Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00591 * 2 1 4 4 H 1.48494 * 109.47610 * 240.00705 * 3 2 1 5 5 H 1.48505 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47200 * 120.00286 * 3 2 1 7 7 C 1.37880 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00479 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00048 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99985 * 270.00412 * 10 9 7 12 12 C 1.50704 * 109.46608 * 269.99972 * 11 10 9 13 13 C 1.38229 * 119.61647 * 95.00519 * 12 11 10 14 14 C 1.38628 * 119.15503 * 179.97438 * 13 12 11 15 15 C 1.38666 * 118.42608 * 359.97438 * 14 13 12 16 16 C 1.38183 * 119.16022 * 0.02562 * 15 14 13 17 17 N 1.31853 * 119.61637 * 274.72270 * 12 11 10 18 18 C 1.34775 * 119.99691 * 90.00097 * 10 9 7 19 19 O 1.21286 * 119.99711 * 180.02562 * 18 10 9 20 20 C 1.50697 * 120.00215 * 0.02562 * 18 10 9 21 21 H 1.09002 * 115.54932 * 34.41541 * 20 18 10 22 22 C 1.53000 * 117.50034 * 248.74477 * 20 18 10 23 23 C 1.53002 * 117.49992 * 180.08704 * 20 18 10 24 24 H 1.08999 * 117.49664 * 0.02562 * 23 20 18 25 25 C 1.50695 * 117.50044 * 215.00770 * 23 20 18 26 26 C 1.38247 * 120.00134 * 299.71960 * 25 23 20 27 27 C 1.38220 * 120.01125 * 179.77431 * 26 25 23 28 28 C 1.38267 * 120.02621 * 0.49814 * 27 26 25 29 29 C 1.38191 * 120.01221 * 359.75675 * 28 27 26 30 30 C 1.38326 * 120.01309 * 119.99510 * 25 23 20 31 31 Cl 1.73605 * 120.01149 * 359.95754 * 30 25 23 32 32 H 0.97004 * 119.99949 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.46471 * 60.00489 * 9 7 2 34 34 H 1.08995 * 109.47100 * 300.00452 * 9 7 2 35 35 H 1.09000 * 109.47361 * 29.99772 * 11 10 9 36 36 H 1.08998 * 109.47138 * 150.00208 * 11 10 9 37 37 H 1.07999 * 120.41955 * 359.97438 * 13 12 11 38 38 H 1.08008 * 120.78389 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.41952 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.61307 * 180.02562 * 16 15 14 41 41 H 1.09008 * 117.49673 * 359.97438 * 22 20 18 42 42 H 1.08999 * 117.49959 * 144.99344 * 22 20 18 43 43 H 1.07995 * 119.99284 * 359.97438 * 26 25 23 44 44 H 1.07993 * 119.98526 * 180.23306 * 27 26 25 45 45 H 1.07996 * 119.99292 * 179.76915 * 28 27 26 46 46 H 1.08007 * 120.00663 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7620 -5.2837 -1.7043 13 6 0.7315 -5.0155 -2.5857 14 6 -0.1058 -6.0476 -2.9799 15 6 0.1260 -7.3166 -2.4711 16 6 1.1762 -7.5088 -1.5938 17 7 1.9556 -6.5040 -1.2442 18 6 2.6406 -4.1250 1.1667 19 8 3.4291 -5.0466 1.1667 20 6 2.1506 -3.5526 2.4718 21 1 1.1186 -3.2015 2.4731 22 6 3.1588 -2.7859 3.3299 23 6 2.6863 -4.1761 3.7622 24 1 3.3936 -5.0000 3.6671 25 6 1.7470 -4.2579 4.9377 26 6 1.2081 -3.1031 5.4736 27 6 0.3429 -3.1782 6.5489 28 6 0.0238 -4.4075 7.0956 29 6 0.5659 -5.5621 6.5640 30 6 1.4281 -5.4880 5.4843 31 17 2.1091 -6.9381 4.8156 32 1 -0.4850 0.8401 0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6245 -2.5571 0.8896 35 1 2.6867 -3.3879 -2.0289 36 1 3.6883 -4.5596 -1.1389 37 1 0.5806 -4.0146 -2.9623 38 1 -0.9194 -5.8676 -3.6670 39 1 -0.5062 -8.1443 -2.7569 40 1 1.3636 -8.4941 -1.1935 41 1 4.1768 -2.6958 2.9506 42 1 2.7903 -1.9302 3.8957 43 1 1.4608 -2.1424 5.0500 44 1 -0.0808 -2.2761 6.9648 45 1 -0.6494 -4.4653 7.9381 46 1 0.3163 -6.5223 6.9909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = 47.424557 kcal Electronic energy + Delta-G solvation = -30631.469675 eV Core-core repulsion = 26512.695984 eV Total energy + Delta-G solvation = -4118.773691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.13210 -39.76343 -38.73992 -36.33139 -36.11738 -34.95192 -32.83778 -32.16055 -31.40162 -30.70597 -30.53277 -27.67967 -26.47118 -24.03970 -23.52183 -23.31621 -22.73598 -22.38084 -21.41161 -20.24727 -18.19778 -17.43966 -16.81410 -16.58810 -16.18176 -15.87250 -15.66813 -15.26368 -15.20632 -15.12891 -14.52642 -14.25945 -13.93386 -13.76447 -13.58380 -13.40001 -13.19096 -12.88457 -12.64130 -12.35444 -12.16898 -11.73082 -11.65494 -11.63794 -11.47626 -11.43163 -11.31305 -11.14428 -10.96554 -10.76724 -10.53257 -10.40862 -10.17344 -9.99693 -9.81679 -9.63124 -9.11192 -9.08816 -8.83880 -8.72339 -8.54273 -8.42502 -7.73743 -6.19402 -4.26212 1.15380 1.24505 1.32506 1.54471 2.26977 3.22219 3.25389 3.27761 3.31184 3.58377 3.78339 4.24618 4.31979 4.39333 4.62516 4.72647 4.80690 4.96679 5.00166 5.05021 5.13606 5.17058 5.26332 5.27425 5.31851 5.37406 5.41771 5.51110 5.66806 5.68468 5.80902 5.88670 5.95382 6.03139 6.08846 6.20897 6.24634 6.29160 6.37327 6.40079 6.42396 6.44918 6.62684 6.74967 6.79880 6.94501 7.17924 7.52112 7.75405 8.04867 8.30173 8.38173 8.79190 9.07829 9.41451 10.87301 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.006031 B = 0.004235 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4641.218421 B = 6609.357854 C = 9991.865488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.240 3.760 10 N -0.588 5.588 11 C 0.169 3.831 12 C 0.120 3.880 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.092 3.908 17 N -0.458 5.458 18 C 0.546 3.454 19 O -0.549 6.549 20 C -0.144 4.144 21 H 0.126 0.874 22 C -0.131 4.131 23 C -0.109 4.109 24 H 0.129 0.871 25 C -0.032 4.032 26 C -0.107 4.107 27 C -0.112 4.112 28 C -0.119 4.119 29 C -0.112 4.112 30 C -0.031 4.031 31 Cl -0.064 7.064 32 H 0.265 0.735 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -9.278 6.173 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.120 3.880 10 N -0.318 5.318 11 C 0.044 3.956 12 C -0.019 4.019 13 C -0.177 4.177 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.065 4.065 17 N -0.167 5.167 18 C 0.334 3.666 19 O -0.428 6.428 20 C -0.164 4.164 21 H 0.143 0.857 22 C -0.168 4.168 23 C -0.128 4.128 24 H 0.147 0.853 25 C -0.033 4.033 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.137 4.137 29 C -0.131 4.131 30 C -0.057 4.057 31 Cl -0.035 7.035 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.717 -9.891 6.670 11.951 hybrid contribution -0.664 1.079 -0.776 1.486 sum -1.381 -8.811 5.893 10.690 Atomic orbital electron populations 1.69914 1.05985 1.27318 1.49868 1.24907 0.94785 0.99125 0.94842 0.86611 0.79572 0.82734 0.78877 1.20158 1.21265 1.20062 1.21435 0.93568 0.90286 1.51772 0.92047 1.19445 0.87486 0.82567 0.98491 1.48030 1.45936 1.34494 1.03377 1.20120 0.96387 0.91881 0.87195 1.21911 0.94923 0.92810 0.92249 1.22118 0.95918 1.00519 0.99106 1.21536 0.98245 0.92763 0.98160 1.22083 1.00032 0.97976 1.00151 1.22754 0.91348 0.98062 0.94364 1.67649 1.27572 0.99658 1.21789 1.19406 0.80705 0.81917 0.84574 1.90639 1.35471 1.29280 1.87437 1.22225 1.01129 1.03912 0.89178 0.85650 1.22977 0.99350 0.93568 1.00914 1.21183 1.00776 0.99105 0.91728 0.85313 1.19092 0.97022 0.91439 0.95736 1.21177 0.96829 0.98255 0.96246 1.21225 0.97599 0.97973 0.96252 1.21059 1.00294 0.91993 1.00349 1.21002 0.97082 0.99497 0.95538 1.20795 0.99897 0.87632 0.97420 1.98379 1.83918 1.36118 1.85060 0.92538 0.94858 0.94459 0.88720 0.89171 0.84486 0.85164 0.85374 0.83355 0.87971 0.87764 0.84540 0.85434 0.85415 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.21 9.39 -34.44 -0.32 -13.53 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.24 5.54 4.99 -5.19 -0.03 5.51 16 10 N -0.59 -12.42 2.44 -176.43 -0.43 -12.85 16 11 C 0.17 3.21 5.72 -5.19 -0.03 3.18 16 12 C 0.12 2.17 6.36 -82.58 -0.53 1.64 16 13 C -0.16 -2.44 9.72 -39.44 -0.38 -2.83 16 14 C -0.08 -1.07 10.17 -39.28 -0.40 -1.47 16 15 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 16 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 17 N -0.46 -8.48 10.27 -9.47 -0.10 -8.58 16 18 C 0.55 11.68 7.46 -10.99 -0.08 11.60 16 19 O -0.55 -12.70 15.84 5.55 0.09 -12.61 16 20 C -0.14 -2.73 4.92 -91.77 -0.45 -3.18 16 21 H 0.13 2.48 6.44 -51.93 -0.33 2.14 16 22 C -0.13 -2.16 9.57 -26.70 -0.26 -2.42 16 23 C -0.11 -1.83 5.07 -91.74 -0.46 -2.29 16 24 H 0.13 2.32 6.69 -51.93 -0.35 1.97 16 25 C -0.03 -0.48 5.61 -104.59 -0.59 -1.07 16 26 C -0.11 -1.43 9.30 -39.58 -0.37 -1.80 16 27 C -0.11 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 29 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 30 C -0.03 -0.44 6.31 -39.50 -0.25 -0.69 16 31 Cl -0.06 -0.94 27.42 -51.86 -1.42 -2.36 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 0.91 5.99 -51.93 -0.31 0.60 16 35 H 0.09 1.67 7.97 -51.93 -0.41 1.25 16 36 H 0.09 1.77 7.42 -51.93 -0.39 1.39 16 37 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.10 1.54 6.18 -51.93 -0.32 1.22 16 43 H 0.14 1.74 6.02 -52.49 -0.32 1.42 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -30.23 406.83 -11.81 -42.05 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.78 Total: 8.73 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -6.02 Total: -12.35 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.21 Total: -44.43 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.42 Total: -2.36 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.23 -11.81 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.470 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds