Wall clock time and date at job start Tue Mar 31 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99843 * 3 2 1 5 5 H 1.48494 * 109.47229 * 29.99716 * 3 2 1 6 6 H 1.48499 * 109.46930 * 149.99802 * 3 2 1 7 7 C 1.37873 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99849 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00459 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00151 * 90.00309 * 10 9 7 12 12 C 1.50700 * 109.46853 * 270.00123 * 11 10 9 13 13 C 1.38224 * 119.62022 * 94.99788 * 12 11 10 14 14 C 1.38630 * 119.16347 * 179.97438 * 13 12 11 15 15 C 1.38675 * 118.41860 * 0.25530 * 14 13 12 16 16 C 1.38180 * 119.16315 * 359.51902 * 15 14 13 17 17 N 1.31856 * 119.61823 * 275.02223 * 12 11 10 18 18 C 1.34773 * 119.99959 * 269.99959 * 10 9 7 19 19 O 1.21281 * 119.99971 * 179.97438 * 18 10 9 20 20 C 1.50698 * 120.00032 * 0.02562 * 18 10 9 21 21 H 1.09001 * 115.55237 * 325.58000 * 20 18 10 22 22 C 1.53002 * 117.49939 * 111.25274 * 20 18 10 23 23 C 1.53004 * 117.49834 * 179.91279 * 20 18 10 24 24 H 1.09002 * 117.49906 * 359.97438 * 23 20 18 25 25 C 1.50700 * 117.50119 * 144.99922 * 23 20 18 26 26 C 1.38238 * 120.00428 * 59.71968 * 25 23 20 27 27 C 1.38223 * 120.00876 * 179.77334 * 26 25 23 28 28 C 1.38265 * 120.02801 * 0.50714 * 27 26 25 29 29 C 1.38186 * 120.01364 * 359.74596 * 28 27 26 30 30 C 1.38325 * 120.00798 * 240.00211 * 25 23 20 31 31 Cl 1.73605 * 120.01274 * 359.94657 * 30 25 23 32 32 H 0.97006 * 119.99744 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47391 * 60.00473 * 9 7 2 34 34 H 1.09005 * 109.47277 * 300.00568 * 9 7 2 35 35 H 1.08997 * 109.47036 * 149.99873 * 11 10 9 36 36 H 1.08999 * 109.46571 * 29.99891 * 11 10 9 37 37 H 1.07998 * 120.41893 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.78834 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.41613 * 179.75147 * 15 14 13 40 40 H 1.07999 * 119.62145 * 180.20788 * 16 15 14 41 41 H 1.08998 * 117.50239 * 214.98060 * 22 20 18 42 42 H 1.09001 * 117.49983 * 359.97438 * 22 20 18 43 43 H 1.07994 * 119.99483 * 0.02562 * 26 25 23 44 44 H 1.08005 * 119.98333 * 180.23436 * 27 26 25 45 45 H 1.07995 * 119.99226 * 179.77153 * 28 27 26 46 46 H 1.08003 * 120.01092 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.2446 -3.2656 -1.2678 12 6 2.9889 -3.9759 -1.7035 13 6 2.1238 -3.3552 -2.5850 14 6 0.9717 -4.0175 -2.9799 15 6 0.7291 -5.2828 -2.4669 16 6 1.6422 -5.8417 -1.5933 17 7 2.7279 -5.1820 -1.2391 18 6 4.2240 -3.2108 1.1681 19 8 4.6278 -4.3544 1.1680 20 6 3.9718 -2.5009 2.4733 21 1 4.1829 -1.4315 2.4753 22 6 2.8032 -2.9919 3.3302 23 6 4.2434 -3.2770 3.7636 24 1 4.6041 -4.3011 3.6685 25 6 4.7823 -2.5044 4.9400 26 6 4.0557 -1.4538 5.4684 27 6 4.5476 -0.7482 6.5503 28 6 5.7715 -1.0858 7.0980 29 6 6.5011 -2.1325 6.5673 30 6 6.0067 -2.8426 5.4874 31 17 6.9225 -4.1581 4.8205 32 1 -0.4850 0.8401 -0.0004 33 1 3.8745 -0.6801 0.8912 34 1 3.8752 -0.6803 -0.8888 35 1 5.0464 -3.9922 -1.1373 36 1 4.5329 -2.5387 -2.0271 37 1 2.3425 -2.3668 -2.9612 38 1 0.2773 -3.5570 -3.6671 39 1 -0.1605 -5.8261 -2.7497 40 1 1.4623 -6.8281 -1.1920 41 1 2.2457 -2.2456 3.8962 42 1 2.2166 -3.8281 2.9498 43 1 3.1016 -1.1870 5.0385 44 1 3.9778 0.0702 6.9653 45 1 6.1570 -0.5317 7.9410 46 1 7.4569 -2.3965 6.9954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:40 Heat of formation + Delta-G solvation = 54.108037 kcal Electronic energy + Delta-G solvation = -30895.436270 eV Core-core repulsion = 26776.952396 eV Total energy + Delta-G solvation = -4118.483874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11379 -39.64765 -38.76615 -36.38626 -36.17137 -35.04949 -32.69925 -31.92276 -31.34824 -30.75633 -30.56618 -28.20175 -26.57289 -24.07027 -23.50163 -23.00908 -22.46230 -22.30425 -21.37155 -20.27451 -18.19631 -17.52344 -17.08311 -16.58530 -16.29194 -15.75071 -15.63803 -15.21212 -15.18683 -15.09969 -14.46476 -14.11587 -13.83978 -13.73487 -13.66913 -13.44143 -12.98618 -12.83840 -12.64723 -12.47949 -12.22405 -11.94868 -11.72078 -11.69886 -11.59819 -11.48209 -11.30213 -11.18398 -10.97188 -10.69206 -10.56942 -10.46336 -10.27466 -10.03489 -9.64255 -9.34228 -9.11809 -8.91788 -8.87202 -8.73882 -8.52812 -8.41571 -7.76556 -6.21429 -4.21375 1.10145 1.19444 1.58910 1.84257 2.21487 3.13536 3.20276 3.21845 3.24277 3.49727 3.78673 4.24420 4.35536 4.43236 4.65535 4.74932 4.80734 4.91839 5.07576 5.11442 5.17091 5.23470 5.28056 5.29497 5.36323 5.44571 5.52911 5.58128 5.62107 5.67400 5.84628 5.90502 5.99235 6.07718 6.16928 6.19563 6.22480 6.26038 6.35781 6.37781 6.44269 6.58318 6.62664 6.67614 6.69839 6.74748 7.19978 7.30993 7.43253 8.11875 8.40476 8.57199 8.85911 8.98188 9.38255 10.90984 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.003539 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.268192 B = 7909.620826 C =10017.815591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.207 3.793 10 N -0.585 5.585 11 C 0.172 3.828 12 C 0.121 3.879 13 C -0.128 4.128 14 C -0.079 4.079 15 C -0.178 4.178 16 C 0.086 3.914 17 N -0.461 5.461 18 C 0.549 3.451 19 O -0.543 6.543 20 C -0.148 4.148 21 H 0.123 0.877 22 C -0.125 4.125 23 C -0.109 4.109 24 H 0.130 0.870 25 C -0.032 4.032 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.118 4.118 29 C -0.112 4.112 30 C -0.031 4.031 31 Cl -0.064 7.064 32 H 0.264 0.736 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -2.861 6.150 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.096 0.904 9 C 0.085 3.915 10 N -0.315 5.315 11 C 0.048 3.952 12 C -0.018 4.018 13 C -0.148 4.148 14 C -0.105 4.105 15 C -0.199 4.199 16 C -0.072 4.072 17 N -0.170 5.170 18 C 0.337 3.663 19 O -0.421 6.421 20 C -0.169 4.169 21 H 0.141 0.859 22 C -0.163 4.163 23 C -0.127 4.127 24 H 0.148 0.852 25 C -0.033 4.033 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.137 4.137 29 C -0.131 4.131 30 C -0.057 4.057 31 Cl -0.035 7.035 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.405 -3.822 6.656 11.383 hybrid contribution -0.609 1.567 -0.723 1.830 sum 7.797 -2.255 5.933 10.053 Atomic orbital electron populations 1.69893 1.06114 1.26890 1.49926 1.24828 0.94624 0.98505 0.94583 0.87037 0.80520 0.84458 0.78849 1.20056 1.21023 1.18926 1.21311 0.88781 0.94826 1.51545 0.90368 1.19898 0.96240 0.77856 0.97459 1.47747 1.64616 1.15328 1.03852 1.20106 0.93299 0.95553 0.86220 1.21541 0.97131 0.90606 0.92558 1.21918 0.94717 1.00123 0.98059 1.21474 0.96435 0.94217 0.98358 1.22022 1.00736 0.96954 1.00145 1.22607 0.90282 0.99393 0.94869 1.67534 1.19518 1.08308 1.21663 1.19361 0.76882 0.85655 0.84386 1.90652 1.46754 1.17425 1.87307 1.22215 1.05391 0.99970 0.89316 0.85911 1.22964 0.89646 1.03186 1.00463 1.21195 0.99833 1.00251 0.91456 0.85232 1.19096 0.92616 0.95758 0.95846 1.21191 1.00451 0.94681 0.96301 1.21235 0.96039 0.99653 0.96148 1.21064 0.95049 0.97208 1.00344 1.21008 1.00561 0.96023 0.95482 1.20794 0.93720 0.93713 0.97494 1.98379 1.73173 1.46805 1.85126 0.92562 0.94660 0.95459 0.89153 0.89564 0.84879 0.85431 0.85679 0.83682 0.87699 0.87937 0.84516 0.85421 0.85391 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 13.96 55.43 0.77 -24.05 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.86 19.06 27.47 -169.99 -4.67 14.39 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 7 C -0.53 -13.08 9.79 -34.45 -0.34 -13.41 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.21 4.38 4.10 -5.20 -0.02 4.36 16 10 N -0.58 -11.88 2.44 -176.43 -0.43 -12.31 16 11 C 0.17 3.17 5.76 -5.19 -0.03 3.14 16 12 C 0.12 2.32 6.36 -82.59 -0.53 1.80 16 13 C -0.13 -2.30 9.57 -39.44 -0.38 -2.68 16 14 C -0.08 -1.29 10.18 -39.27 -0.40 -1.69 16 15 C -0.18 -2.76 10.11 -39.44 -0.40 -3.15 16 16 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 17 N -0.46 -9.16 10.27 -9.47 -0.10 -9.26 16 18 C 0.55 11.42 7.45 -10.99 -0.08 11.34 16 19 O -0.54 -12.33 15.84 5.56 0.09 -12.24 16 20 C -0.15 -2.72 4.91 -91.77 -0.45 -3.17 16 21 H 0.12 2.22 6.44 -51.93 -0.33 1.89 16 22 C -0.13 -2.13 9.57 -26.69 -0.26 -2.38 16 23 C -0.11 -1.78 5.07 -91.73 -0.46 -2.24 16 24 H 0.13 2.29 6.69 -51.93 -0.35 1.95 16 25 C -0.03 -0.47 5.61 -104.59 -0.59 -1.05 16 26 C -0.11 -1.39 9.29 -39.59 -0.37 -1.76 16 27 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 29 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 30 C -0.03 -0.42 6.31 -39.50 -0.25 -0.66 16 31 Cl -0.06 -0.89 27.42 -51.86 -1.42 -2.31 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.74 5.06 -51.93 -0.26 0.48 16 34 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 35 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 36 H 0.09 1.34 7.79 -51.93 -0.40 0.93 16 37 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.10 1.60 6.19 -51.93 -0.32 1.28 16 42 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 43 H 0.14 1.69 6.03 -52.49 -0.32 1.38 16 44 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -31.08 402.67 -11.44 -42.52 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.72 Total: 10.45 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -6.03 Total: -13.26 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.25 Total: -45.62 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.42 Total: -2.31 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.08 -11.44 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.628 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds