0301 36 1 4.0774 -4.3339 1.1415 37 1 5.1614 -1.3618 2.9535 38 1 7.5150 -0.9952 3.6650 39 1 9.2799 -2.4916 2.7549 40 1 8.6475 -4.2865 1.1922 41 1 6.1704 -2.4362 -2.9528 42 1 5.1526 -1.2233 -3.8986 43 1 6.5063 -4.1335 -2.5543 44 1 7.3230 -6.4457 -2.3368 45 1 6.0215 -8.3067 -3.2886 46 1 3.9025 -7.8559 -4.4581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 63.020988 kcal Electronic energy + Delta-G solvation = -31500.954886 eV Core-core repulsion = 27382.857507 eV Total energy + Delta-G solvation = -4118.097379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.34486 -39.85751 -38.44467 -36.25297 -36.05173 -35.03148 -32.81795 -32.28768 -31.57495 -30.37662 -30.31013 -28.25459 -26.66263 -23.90906 -23.56359 -23.39891 -22.40262 -22.21759 -21.51385 -20.26049 -18.29583 -17.24706 -17.13296 -16.64451 -16.32542 -16.07585 -15.54130 -15.34167 -15.20779 -14.78575 -14.44258 -14.27880 -13.89999 -13.57452 -13.52658 -13.26490 -13.22312 -13.12113 -12.74203 -12.65765 -12.28992 -11.96953 -11.83991 -11.65526 -11.48742 -11.35465 -11.18518 -11.00915 -10.91466 -10.75059 -10.44118 -10.37760 -10.33335 -10.11731 -9.77207 -9.67471 -9.26761 -9.23195 -8.88461 -8.75538 -8.31690 -7.93303 -7.75902 -6.24151 -4.26185 1.18245 1.40280 1.50376 1.65444 2.46777 3.13189 3.15307 3.21288 3.23291 3.62113 3.94950 4.14230 4.22903 4.31195 4.50011 4.77244 4.87684 4.92629 5.01087 5.06203 5.12686 5.14795 5.22509 5.23821 5.26210 5.32868 5.60452 5.65149 5.66367 5.68489 5.78265 5.88125 5.93860 6.02144 6.17246 6.17981 6.24558 6.25409 6.30767 6.37529 6.43604 6.54231 6.62944 6.71592 6.80695 6.84434 7.15005 7.29481 7.41115 8.09801 8.21400 8.38781 8.82332 8.97535 9.35035 10.88400 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.004572 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.690222 B = 6122.872167 C = 9173.552709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.583 5.583 11 C 0.169 3.831 12 C 0.121 3.879 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.092 3.908 17 N -0.455 5.455 18 C 0.545 3.455 19 O -0.529 6.529 20 C -0.160 4.160 21 H 0.142 0.858 22 C -0.153 4.153 23 C -0.096 4.096 24 H 0.122 0.878 25 C -0.025 4.025 26 C -0.031 4.031 27 C -0.121 4.121 28 C -0.113 4.113 29 C -0.126 4.126 30 C -0.026 4.026 31 Cl -0.080 7.080 32 H 0.266 0.734 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.314 -6.223 -2.293 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.313 5.313 11 C 0.045 3.955 12 C -0.018 4.018 13 C -0.179 4.179 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.065 4.065 17 N -0.164 5.164 18 C 0.333 3.667 19 O -0.407 6.407 20 C -0.180 4.180 21 H 0.160 0.840 22 C -0.191 4.191 23 C -0.115 4.115 24 H 0.139 0.861 25 C -0.026 4.026 26 C -0.049 4.049 27 C -0.140 4.140 28 C -0.132 4.132 29 C -0.145 4.145 30 C -0.053 4.053 31 Cl -0.051 7.051 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.969 -7.329 -2.930 16.922 hybrid contribution 0.254 1.977 0.828 2.159 sum 15.223 -5.351 -2.102 16.273 Atomic orbital electron populations 1.69892 1.06208 1.27166 1.49334 1.24864 0.94670 0.98755 0.94292 0.86974 0.80403 0.84161 0.78973 1.19839 1.20898 1.18955 1.21397 0.89003 0.95063 1.52474 0.90216 1.19805 0.95795 0.78036 0.97464 1.47762 1.64047 1.15731 1.03762 1.20122 0.88674 0.99747 0.86989 1.21926 0.96628 0.90977 0.92252 1.22128 0.97616 0.98933 0.99272 1.21541 0.92890 0.98219 0.98039 1.22091 1.00276 0.97698 1.00131 1.22765 0.93452 0.95880 0.94439 1.67660 1.00254 1.26582 1.21943 1.19478 0.76852 0.85951 0.84403 1.90699 1.46098 1.17301 1.86603 1.22448 1.02417 1.03452 0.89715 0.84003 1.23086 0.94495 0.99277 1.02205 1.21086 1.02757 0.89250 0.98391 0.86054 1.18692 0.94205 0.92326 0.97409 1.20643 0.94020 0.96825 0.93438 1.20972 1.00222 0.92684 1.00100 1.20900 0.94739 0.98921 0.98612 1.20788 0.97332 0.94515 1.01844 1.20592 0.88925 0.94411 1.01363 1.98340 1.32973 1.95992 1.77833 0.92352 0.95165 0.95136 0.88634 0.88835 0.84613 0.85190 0.85359 0.83318 0.88417 0.87608 0.86269 0.86405 0.86142 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 19.27 27.47 -169.99 -4.67 14.60 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 7 C -0.54 -13.79 9.63 -34.44 -0.33 -14.12 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 9 C 0.21 4.48 3.87 -5.19 -0.02 4.46 16 10 N -0.58 -11.56 2.44 -176.43 -0.43 -11.99 16 11 C 0.17 3.03 5.71 -5.19 -0.03 3.01 16 12 C 0.12 1.97 6.36 -82.59 -0.53 1.45 16 13 C -0.16 -2.24 9.72 -39.44 -0.38 -2.63 16 14 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 15 C -0.18 -2.01 10.11 -39.44 -0.40 -2.41 16 16 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 17 N -0.46 -7.41 10.27 -9.47 -0.10 -7.50 16 18 C 0.55 10.77 7.31 -10.98 -0.08 10.69 16 19 O -0.53 -10.84 11.28 5.56 0.06 -10.78 16 20 C -0.16 -2.86 4.80 -91.77 -0.44 -3.30 16 21 H 0.14 2.77 7.00 -51.93 -0.36 2.40 16 22 C -0.15 -2.21 9.58 -26.71 -0.26 -2.47 16 23 C -0.10 -1.53 5.55 -91.75 -0.51 -2.04 16 24 H 0.12 1.83 7.17 -51.93 -0.37 1.45 16 25 C -0.03 -0.42 4.37 -104.59 -0.46 -0.87 16 26 C -0.03 -0.49 6.17 -39.59 -0.24 -0.73 16 27 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 28 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 29 C -0.13 -1.79 9.83 -39.55 -0.39 -2.18 16 30 C -0.03 -0.42 6.31 -39.50 -0.25 -0.67 16 31 Cl -0.08 -1.22 27.42 -51.86 -1.42 -2.64 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 34 H 0.03 0.64 6.07 -51.93 -0.32 0.33 16 35 H 0.10 1.63 7.97 -51.93 -0.41 1.22 16 36 H 0.09 1.78 7.42 -51.93 -0.39 1.39 16 37 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.10 1.37 6.18 -51.93 -0.32 1.05 16 42 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.12 1.88 5.78 -52.49 -0.30 1.58 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -30.42 395.50 -11.44 -41.86 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.82 Total: 9.31 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -5.80 Total: -14.24 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.25 Total: -44.07 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.06 Total: -10.78 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.42 Total: -2.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.42 -11.44 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.883 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds