Wall clock time and date at job start Tue Mar 31 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00381 * 2 1 4 4 N 1.34779 * 119.99857 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99883 * 184.18488 * 4 2 1 6 6 H 1.08999 * 109.47601 * 33.76948 * 5 4 2 7 7 C 1.53005 * 109.47045 * 153.76859 * 5 4 2 8 8 C 1.50699 * 109.47106 * 294.99569 * 7 5 4 9 9 O 1.21282 * 119.99887 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99941 * 179.97438 * 8 7 5 11 11 C 1.37141 * 119.99876 * 5.13930 * 10 8 7 12 12 H 1.07994 * 120.00050 * 350.20517 * 11 10 8 13 13 C 1.38897 * 119.99481 * 170.20659 * 11 10 8 14 14 N 1.31419 * 120.00217 * 358.07245 * 13 11 10 15 15 Si 1.86797 * 119.99551 * 178.07721 * 13 11 10 16 16 H 1.48498 * 109.47415 * 59.99603 * 15 13 11 17 17 H 1.48500 * 109.46791 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47296 * 299.99835 * 15 13 11 19 19 C 1.39786 * 119.99756 * 185.14218 * 10 8 7 20 20 C 1.38994 * 120.06814 * 96.30611 * 19 10 8 21 21 C 1.38070 * 119.97246 * 180.25021 * 20 19 10 22 22 C 1.38292 * 120.10693 * 0.04811 * 21 20 19 23 23 C 1.38524 * 120.12527 * 359.94856 * 22 21 20 24 24 F 1.35102 * 119.98118 * 180.02562 * 23 22 21 25 25 C 1.38312 * 120.02730 * 0.02831 * 23 22 21 26 26 C 1.50703 * 109.47346 * 273.76481 * 5 4 2 27 27 C 1.38231 * 119.99822 * 320.49256 * 26 5 4 28 28 C 1.38240 * 119.99905 * 179.78509 * 27 26 5 29 29 C 1.38243 * 119.99808 * 0.43800 * 28 27 26 30 30 C 1.38234 * 119.99742 * 359.81722 * 29 28 27 31 31 C 1.38236 * 119.99834 * 140.76064 * 26 5 4 32 32 H 1.09003 * 109.47225 * 239.99896 * 1 2 3 33 33 H 1.09001 * 109.47125 * 359.97438 * 1 2 3 34 34 H 1.09001 * 109.47573 * 119.99722 * 1 2 3 35 35 H 0.96996 * 119.99662 * 4.18544 * 4 2 1 36 36 H 1.09005 * 109.47221 * 174.99776 * 7 5 4 37 37 H 1.08993 * 109.47285 * 55.00039 * 7 5 4 38 38 H 0.96999 * 120.00213 * 185.01102 * 14 13 11 39 39 H 1.07995 * 120.01015 * 0.24770 * 20 19 10 40 40 H 1.08005 * 119.94682 * 180.02562 * 21 20 19 41 41 H 1.07994 * 119.93802 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.05208 * 180.02562 * 25 23 22 43 43 H 1.07995 * 120.00450 * 359.97438 * 27 26 5 44 44 H 1.08000 * 120.00110 * 180.27305 * 28 27 26 45 45 H 1.07999 * 119.99472 * 179.83156 * 29 28 27 46 46 H 1.08002 * 119.99760 * 180.02562 * 30 29 28 47 47 H 1.08001 * 120.00355 * 359.97438 * 31 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6428 -1.1690 0.0921 6 1 3.9684 -0.3368 0.7162 7 6 4.1130 -2.4862 0.7124 8 6 3.6234 -2.5746 2.1349 9 8 2.9630 -1.6729 2.6060 10 7 3.9185 -3.6559 2.8832 11 6 4.7510 -4.6264 2.3874 12 1 5.0433 -4.6077 1.3479 13 6 5.2182 -5.6334 3.2222 14 7 4.8932 -5.6349 4.4956 15 14 6.3086 -6.9855 2.5349 16 1 7.5440 -6.3858 1.9698 17 1 6.6700 -7.9304 3.6220 18 1 5.5790 -7.7147 1.4667 19 6 3.3760 -3.7882 4.1647 20 6 2.2259 -4.5440 4.3594 21 6 1.6888 -4.6691 5.6252 22 6 2.2928 -4.0427 6.7001 23 6 3.4392 -3.2886 6.5109 24 9 4.0272 -2.6784 7.5631 25 6 3.9821 -3.1600 5.2452 26 6 4.2337 -1.0240 -1.2867 27 6 3.6591 -1.6825 -2.3576 28 6 4.1984 -1.5460 -3.6231 29 6 5.3179 -0.7581 -3.8161 30 6 5.8956 -0.1038 -2.7441 31 6 5.3537 -0.2369 -1.4794 32 1 -0.3634 -0.5139 0.8900 33 1 -0.3633 1.0277 0.0005 34 1 -0.3634 -0.5138 -0.8900 35 1 1.6977 -2.0061 -0.0622 36 1 5.2023 -2.5254 0.7000 37 1 3.7129 -3.3216 0.1379 38 1 5.2772 -6.2953 5.0934 39 1 1.7525 -5.0330 3.5209 40 1 0.7953 -5.2568 5.7761 41 1 1.8701 -4.1421 7.6889 42 1 4.8762 -2.5725 5.0973 43 1 2.7869 -2.3012 -2.2063 44 1 3.7468 -2.0569 -4.4606 45 1 5.7408 -0.6536 -4.8043 46 1 6.7699 0.5120 -2.8949 47 1 5.8050 0.2745 -0.6420 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069736977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:07 Heat of formation + Delta-G solvation = -52.998318 kcal Electronic energy + Delta-G solvation = -33763.572876 eV Core-core repulsion = 29212.108147 eV Total energy + Delta-G solvation = -4551.464729 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.07482 -40.16069 -39.28430 -38.56726 -37.32284 -35.21724 -34.64954 -31.92041 -31.76801 -30.79928 -30.06812 -29.59964 -29.26298 -28.20064 -25.13303 -24.28833 -22.55695 -22.05206 -21.67278 -20.91488 -20.06582 -19.36769 -18.12829 -17.23516 -16.55470 -16.32263 -15.93981 -15.73596 -15.49499 -15.25026 -15.20854 -14.72096 -14.64936 -14.53481 -14.39373 -14.31365 -13.97323 -13.37762 -13.28074 -13.07549 -13.04983 -12.81437 -12.58087 -12.43027 -12.32634 -11.98801 -11.81626 -11.58529 -11.35237 -11.23943 -11.21167 -11.08535 -11.00573 -10.86687 -10.74270 -10.58574 -10.35103 -9.66196 -9.58190 -8.98052 -8.83018 -8.70219 -8.54955 -8.25352 -8.03369 -7.67567 -6.30260 -4.18372 1.41796 1.48896 2.20734 2.28455 2.98738 3.00333 3.08965 3.11188 3.49819 3.58707 3.83933 3.93339 4.34306 4.61749 4.90741 4.92723 4.96187 5.04774 5.07899 5.18216 5.23756 5.28424 5.39372 5.52062 5.54847 5.59749 5.65585 5.70566 5.76356 5.87520 5.96161 6.05544 6.07096 6.09789 6.14478 6.27231 6.30432 6.52806 6.55938 6.56607 6.62932 6.87800 6.94845 7.01019 7.07340 7.13848 7.17384 7.42216 7.54940 7.81608 7.82672 8.23929 8.56631 8.83750 9.16916 9.58920 10.47944 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.003434 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.332909 B = 8152.803697 C =10087.950416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.519 3.481 3 O -0.551 6.551 4 N -0.707 5.707 5 C 0.202 3.798 6 H 0.101 0.899 7 C -0.123 4.123 8 C 0.465 3.535 9 O -0.581 6.581 10 N -0.421 5.421 11 C -0.347 4.347 12 H 0.107 0.893 13 C 0.039 3.961 14 N -0.857 5.857 15 Si 0.927 3.073 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.290 3.710 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.182 4.182 23 C 0.095 3.905 24 F -0.157 7.157 25 C -0.117 4.117 26 C -0.083 4.083 27 C -0.106 4.106 28 C -0.124 4.124 29 C -0.127 4.127 30 C -0.121 4.121 31 C -0.103 4.103 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.397 0.603 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.275 0.725 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 1.704 -10.185 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.428 6.428 4 N -0.357 5.357 5 C 0.097 3.903 6 H 0.119 0.881 7 C -0.164 4.164 8 C 0.255 3.745 9 O -0.465 6.465 10 N -0.139 5.139 11 C -0.473 4.473 12 H 0.124 0.876 13 C -0.167 4.167 14 N -0.493 5.493 15 Si 0.753 3.247 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.198 3.802 20 C -0.143 4.143 21 C -0.109 4.109 22 C -0.201 4.201 23 C 0.075 3.925 24 F -0.136 7.136 25 C -0.137 4.137 26 C -0.085 4.085 27 C -0.124 4.124 28 C -0.142 4.142 29 C -0.145 4.145 30 C -0.139 4.139 31 C -0.122 4.122 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.881 2.736 -9.716 10.814 hybrid contribution 0.762 -1.460 -0.016 1.647 sum -3.120 1.276 -9.731 10.298 Atomic orbital electron populations 1.21890 0.92387 1.04991 1.03998 1.20576 0.90246 0.83548 0.75016 1.90678 1.70843 1.31479 1.49842 1.45781 1.06691 1.08621 1.74606 1.19550 0.79878 0.99297 0.91576 0.88079 1.21726 1.03449 0.96637 0.94555 1.19980 0.84298 0.82152 0.88083 1.90643 1.43702 1.38302 1.73829 1.41410 1.41924 1.19126 1.11399 1.19699 1.26181 1.04419 0.96993 0.87553 1.25292 0.97541 0.98572 0.95295 1.69788 1.40983 1.35484 1.03023 0.85981 0.79992 0.80252 0.78467 1.19762 1.20716 1.19739 1.16612 0.89198 0.90178 0.84197 1.20907 0.96568 1.00171 0.96694 1.20454 0.99212 0.99150 0.92046 1.20654 0.97248 1.02767 0.99419 1.17338 0.94279 0.97538 0.83362 1.91395 1.83963 1.81779 1.56414 1.20772 0.99947 1.02188 0.90784 1.20295 0.95702 0.96755 0.95703 1.20908 0.99783 0.99325 0.92371 1.21083 0.96726 0.99414 0.96951 1.21091 0.96638 0.98061 0.98679 1.21097 1.00033 0.99896 0.92838 1.21045 0.95785 0.97981 0.97359 0.89266 0.89440 0.89967 0.76908 0.87966 0.89192 0.91260 0.87183 0.86667 0.86614 0.86787 0.86393 0.86405 0.86502 0.86244 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.32 36.00 0.37 -1.56 16 2 C 0.52 8.20 7.90 -10.99 -0.09 8.12 16 3 O -0.55 -11.01 16.77 5.56 0.09 -10.92 16 4 N -0.71 -10.35 3.42 -54.93 -0.19 -10.53 16 5 C 0.20 3.21 1.71 -69.08 -0.12 3.09 16 6 H 0.10 1.92 7.29 -51.93 -0.38 1.54 16 7 C -0.12 -2.04 3.62 -27.88 -0.10 -2.14 16 8 C 0.47 9.78 7.45 -10.99 -0.08 9.70 16 9 O -0.58 -13.66 15.33 5.56 0.09 -13.58 16 10 N -0.42 -9.54 2.66 -58.98 -0.16 -9.70 16 11 C -0.35 -7.81 9.33 -14.93 -0.14 -7.95 16 12 H 0.11 2.18 6.36 -52.49 -0.33 1.85 16 13 C 0.04 0.91 5.43 -17.48 -0.09 0.81 16 14 N -0.86 -20.80 9.52 55.49 0.53 -20.27 16 15 Si 0.93 18.17 29.56 -169.99 -5.02 13.14 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 C 0.29 6.71 2.20 -83.70 -0.18 6.53 16 20 C -0.12 -2.63 9.42 -39.36 -0.37 -3.00 16 21 C -0.09 -1.70 10.04 -39.62 -0.40 -2.09 16 22 C -0.18 -3.51 10.02 -39.46 -0.40 -3.91 16 23 C 0.09 2.05 7.30 -39.45 -0.29 1.76 16 24 F -0.16 -3.29 17.27 2.25 0.04 -3.25 16 25 C -0.12 -2.74 8.82 -39.31 -0.35 -3.08 16 26 C -0.08 -1.19 4.93 -104.62 -0.52 -1.70 16 27 C -0.11 -1.33 9.33 -39.58 -0.37 -1.70 16 28 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 29 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 30 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 31 C -0.10 -1.42 9.67 -39.58 -0.38 -1.80 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 4.90 8.62 -40.82 -0.35 4.55 16 36 H 0.10 1.66 7.85 -51.93 -0.41 1.25 16 37 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 38 H 0.28 6.57 8.32 -40.82 -0.34 6.23 16 39 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.11 2.76 8.06 -52.48 -0.42 2.34 16 43 H 0.12 1.29 7.70 -52.49 -0.40 0.89 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -30.40 406.44 -9.27 -39.67 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.07 Total: 13.68 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.69 Total: -4.37 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.18 Total: -40.50 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.18 Total: -24.50 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.40 -9.27 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069736977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.327 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds