Wall clock time and date at job start Tue Mar 31 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00060 * 2 1 4 4 N 1.34777 * 119.99557 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99716 * 185.01518 * 4 2 1 6 6 H 1.08996 * 109.46930 * 328.96052 * 5 4 2 7 7 C 1.53008 * 109.46716 * 208.96553 * 5 4 2 8 8 C 1.50696 * 109.47086 * 64.99926 * 7 5 4 9 9 O 1.21279 * 120.00214 * 5.47231 * 8 7 5 10 10 N 1.34782 * 119.99431 * 185.18970 * 8 7 5 11 11 C 1.37136 * 120.00428 * 355.85753 * 10 8 7 12 12 H 1.07994 * 120.00119 * 301.04799 * 11 10 8 13 13 C 1.38892 * 119.99934 * 121.03849 * 11 10 8 14 14 N 1.31420 * 119.99836 * 3.13900 * 13 11 10 15 15 Si 1.86798 * 120.00024 * 183.12865 * 13 11 10 16 16 H 1.48505 * 109.46807 * 90.00481 * 15 13 11 17 17 H 1.48502 * 109.47276 * 210.00435 * 15 13 11 18 18 H 1.48503 * 109.47166 * 330.00498 * 15 13 11 19 19 C 1.39794 * 119.99673 * 175.85745 * 10 8 7 20 20 C 1.38996 * 120.06239 * 5.56274 * 19 10 8 21 21 C 1.38072 * 119.96896 * 179.74877 * 20 19 10 22 22 C 1.38294 * 120.09987 * 0.52487 * 21 20 19 23 23 C 1.38508 * 120.13296 * 359.74982 * 22 21 20 24 24 F 1.35107 * 119.98628 * 179.97438 * 23 22 21 25 25 C 1.38327 * 120.02646 * 359.97438 * 23 22 21 26 26 C 1.50691 * 109.47080 * 88.96536 * 5 4 2 27 27 C 1.38241 * 120.00300 * 44.86918 * 26 5 4 28 28 C 1.38233 * 120.00102 * 179.78983 * 27 26 5 29 29 C 1.38237 * 119.99712 * 0.43538 * 28 27 26 30 30 C 1.38235 * 120.00291 * 359.81734 * 29 28 27 31 31 C 1.38233 * 119.99867 * 359.97438 * 30 29 28 32 32 H 1.08997 * 109.47655 * 270.00448 * 1 2 3 33 33 H 1.09005 * 109.46866 * 30.00747 * 1 2 3 34 34 H 1.09001 * 109.47161 * 149.99921 * 1 2 3 35 35 H 0.97001 * 120.00242 * 5.01602 * 4 2 1 36 36 H 1.09000 * 109.46817 * 304.99307 * 7 5 4 37 37 H 1.09003 * 109.46669 * 185.00355 * 7 5 4 38 38 H 0.97004 * 120.00116 * 185.00767 * 14 13 11 39 39 H 1.08000 * 120.01299 * 0.02562 * 20 19 10 40 40 H 1.08002 * 119.94729 * 180.25527 * 21 20 19 41 41 H 1.08006 * 119.93080 * 179.72414 * 22 21 20 42 42 H 1.08001 * 120.05212 * 180.02562 * 25 23 22 43 43 H 1.08001 * 119.99680 * 359.97438 * 27 26 5 44 44 H 1.07994 * 120.00160 * 180.27705 * 28 27 26 45 45 H 1.08005 * 119.99605 * 179.83602 * 29 28 27 46 46 H 1.08004 * 119.99680 * 179.97438 * 30 29 28 47 47 H 1.07997 * 119.99825 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6416 -1.1697 0.1114 6 1 4.0426 -0.2677 -0.3508 7 6 4.2051 -2.4013 -0.6005 8 6 3.9174 -2.3036 -2.0765 9 8 3.4097 -1.3001 -2.5304 10 7 4.2296 -3.3295 -2.8932 11 6 4.8856 -4.4264 -2.3962 12 1 5.8517 -4.3114 -1.9276 13 6 4.3074 -5.6853 -2.4955 14 7 3.1607 -5.8343 -3.1200 15 14 5.1597 -7.1667 -1.7415 16 1 4.7023 -7.3404 -0.3394 17 1 4.8249 -8.3826 -2.5256 18 1 6.6294 -6.9548 -1.7602 19 6 3.8847 -3.2752 -4.2468 20 6 3.3245 -2.1187 -4.7767 21 6 2.9893 -2.0654 -6.1151 22 6 3.2001 -3.1648 -6.9272 23 6 3.7528 -4.3213 -6.4022 24 9 3.9569 -5.3937 -7.1982 25 6 4.0958 -4.3786 -5.0634 26 6 4.0349 -1.2063 1.5657 27 6 3.3965 -2.0733 2.4328 28 6 3.7602 -2.1099 3.7659 29 6 4.7563 -1.2733 4.2338 30 6 5.3911 -0.4027 3.3678 31 6 5.0303 -0.3691 2.0338 32 1 -0.3634 0.0001 1.0276 33 1 -0.3633 0.8900 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 1.6986 -2.0057 -0.0726 36 1 3.7371 -3.2995 -0.1977 37 1 5.2825 -2.4509 -0.4427 38 1 2.7209 -6.6989 -3.1270 39 1 3.1556 -1.2608 -4.1429 40 1 2.5579 -1.1653 -6.5274 41 1 2.9327 -3.1216 -7.9727 42 1 4.5272 -5.2800 -4.6538 43 1 2.6155 -2.7240 2.0680 44 1 3.2646 -2.7904 4.4424 45 1 5.0386 -1.3001 5.2759 46 1 6.1690 0.2513 3.7335 47 1 5.5265 0.3108 1.3572 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069736978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:10 Heat of formation + Delta-G solvation = -45.848189 kcal Electronic energy + Delta-G solvation = -33900.141970 eV Core-core repulsion = 29348.987294 eV Total energy + Delta-G solvation = -4551.154676 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.00020 -40.29358 -39.47455 -38.60166 -37.25867 -35.27747 -34.94410 -32.08393 -31.92022 -30.82934 -30.04479 -29.48337 -29.24938 -28.08760 -25.34399 -24.24921 -22.58845 -21.94376 -21.60178 -20.91742 -20.07573 -19.52459 -18.05503 -17.25455 -16.59574 -16.57012 -15.95088 -15.77828 -15.39697 -15.32550 -14.91032 -14.70356 -14.67723 -14.60660 -14.35960 -14.23425 -14.15239 -13.43530 -13.33154 -13.14888 -12.94336 -12.80219 -12.60269 -12.50020 -12.17685 -12.13213 -11.96181 -11.63298 -11.54294 -11.35890 -11.31935 -11.15299 -11.09767 -11.02729 -10.81897 -10.61373 -10.18862 -9.59752 -9.28996 -8.94378 -8.89930 -8.83040 -8.65149 -8.29647 -7.74449 -7.04012 -6.49058 -4.73289 1.38198 1.46552 2.15987 2.30859 2.94691 2.97443 3.04762 3.07150 3.48319 3.57331 3.80403 3.89942 4.26063 4.59191 4.86138 4.88862 4.94401 5.02962 5.07727 5.16952 5.24698 5.29588 5.38117 5.48605 5.54006 5.56178 5.66435 5.76880 5.81486 5.89250 5.95566 6.02438 6.04688 6.12180 6.29941 6.42360 6.49218 6.51541 6.54128 6.61950 6.69229 6.85248 6.98292 7.04782 7.10694 7.15919 7.38983 7.52520 7.63533 7.80631 7.92949 8.25892 8.54898 8.69383 9.06456 9.45157 10.31694 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.009566 B = 0.003482 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.385556 B = 8040.014816 C = 9969.386691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.519 3.481 3 O -0.549 6.549 4 N -0.710 5.710 5 C 0.196 3.804 6 H 0.106 0.894 7 C -0.121 4.121 8 C 0.497 3.503 9 O -0.551 6.551 10 N -0.385 5.385 11 C -0.370 4.370 12 H 0.095 0.905 13 C 0.055 3.945 14 N -0.842 5.842 15 Si 0.915 3.085 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.205 3.795 20 C -0.201 4.201 21 C -0.096 4.096 22 C -0.205 4.205 23 C 0.085 3.915 24 F -0.156 7.156 25 C -0.126 4.126 26 C -0.087 4.087 27 C -0.103 4.103 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.122 4.122 31 C -0.103 4.103 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.277 0.723 39 H 0.180 0.820 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 3.798 9.711 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.306 3.694 3 O -0.427 6.427 4 N -0.360 5.360 5 C 0.091 3.909 6 H 0.123 0.877 7 C -0.162 4.162 8 C 0.289 3.711 9 O -0.435 6.435 10 N -0.093 5.093 11 C -0.497 4.497 12 H 0.113 0.887 13 C -0.154 4.154 14 N -0.474 5.474 15 Si 0.740 3.260 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.189 1.189 19 C 0.108 3.892 20 C -0.220 4.220 21 C -0.115 4.115 22 C -0.225 4.225 23 C 0.065 3.935 24 F -0.135 7.135 25 C -0.147 4.147 26 C -0.088 4.088 27 C -0.121 4.121 28 C -0.142 4.142 29 C -0.143 4.143 30 C -0.140 4.140 31 C -0.121 4.121 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.197 0.803 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.167 0.833 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.104 4.822 9.446 10.663 hybrid contribution 0.031 -1.921 0.049 1.922 sum -1.073 2.901 9.496 9.987 Atomic orbital electron populations 1.21858 0.92406 1.04809 1.04080 1.20581 0.90220 0.83569 0.74987 1.90673 1.70739 1.31446 1.49839 1.45890 1.06871 1.08806 1.74456 1.19621 0.80819 1.00399 0.90081 0.87655 1.21682 1.03574 0.98105 0.92796 1.20758 0.78614 0.83211 0.88518 1.90241 1.45735 1.31947 1.75538 1.41010 1.48085 1.16585 1.03583 1.19388 1.03760 0.84420 1.42108 0.88744 1.25702 0.95561 0.99729 0.94434 1.70018 1.15250 1.26293 1.35874 0.86089 0.80122 0.80445 0.79324 1.19639 1.20392 1.18858 1.18046 0.94375 0.92368 0.84453 1.22874 1.02382 1.00698 0.96087 1.20706 1.00019 0.96972 0.93812 1.20773 1.07789 0.93904 1.00072 1.17482 1.03312 0.83888 0.88829 1.91387 1.93486 1.54900 1.73754 1.21012 1.03619 0.99998 0.90095 1.20281 0.96428 0.96179 0.95917 1.20959 0.99594 0.98301 0.93291 1.21098 0.97979 0.99405 0.95671 1.21105 0.97030 0.96739 0.99452 1.21098 1.00106 0.99200 0.93611 1.21061 0.97079 0.98306 0.95692 0.89362 0.89201 0.90256 0.76684 0.88128 0.87949 0.91268 0.80345 0.86706 0.86949 0.83334 0.86232 0.86333 0.86479 0.86246 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.31 36.01 0.37 -1.54 16 2 C 0.52 8.12 7.93 -10.98 -0.09 8.03 16 3 O -0.55 -10.79 16.67 5.56 0.09 -10.70 16 4 N -0.71 -10.41 3.74 -54.93 -0.21 -10.62 16 5 C 0.20 3.03 1.83 -69.08 -0.13 2.91 16 6 H 0.11 1.90 6.93 -51.93 -0.36 1.54 16 7 C -0.12 -2.01 4.03 -27.88 -0.11 -2.12 16 8 C 0.50 10.28 7.40 -10.99 -0.08 10.20 16 9 O -0.55 -12.17 11.84 5.56 0.07 -12.11 16 10 N -0.38 -8.76 2.64 -58.99 -0.16 -8.92 16 11 C -0.37 -8.28 7.51 -14.94 -0.11 -8.39 16 12 H 0.10 2.02 7.83 -52.49 -0.41 1.61 16 13 C 0.06 1.24 4.04 -17.49 -0.07 1.17 16 14 N -0.84 -20.30 10.68 55.49 0.59 -19.71 16 15 Si 0.92 17.54 29.56 -169.99 -5.02 12.52 16 16 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 C 0.21 4.85 6.04 -83.70 -0.51 4.34 16 20 C -0.20 -4.46 9.05 -39.36 -0.36 -4.82 16 21 C -0.10 -1.90 10.04 -39.62 -0.40 -2.30 16 22 C -0.21 -4.09 10.02 -39.46 -0.40 -4.48 16 23 C 0.08 1.87 7.30 -39.45 -0.29 1.59 16 24 F -0.16 -3.37 17.27 2.25 0.04 -3.33 16 25 C -0.13 -2.98 7.68 -39.31 -0.30 -3.28 16 26 C -0.09 -1.20 4.94 -104.63 -0.52 -1.72 16 27 C -0.10 -1.29 9.29 -39.58 -0.37 -1.66 16 28 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 29 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 30 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 31 C -0.10 -1.35 9.67 -39.58 -0.38 -1.74 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 5.22 8.64 -40.82 -0.35 4.87 16 36 H 0.10 1.63 8.02 -51.93 -0.42 1.21 16 37 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.28 6.39 8.32 -40.82 -0.34 6.05 16 39 H 0.18 4.09 4.51 -56.35 -0.25 3.84 16 40 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.15 3.72 5.10 -52.49 -0.27 3.45 16 43 H 0.12 1.36 7.87 -52.49 -0.41 0.94 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.12 1.54 8.00 -52.49 -0.42 1.12 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -29.06 398.99 -9.34 -38.40 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -5.84 Total: 17.57 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.92 Total: -9.13 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.23 Total: -39.24 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.16 Total: -22.80 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.06 -9.34 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069736978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.443 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds